Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

54865747 .. 54867832

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGAGGTAGACCCGTACGGCATCGCGCCGTGCTCTTCCCTTGCCGTTTCTTCAATCGTCAACGTCGGAACGGCTGGAGCCATTTGGGGTTTATGCTCCGCTCCCCACGATGCTCATAAATTAGGCCTGACTGGAATAAATCGATTTGGGTTTGTGGCAAACTCGGCTGCCAGGTGTACCTTTCAATGTGCACTTATTTCTGGAATTTCTACTTCTGTTCACTGTGGAATGCAAAGATATCGGGGGAAGGATGATTGGGTGAATGGTTTGGTTGCTGGGGCTATGGCAGGGGGAGCTATTGCTGCTCTATCAAGAAGCTGGAAACAGATCCCTGAAGATGATCTTAGGTTACTTCTAAAGACTAAAGTCTTATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

125

Amino Acids

13.08

Weight (kDa)

8.62

Isoelectric Point (pI)

15.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	16 - 101	6.4e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	99
AclWI	GGATC	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	204
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	2 cut(s)	17, 178
AgsI	TTSAA	2 cut(s)	54, 185
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	296, 318
AluI	AGCT	2 cut(s)	296, 318
Alw21I	GWGCWC	2 cut(s)	35, 193
Alw44I	GTGCAC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	322
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	2 cut(s)	167, 302
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	193
Bbv12I	GWGCWC	2 cut(s)	35, 193
BbvI	GCAGC	2 cut(s)	154, 289
BceAI	ACGGC	4 cut(s)	13, 29, 34, 87
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	172
BisI	GCNGC	2 cut(s)	168, 303
BlsI	GCNGC	2 cut(s)	169, 304
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	30, 100
BoxI	GACNNNNGTC	1 cut(s)	365
BpmI	CTGGAG	1 cut(s)	96
Bsa29I	ATCGAT	1 cut(s)	142
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	172
BseCI	ATCGAT	1 cut(s)	142
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	154, 289
BseYI	CCCAGC	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	126
BshVI	ATCGAT	1 cut(s)	142
BsiHKAI	GWGCWC	2 cut(s)	35, 193
BsiWI	CGTACG	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	35, 193
Bsp143I	GATC	2 cut(s)	327, 340
BspACI	CCGC	1 cut(s)	99
BspANI	GGCC	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	142
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	322
BspQI	GCTCTTC	1 cut(s)	40
BsrBI	CCGCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	327, 340
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	2 cut(s)	330, 343
BstMBI	GATC	2 cut(s)	327, 340
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 293, 302
BstNI	CCWGG	1 cut(s)	172
BstPAI	GACNNNNGTC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	154, 289
BstX2I	RGATCY	1 cut(s)	327
BstYI	RGATCY	1 cut(s)	327
Bsu15I	ATCGAT	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	126
BsuTUI	ATCGAT	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	142
Csp6I	GTAC	2 cut(s)	16, 177
CviJI	RGCY	7 cut(s)	74, 80, 126, 167, 281, 296, 318
CviKI_1	RGCY	7 cut(s)	74, 80, 126, 167, 281, 296, 318
CviQI	GTAC	2 cut(s)	16, 177
DdeI	CTNAG	1 cut(s)	344
DpnI	GATC	2 cut(s)	329, 342
DpnII	GATC	2 cut(s)	327, 340
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	239
Eco57I	CTGAAG	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	4 cut(s)	94, 117, 284, 373
FalI	AAGNNNNNCTT	2 cut(s)	327, 359
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	168, 303
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	168, 303
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	168, 303
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	96
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HphI	GGTGA	1 cut(s)	271
Hpy166II	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	201, 312
Hpy8I	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	191, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 293, 302
HpyF3I	CTNAG	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	2 cut(s)	327, 340
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	4 cut(s)	77, 101, 106, 293
Lsp1109I	GCAGC	2 cut(s)	154, 289
LweI	GCATC	2 cut(s)	30, 100
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	348
MalI	GATC	2 cut(s)	329, 342
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	2 cut(s)	327, 340
MboII	GAAGA	3 cut(s)	27, 42, 347
MflI	RGATCY	1 cut(s)	327
MhlI	GDGCHC	2 cut(s)	35, 193
MluCI	AATT	2 cut(s)	119, 204
MmeI	TCCRAC	1 cut(s)	46
MseI	TTAA	1 cut(s)	376
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	164, 293, 302
NdeII	GATC	2 cut(s)	327, 340
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	169, 304
PshAI	GACNNNNGTC	1 cut(s)	365
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	79
PsuI	RGATCY	1 cut(s)	327
RsaI	GTAC	2 cut(s)	17, 178
RsaNI	GTAC	2 cut(s)	16, 177
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	376
SatI	GCNGC	2 cut(s)	168, 303
Sau3AI	GATC	2 cut(s)	327, 340
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	35, 193
SetI	ASST	7 cut(s)	9, 66, 176, 182, 298, 320, 350
SfaNI	GCATC	2 cut(s)	30, 100
Sse9I	AATT	2 cut(s)	119, 204
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	119, 204
Tru1I	TTAA	1 cut(s)	376
Tru9I	TTAA	1 cut(s)	376
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	2 cut(s)	167, 302
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.