Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

22082371 .. 22084618

Gene Structure 2248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G261600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGGAGAGCCCTACGACGTCGTCCCGTGCTCTTCCGTCGCCGTTGATTCTATCCTCCGCATCGGAACGGCTGGTGCAATTTGGGGTTTGTGCTCCGCTCCCCACGAGGCTCGTAAACAAGGCCTAGGAGGGGTAGCTCAGGCCGCTTTTGTGGCGAGGTCGGCTAGCTCGTGTGGCTTTCAATATGGACTTGTTGCTGGAATCTGTACTGCTACTCACTGTGGGCTTCAAAGATATCGGGGAAAGAGTGACTGGGTGAATGGTCTGATTGCTGGTGCTGTCGCAGGGGGAGCCATTGCTGCTATGACACGAAGCTGGACACAGGTGGTTCCTATGGCTTGTCTGGTTTCTGCCTTCAAAGTTGCCACTGACTATGCTAGAACAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

131

Amino Acids

13.34

Weight (kDa)

8.61

Isoelectric Point (pI)

33.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccBSI	CCGCTC	1 cut(s)	101
AciI	CCGC	3 cut(s)	61, 99, 147
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	133
AgsI	TTSAA	3 cut(s)	185, 233, 361
AluBI	AGCT	3 cut(s)	140, 171, 318
AluI	AGCT	3 cut(s)	140, 171, 318
Alw21I	GWGCWC	2 cut(s)	35, 98
AoxI	GGCC	2 cut(s)	124, 144
ApeKI	GCWGC	1 cut(s)	302
AspA2I	CCTAGG	1 cut(s)	127
AsuHPI	GGTGA	1 cut(s)	271
AsuNHI	GCTAGC	1 cut(s)	167
AvrII	CCTAGG	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	15
BauI	CACGAG	2 cut(s)	107, 172
Bbv12I	GWGCWC	2 cut(s)	35, 98
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	2 cut(s)	29, 87
BfaI	CTAG	3 cut(s)	128, 168, 381
BisI	GCNGC	2 cut(s)	147, 303
BlnI	CCTAGG	1 cut(s)	127
BlsI	GCNGC	2 cut(s)	148, 304
BmiI	GGNNCC	2 cut(s)	295, 333
BmrI	ACTGGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	72
BmtI	GCTAGC	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	265
Bpu10I	CCTNAGC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	127
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	127
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	297
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	289
BshFI	GGCC	2 cut(s)	126, 146
BsiHKAI	GWGCWC	2 cut(s)	35, 98
BslFI	GGGAC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	11
BsnI	GGCC	2 cut(s)	126, 146
Bsp1286I	GDGCHC	3 cut(s)	15, 35, 98
BspACI	CCGC	3 cut(s)	61, 99, 147
BspANI	GGCC	2 cut(s)	126, 146
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	2 cut(s)	295, 333
BspOI	GCTAGC	1 cut(s)	171
BspQI	GCTCTTC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	127
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	2 cut(s)	107, 172
BssT1I	CCWWGG	1 cut(s)	127
Bst2BI	CACGAG	2 cut(s)	107, 172
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	1 cut(s)	141
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 177, 293, 302
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	126, 146
BtsIMutI	CAGTG	2 cut(s)	220, 369
Cac8I	GCNNGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	210
CviQI	GTAC	1 cut(s)	210
DdeI	CTNAG	1 cut(s)	141
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	126
Eco24I	GRGCYC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	239
EcoRV	GATATC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	15
ErhI	CCWWGG	1 cut(s)	127
FaiI	YATR	4 cut(s)	189, 308, 338, 378
FaqI	GGGAC	1 cut(s)	11
Fnu4HI	GCNGC	2 cut(s)	147, 303
FriOI	GRGCYC	1 cut(s)	15
Fsp4HI	GCNGC	2 cut(s)	147, 303
FspBI	CTAG	3 cut(s)	128, 168, 381
GluI	GCNGC	2 cut(s)	147, 303
HaeIII	GGCC	2 cut(s)	126, 146
Hin1I	GRCGYC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	50, 204
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	68, 270
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	3 cut(s)	23, 26, 44
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 177, 293, 302
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	101, 106, 293
LpnPI	CCDG	9 cut(s)	60, 128, 186, 241, 261, 273, 304, 311, 332
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	72
MaeI	CTAG	3 cut(s)	128, 168, 381
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	251
MbiI	CCGCTC	1 cut(s)	101
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	3 cut(s)	15, 35, 98
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	4 cut(s)	68, 103, 125, 153
MwoI	GCNNNNNNNGC	6 cut(s)	146, 155, 164, 177, 293, 302
NheI	GCTAGC	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	295, 333
NmuCI	GTSAC	1 cut(s)	251
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	50, 204
PflFI	GACNNNGTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	148, 304
PspN4I	GGNNCC	2 cut(s)	295, 333
PsyI	GACNNNGTC	1 cut(s)	23
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
SapI	GCTCTTC	1 cut(s)	40
SatI	GCNGC	2 cut(s)	147, 303
SduI	GDGCHC	3 cut(s)	15, 35, 98
SetI	ASST	6 cut(s)	24, 142, 164, 173, 320, 330
SfaNI	GCATC	1 cut(s)	72
Sse9I	AATT	1 cut(s)	81
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	61, 99, 147
SspMI	CTAG	3 cut(s)	128, 168, 381
StuI	AGGCCT	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	24
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	50, 204
TscAI	CASTG	2 cut(s)	227, 376
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	251
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	227, 376
Tth111I	GACNNNGTC	1 cut(s)	23
XmaJI	CCTAGG	1 cut(s)	127
XspI	CTAG	3 cut(s)	128, 168, 381
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.