Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

20790544 .. 20792888

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGAGCGGGTTCGATTCACTGTTGGGAGTTGGTGGCGGAGAGATAAAGGAGGAGGAGCACCCGTATGACGTTGCGCCGTGCTCTTCCCTCGCCGTTTATGCAACCCTCAACGTCGGAGCGGCCGGTACCATTTGGGGTTTAAGCTACGCTCCCCAGGATGCTCGTAAATTCGGCCTGACTGGAATAAATCGAGCTGGTTTTGTGGCAAAGCAGGTTGCCAAGTCTACCTTGCAATGTGCATTGATTGGTGGAGTTTGTGCTGCTACTCACTGTGGAATTAAAAGATATCGGGGAAAGGATGATTGGGTGAATGGTTTGGTTTCTGGGGTTGTGACAGGGGTAGCCTTTACTGCTGTATCAAGAAACTGGAGACAGCTGATTCCTACAGTTTGTCTCATTTCTGCCTTGAGAATCTCCGTGGACCATCGTAGAAAAGATGTGTGTGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

151

Amino Acids

15.81

Weight (kDa)

9.0

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	32 - 127	6.7e-12	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	202
Acc65I	GGTACC	1 cut(s)	125
AccB1I	GGYRCC	1 cut(s)	125
AccBSI	CCGCTC	2 cut(s)	6, 119
AccI	GTMKAC	1 cut(s)	224
AciI	CCGC	3 cut(s)	6, 36, 119
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	167
AfaI	GTAC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	153
AjuI	GAANNNNNNNTTGG	2 cut(s)	286, 318
AluBI	AGCT	3 cut(s)	144, 194, 376
AluI	AGCT	3 cut(s)	144, 194, 376
Alw21I	GWGCWC	2 cut(s)	60, 83
Alw26I	GTCTC	2 cut(s)	364, 398
AoxI	GGCC	2 cut(s)	120, 172
ApeKI	GCWGC	1 cut(s)	260
ApoI	RAATTY	1 cut(s)	167
Asp718I	GGTACC	1 cut(s)	125
AspLEI	GCGC	1 cut(s)	76
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	421
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
BanI	GGYRCC	1 cut(s)	125
Bbv12I	GWGCWC	2 cut(s)	60, 83
BbvI	GCAGC	1 cut(s)	247
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	2 cut(s)	61, 77
BciT130I	CCWGG	1 cut(s)	155
BcoDI	GTCTC	2 cut(s)	364, 398
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	202
BisI	GCNGC	2 cut(s)	120, 261
BlsI	GCNGC	2 cut(s)	121, 262
Bme1390I	CCNGG	1 cut(s)	155
Bme18I	GGWCC	1 cut(s)	421
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	388
BpuEI	CTTGAG	1 cut(s)	427
BsaJI	CCNNGG	2 cut(s)	153, 417
BsaXI	ACNNNNNCTCC	2 cut(s)	47, 77
Bse118I	RCCGGY	1 cut(s)	122
Bse1I	ACTGG	2 cut(s)	184, 371
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	155
BseDI	CCNNGG	2 cut(s)	153, 417
BseGI	GGATG	2 cut(s)	163, 304
BseMI	GCAATG	1 cut(s)	239
BseNI	ACTGG	2 cut(s)	184, 371
BseRI	GAGGAG	2 cut(s)	65, 68
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	1 cut(s)	247
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	2 cut(s)	122, 174
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	123
BsiHKAI	GWGCWC	2 cut(s)	60, 83
BsiSI	CCGG	1 cut(s)	123
BsmAI	GTCTC	2 cut(s)	364, 398
BsnI	GGCC	2 cut(s)	122, 174
Bsp1286I	GDGCHC	2 cut(s)	60, 83
BspACI	CCGC	3 cut(s)	6, 36, 119
BspANI	GGCC	2 cut(s)	122, 174
BspLI	GGNNCC	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	202
BspQI	GCTCTTC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	125
BsrBI	CCGCTC	2 cut(s)	6, 119
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	122
BsrI	ACTGG	2 cut(s)	184, 371
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	2 cut(s)	153, 417
Bst2UI	CCWGG	1 cut(s)	155
Bst4CI	ACNGT	3 cut(s)	21, 272, 388
Bst6I	CTCTTC	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	417
BstF5I	GGATG	2 cut(s)	163, 304
BstHHI	GCGC	1 cut(s)	76
BstMAI	GTCTC	2 cut(s)	364, 398
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	98, 350
BstNI	CCWGG	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	1 cut(s)	247
BstZI	CGGCCG	1 cut(s)	120
BsuRI	GGCC	2 cut(s)	122, 174
