Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Reverse (-)

22893489 .. 22894869

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g22840.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGGGAGAGCCGTACGACGTCGTGCCCTGCTCCTCCGTCGCCGTCGATTCCATCCTCCGCATCGGAACGGCCGGTGCAATTTGGGGCCTATGCTCCGGTCCCCACGATGCTCGTAAACAAGGCTTGACTGGAGCAGCTCAGGCGGCTTTTGTGGCGAGGTCGGCTGGAGCGTGTGGAGTGCAATATGGACTTGTTGCTGGGATATGTACTGTTACTCATTGCGGGCTTCAAAGATATCGGGGAAAGAGTGATTGGGTGAATGGTTTGGTTGCTGGTGCAGTAGCAGGGGGAGCCATTGCTGCTATGACACGAAGCTGGACGCAGGTGATTCCTATGGCTTGTCTGGTGTCTGCTTTCAAAGTTGCCACTGACTATGCTAGAGCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

131

Amino Acids

13.25

Weight (kDa)

8.61

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	316
AatII	GACGTC	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	316
AciI	CCGC	3 cut(s)	61, 146, 225
AcoI	YGGCCR	1 cut(s)	72
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	17, 211
AgsI	TTSAA	2 cut(s)	233, 361
AjuI	GAANNNNNNNTTGG	2 cut(s)	238, 270
AluBI	AGCT	2 cut(s)	140, 318
AluI	AGCT	2 cut(s)	140, 318
AoxI	GGCC	2 cut(s)	72, 88
ApeKI	GCWGC	2 cut(s)	137, 302
AspS9I	GGNCC	2 cut(s)	88, 101
AsuHPI	GGTGA	2 cut(s)	271, 340
AvaII	GGWCC	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	30
BbvI	GCAGC	2 cut(s)	149, 289
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	2 cut(s)	29, 87
BfaI	CTAG	1 cut(s)	381
BfuAI	ACCTGC	1 cut(s)	316
BisI	GCNGC	3 cut(s)	138, 147, 303
BlsI	GCNGC	3 cut(s)	139, 148, 304
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	88, 101
BmiI	GGNNCC	3 cut(s)	89, 103, 295
BmsI	GCATC	2 cut(s)	72, 100
BpmI	CTGGAG	2 cut(s)	153, 189
Bpu10I	CCTNAGC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	98
Bse118I	RCCGGY	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	136
Bse3DI	GCAATG	2 cut(s)	220, 297
BseGI	GGATG	1 cut(s)	54
BseMI	GCAATG	2 cut(s)	220, 297
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	136
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	1 cut(s)	30
BseX3I	CGGCCG	1 cut(s)	72
BseXI	GCAGC	2 cut(s)	149, 289
BseYI	CCCAGC	1 cut(s)	200
BsgI	GTGCAG	1 cut(s)	300
Bsh1285I	CGRYCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	74, 90
BsiEI	CGRYCG	1 cut(s)	75
BsiSI	CCGG	2 cut(s)	75, 99
BsiWI	CGTACG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	87
BsmFI	GGGAC	1 cut(s)	87
BsnI	GGCC	2 cut(s)	74, 90
Bsp1286I	GDGCHC	1 cut(s)	30
BspACI	CCGC	3 cut(s)	61, 146, 225
BspANI	GGCC	2 cut(s)	74, 90
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	89, 103, 295
BspMI	ACCTGC	1 cut(s)	316
BsrDI	GCAATG	2 cut(s)	220, 297
BsrFI	RCCGGY	1 cut(s)	74
BsrI	ACTGG	1 cut(s)	136
BssAI	RCCGGY	1 cut(s)	74
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	54
BstMCI	CGRYCG	1 cut(s)	75
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 164, 293, 302
BstSLI	GKGCMC	1 cut(s)	30
BstV1I	GCAGC	2 cut(s)	149, 289
BstZI	CGGCCG	1 cut(s)	72
BsuRI	GGCC	2 cut(s)	74, 90
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	227
Cfr10I	RCCGGY	1 cut(s)	74
Cfr13I	GGNCC	2 cut(s)	88, 101
CseI	GACGC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	16, 210
CviQI	GTAC	2 cut(s)	16, 210
DdeI	CTNAG	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	72
EagI	CGGCCG	1 cut(s)	72
EclXI	CGGCCG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	101
Eco52I	CGGCCG	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	6 cut(s)	94, 189, 208, 308, 338, 378
FaqI	GGGAC	1 cut(s)	87
FauI	CCCGC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	138, 147, 303
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	3 cut(s)	138, 147, 303
FspBI	CTAG	1 cut(s)	381
GluI	GCNGC	3 cut(s)	138, 147, 303
GsaI	CCCAGC	1 cut(s)	204
GsuI	CTGGAG	2 cut(s)	153, 189
HaeIII	GGCC	2 cut(s)	74, 90
HapII	CCGG	2 cut(s)	75, 99
HgaI	GACGC	1 cut(s)	331
Hin1I	GRCGYC	1 cut(s)	21
HinfI	GANTC	2 cut(s)	50, 331
HpaII	CCGG	2 cut(s)	75, 99
HphI	GGTGA	2 cut(s)	271, 340
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	4 cut(s)	23, 26, 44, 50
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	3 cut(s)	80, 184, 281
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 164, 293, 302
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	21
Hsp92I	GRCGYC	1 cut(s)	21
LmnI	GCTCC	5 cut(s)	38, 101, 134, 170, 293
Lsp1109I	GCAGC	2 cut(s)	149, 289
LweI	GCATC	2 cut(s)	72, 100
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	30
MluCI	AATT	2 cut(s)	81, 387
MnlI	CCTC	3 cut(s)	46, 68, 153
MspI	CCGG	2 cut(s)	75, 99
MwoI	GCNNNNNNNGC	6 cut(s)	143, 146, 155, 164, 293, 302
NlaIV	GGNNCC	3 cut(s)	89, 103, 295
PaqCI	CACCTGC	1 cut(s)	316
PcsI	WCGNNNNNNNCGW	1 cut(s)	170
PfeI	GAWTC	2 cut(s)	50, 331
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	139, 148, 304
PspFI	CCCAGC	1 cut(s)	200
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	89, 103, 295
PspPI	GGNCC	2 cut(s)	88, 101
RsaI	GTAC	2 cut(s)	17, 211
RsaNI	GTAC	2 cut(s)	16, 210
SatI	GCNGC	3 cut(s)	138, 147, 303
Sau96I	GGNCC	2 cut(s)	88, 101
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	24, 142, 164, 320, 330
SfaNI	GCATC	2 cut(s)	72, 100
SinI	GGWCC	1 cut(s)	101
Sse9I	AATT	2 cut(s)	81, 387
SsiI	CCGC	3 cut(s)	61, 146, 225
SspMI	CTAG	1 cut(s)	381
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	1 cut(s)	48
TasI	AATT	2 cut(s)	81, 387
TatI	WGTACW	1 cut(s)	209
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	50, 331
TscAI	CASTG	1 cut(s)	376
TseI	GCWGC	2 cut(s)	137, 302
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	101
XspI	CTAG	1 cut(s)	381
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.