Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Forward (+)

42307688 .. 42309533

Gene Structure 1846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1309700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTCGTAAACAAGGCTTGGCCGGAGCAGCTCAGGTGGCTTTTGTGGCGAGGTCGGCTGGAACGTTTGGAGTTCAGTATGCGGCACTGGGTTGAAGGACTTGTTGTTGGAATTTGTACTCTTACTCACTGCGGGCTTCAACGATATCGGGGAAAGAGCGATTGGGTGAATGGTGTGGTTGCTGGTGCAGTAGCAGGGGGAGCTATTGCCGCTATGACACGAAGCTGGACGCAGGTGATTCCTATGGCTTGTCTGGTTTCTGCCTTCAAAGTTGCCACTGACTACGCTAGAGCAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

100

Amino Acids

11.09

Weight (kDa)

9.91

Isoelectric Point (pI)

32.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	33 - 88	2.4e-09	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	223
Acc36I	ACCTGC	1 cut(s)	223
AciI	CCGC	3 cut(s)	82, 132, 210
AclI	AACGTT	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	111
AfaI	GTAC	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	95, 140, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	3 cut(s)	31, 203, 225
AluI	AGCT	3 cut(s)	31, 203, 225
AoxI	GGCC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	28
ApoI	RAATTY	1 cut(s)	111
AsuHPI	GGTGA	2 cut(s)	178, 247
BbvI	GCAGC	1 cut(s)	40
BfaI	CTAG	1 cut(s)	288
BfuAI	ACCTGC	1 cut(s)	223
BisI	GCNGC	3 cut(s)	29, 83, 210
BlsI	GCNGC	3 cut(s)	30, 84, 211
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	92
BseMII	CTCAG	1 cut(s)	46
BseNI	ACTGG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	40
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	22
BsiSI	CCGG	1 cut(s)	23
BsnI	GGCC	1 cut(s)	22
BspACI	CCGC	3 cut(s)	82, 132, 210
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	45
BspMI	ACCTGC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	1 cut(s)	32
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 55, 200, 209
BstV1I	GCAGC	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	22
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	3 cut(s)	85, 127, 276
BveI	ACCTGC	1 cut(s)	223
Cac8I	GCNNGC	1 cut(s)	134
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	117
CviJI	RGCY	9 cut(s)	17, 22, 31, 40, 58, 136, 203, 225, 248
CviKI_1	RGCY	9 cut(s)	17, 22, 31, 40, 58, 136, 203, 225, 248
CviQI	GTAC	1 cut(s)	117
DdeI	CTNAG	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	20
Eco32I	GATATC	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	146
FaiI	YATR	3 cut(s)	80, 215, 245
FauI	CCCGC	1 cut(s)	125
Fnu4HI	GCNGC	3 cut(s)	29, 83, 210
Fsp4HI	GCNGC	3 cut(s)	29, 83, 210
FspBI	CTAG	1 cut(s)	288
GluI	GCNGC	3 cut(s)	29, 83, 210
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	23
HgaI	GACGC	1 cut(s)	238
HinfI	GANTC	1 cut(s)	238
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	2 cut(s)	178, 247
Hpy166II	GTNNAC	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	89, 274
HpyCH4IV	ACGT	1 cut(s)	64
HpyCH4V	TGCA	1 cut(s)	188
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 55, 200, 209
HpyF3I	CTNAG	1 cut(s)	32
HpySE526I	ACGT	1 cut(s)	64
LmnI	GCTCC	2 cut(s)	25, 200
LpnPI	CCDG	9 cut(s)	19, 36, 44, 73, 168, 180, 211, 218, 239
Lsp1109I	GCAGC	1 cut(s)	40
MaeI	CTAG	1 cut(s)	288
MaeII	ACGT	1 cut(s)	64
MluCI	AATT	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	1 cut(s)	44
MspI	CCGG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	28, 37, 46, 55, 200, 209
PaqCI	CACCTGC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	30, 84, 211
Psp1406I	AACGTT	1 cut(s)	64
RsaI	GTAC	1 cut(s)	118
RsaNI	GTAC	1 cut(s)	117
SatI	GCNGC	3 cut(s)	29, 83, 210
SetI	ASST	7 cut(s)	33, 38, 55, 67, 205, 227, 237
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	3 cut(s)	82, 132, 210
SspMI	CTAG	1 cut(s)	288
TaiI	ACGT	1 cut(s)	67
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	116
TauI	GCSGC	2 cut(s)	85, 212
TfiI	GAWTC	1 cut(s)	238
TscAI	CASTG	3 cut(s)	92, 134, 283
TseI	GCWGC	1 cut(s)	28
TspRI	CASTG	3 cut(s)	92, 134, 283
XapI	RAATTY	1 cut(s)	111
XspI	CTAG	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.