BtgI	CCRYGG	1 cut(s)	417
BtsCI	GGATG	2 cut(s)	163, 304
BtsIMutI	CAGTG	2 cut(s)	17, 268
BveI	ACCTGC	1 cut(s)	202
CfoI	GCGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	122
Cfr13I	GGNCC	1 cut(s)	421
Csp6I	GTAC	1 cut(s)	126
CviJI	RGCY	6 cut(s)	122, 144, 174, 194, 344, 376
CviKI_1	RGCY	6 cut(s)	122, 144, 174, 194, 344, 376
CviQI	GTAC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
EciI	GGCGGA	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	287
Eco47I	GGWCC	1 cut(s)	421
Eco52I	CGGCCG	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	153
EcoRV	GATATC	1 cut(s)	287
FaiI	YATR	2 cut(s)	66, 99
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	2 cut(s)	120, 261
FokI	GGATG	2 cut(s)	170, 311
Fsp4HI	GCNGC	2 cut(s)	120, 261
GlaI	GCGC	1 cut(s)	75
GluI	GCNGC	2 cut(s)	120, 261
GsuI	CTGGAG	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	122, 174
HapII	CCGG	1 cut(s)	123
HhaI	GCGC	1 cut(s)	76
Hin6I	GCGC	1 cut(s)	74
HinP1I	GCGC	1 cut(s)	74
HinfI	GANTC	3 cut(s)	14, 379, 411
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	1 cut(s)	319
Hpy166II	GTNNAC	2 cut(s)	225, 421
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	2 cut(s)	360, 450
Hpy8I	GTNNAC	2 cut(s)	225, 421
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4III	ACNGT	3 cut(s)	21, 272, 388
HpyCH4IV	ACGT	2 cut(s)	69, 111
HpyCH4V	TGCA	3 cut(s)	101, 232, 239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	98, 350
HpySE526I	ACGT	2 cut(s)	69, 111
HspAI	GCGC	1 cut(s)	74
KpnI	GGTACC	1 cut(s)	129
LguI	GCTCTTC	1 cut(s)	88
LmnI	GCTCC	3 cut(s)	55, 116, 154
Lsp1109I	GCAGC	1 cut(s)	247
LweI	GCATC	1 cut(s)	148
MaeII	ACGT	2 cut(s)	69, 111
MaeIII	GTNAC	1 cut(s)	331
MbiI	CCGCTC	2 cut(s)	6, 119
MboII	GAAGA	1 cut(s)	75
MhlI	GDGCHC	2 cut(s)	60, 83
MluCI	AATT	2 cut(s)	167, 276
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	43, 46, 98, 116
MseI	TTAA	2 cut(s)	140, 279
MslI	CAYNNNNRTG	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	376
MspI	CCGG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	2 cut(s)	98, 350
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	331
PciSI	GCTCTTC	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	14, 379, 411
PkrI	GCNGC	2 cut(s)	121, 262
Psp6I	CCWGG	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	153
PspN4I	GGNNCC	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	421
PvuII	CAGCTG	1 cut(s)	376
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
RseI	CAYNNNNRTG	1 cut(s)	63
SapI	GCTCTTC	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	140, 279
SatI	GCNGC	2 cut(s)	120, 261
Sau96I	GGNCC	1 cut(s)	421
ScrFI	CCNGG	1 cut(s)	155
SduI	GDGCHC	2 cut(s)	60, 83
SetI	ASST	7 cut(s)	72, 114, 146, 196, 216, 230, 378
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	421
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	406
SmoI	CTYRAG	1 cut(s)	406
Sse9I	AATT	2 cut(s)	167, 276
SsiI	CCGC	3 cut(s)	6, 36, 119
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	21, 272, 388
TaiI	ACGT	2 cut(s)	72, 114
TaqI	TCGA	2 cut(s)	12, 190
TasI	AATT	2 cut(s)	167, 276
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	3 cut(s)	14, 379, 411
Tru1I	TTAA	2 cut(s)	140, 279
Tru9I	TTAA	2 cut(s)	140, 279
TscAI	CASTG	2 cut(s)	24, 275
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	260
Tsp45I	GTSAC	1 cut(s)	331
TspGWI	ACGGA	1 cut(s)	406
TspRI	CASTG	2 cut(s)	24, 275
VpaK11BI	GGWCC	1 cut(s)	421
XapI	RAATTY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.