Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

55362622 .. 55364979

Gene Structure 2358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG353300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAGGTAGACCCGTACGGCATCGCGCCGTGCTCTTCCCTTGCCGTTTCTTCAATCGTCAACGTCGGAACGGCTGGTGCCATTTGGGGTTTATGCTCCGCTCCCCACGATGCTCATAAATTAGGCCTGACTGGAATAAATCGAGTTGGGTTTGTGGCAAACTCGGCTGCCAGGTGTACCTTTCAATGTGCACTTATTTCTGGAATTTCTACTTCTGTTCACTGCGGAATGCAAAGATATCGGGGGAAGGATGATTGGGTTAGTGACGCTCCCATACAGATTGTTTTTTTTTTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

99

Amino Acids

10.42

Weight (kDa)

6.79

Isoelectric Point (pI)

5.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	26
AciI	CCGC	2 cut(s)	99, 225
AcsI	RAATTY	1 cut(s)	204
AfaI	GTAC	2 cut(s)	17, 178
AgsI	TTSAA	2 cut(s)	54, 185
AjnI	CCWGG	1 cut(s)	170
Alw21I	GWGCWC	2 cut(s)	35, 193
Alw44I	GTGCAC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	204
AspLEI	GCGC	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	35, 193
BbvI	GCAGC	1 cut(s)	154
BceAI	ACGGC	4 cut(s)	13, 29, 34, 87
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	2 cut(s)	30, 100
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	35, 193
BsiWI	CGTACG	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	35, 193
BspACI	CCGC	2 cut(s)	99, 225
BspANI	GGCC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	172
Bst6I	CTCTTC	1 cut(s)	40
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	28
CseI	GACGC	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	16, 177
CviJI	RGCY	3 cut(s)	74, 126, 167
CviKI_1	RGCY	3 cut(s)	74, 126, 167
CviQI	GTAC	2 cut(s)	16, 177
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	126
Eco32I	GATATC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	3 cut(s)	94, 117, 275
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	1 cut(s)	168
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	126
HgaI	GACGC	1 cut(s)	275
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
Hpy166II	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	1 cut(s)	201
Hpy8I	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	241
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	191, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	101, 106, 274
LpnPI	CCDG	6 cut(s)	60, 117, 140, 157, 184, 186
Lsp1109I	GCAGC	1 cut(s)	154
LweI	GCATC	2 cut(s)	30, 100
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	263
MbiI	CCGCTC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	27, 42
MhlI	GDGCHC	2 cut(s)	35, 193
MluCI	AATT	2 cut(s)	119, 204
MmeI	TCCRAC	1 cut(s)	46
MseI	TTAA	1 cut(s)	298
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	79
NmeAIII	GCCGAG	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	234
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	79
RsaI	GTAC	2 cut(s)	17, 178
RsaNI	GTAC	2 cut(s)	16, 177
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	298
SatI	GCNGC	1 cut(s)	168
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	35, 193
SetI	ASST	4 cut(s)	9, 66, 176, 182
SfaNI	GCATC	2 cut(s)	30, 100
Sse9I	AATT	2 cut(s)	119, 204
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	99, 225
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	170
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	142
TasI	AATT	2 cut(s)	119, 204
Tru1I	TTAA	1 cut(s)	298
Tru9I	TTAA	1 cut(s)	298
TscAI	CASTG	1 cut(s)	227
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	263
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.