Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0011132

Physical Location & Seq

Genomic Coordinates Forward (+)

13660232 .. 13661288

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011906

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGGTAGACCCGTACGACATCGCGCCGTGCTCTTCCCTTGCCGTTTCTTCAATCGTCAACGTCGGAACGGCTGGTGCCATTTGGGGTTTATGCTCCGCTCCCCACGATGCTCATAAATTCGGCCCGACTGGATTAAATCGAGCTGGGTTTGTGGCAAACTCGGTTGCCAGGTGTACCTTTCAATGTGCACTTATTGCTGGAATTTCTACTTCTGTTCACTGTGGAATGCAAAGATATCGGGGGAAGGATGATTGGGTGAATGGTTTGGTTGCTGGGGCTATGGCGGGGGGAGCTATTGCTGCTCTATCAAGAAGCTGGAAACAGGTGATTCCCACAGCTTGTCTGGTTTCTGCGTTGAAAATTGCCGCCGACTATGGTAGAAAAAATGTGAATACTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008104 GO:0008150 GO:0009526 GO:0009527 GO:0009536 GO:0016020 GO:0019867 GO:0031090 GO:0031967 GO:0031968 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0051179 GO:0051641 GO:0070727 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tim17

Protein Analysis

135

Amino Acids

13.83

Weight (kDa)

8.85

Isoelectric Point (pI)

17.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tim17	PF02466	16 - 118	2.5e-11	Tim17/Tim22/Tim23/Pmp24 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011132)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G62880 AT3G62880
fragaria_vesca	FvH4_2g25740 FvH4_2g25740
malus_domestica	MD03G1288400.v1.1 MD11G1309700.v1.1
prunus_persica	Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1 Prupe.8G261600_v2.0.a1
pyrus_communis	pycom03g22840
rosa_chinensis	RchiOBHm_Chr6g0294031
rosa_laevigata	RLG00000011906
rosa_multiflora	Rmu_co8175016.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173710
rosa_rugosa	Rorug06G0240400
rosa_samantha	Rh6AG353300 Rh6BG360200 Rh6DG354000
rosa_wichuraiana	Rw6G030780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	77
AccBSI	CCGCTC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	9
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	99, 287, 369
AcsI	RAATTY	2 cut(s)	119, 204
AfaI	GTAC	2 cut(s)	17, 178
AgsI	TTSAA	3 cut(s)	54, 185, 361
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	4 cut(s)	146, 296, 318, 341
AluI	AGCT	4 cut(s)	146, 296, 318, 341
Alw21I	GWGCWC	2 cut(s)	35, 193
Alw44I	GTGCAC	1 cut(s)	189
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	189
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	2 cut(s)	119, 204
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	271, 340
BaeGI	GKGCMC	1 cut(s)	193
BanI	GGYRCC	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	35, 193
BbvI	GCAGC	1 cut(s)	289
BceAI	ACGGC	3 cut(s)	13, 29, 87
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	1 cut(s)	172
BisI	GCNGC	2 cut(s)	303, 369
BlsI	GCNGC	2 cut(s)	304, 370
Bme1390I	CCNGG	1 cut(s)	172
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	172
BmsI	GCATC	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	172
BseGI	GGATG	1 cut(s)	256
BseNI	ACTGG	1 cut(s)	136
BseSI	GKGCMC	1 cut(s)	193
BseXI	GCAGC	1 cut(s)	289
BseYI	CCCAGC	2 cut(s)	146, 275
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	35, 193
BsiWI	CGTACG	1 cut(s)	15
BsmI	GAATGC	1 cut(s)	234
BsnI	GGCC	1 cut(s)	126
Bsp1286I	GDGCHC	2 cut(s)	35, 193
BspACI	CCGC	3 cut(s)	99, 287, 369
BspANI	GGCC	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	79
BspQI	GCTCTTC	1 cut(s)	40
BspT107I	GGYRCC	1 cut(s)	77
BsrBI	CCGCTC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	40
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	193
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	125
Csp6I	GTAC	2 cut(s)	16, 177
CviJI	RGCY	7 cut(s)	74, 126, 146, 281, 296, 318, 341
CviKI_1	RGCY	7 cut(s)	74, 126, 146, 281, 296, 318, 341
CviQI	GTAC	2 cut(s)	16, 177
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	239
FaiI	YATR	4 cut(s)	94, 117, 284, 378
FauI	CCCGC	1 cut(s)	280
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	2 cut(s)	303, 369
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	303, 369
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	2 cut(s)	303, 369
GsaI	CCCAGC	2 cut(s)	150, 279
HaeIII	GGCC	1 cut(s)	126
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	61
HindII	GTYRAC	1 cut(s)	61
HinfI	GANTC	1 cut(s)	331
HphI	GGTGA	2 cut(s)	271, 340
Hpy166II	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	312, 402
Hpy8I	GTNNAC	5 cut(s)	10, 61, 177, 191, 220
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	2 cut(s)	191, 232
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
HpySE526I	ACGT	1 cut(s)	63
HspAI	GCGC	1 cut(s)	26
LguI	GCTCTTC	1 cut(s)	40
LmnI	GCTCC	3 cut(s)	101, 106, 293
Lsp1109I	GCAGC	1 cut(s)	289
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	63
MbiI	CCGCTC	1 cut(s)	101
MboII	GAAGA	2 cut(s)	27, 42
MhlI	GDGCHC	2 cut(s)	35, 193
MluCI	AATT	3 cut(s)	119, 204, 363
MmeI	TCCRAC	1 cut(s)	46
MseI	TTAA	1 cut(s)	137
MspR9I	CCNGG	1 cut(s)	172
Mva1269I	GAATGC	1 cut(s)	234
MvaI	CCWGG	1 cut(s)	172
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	197, 293, 302
NlaIV	GGNNCC	1 cut(s)	79
PciSI	GCTCTTC	1 cut(s)	40
PctI	GAATGC	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	331
Pfl23II	CGTACG	1 cut(s)	15
PkrI	GCNGC	2 cut(s)	304, 370
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	2 cut(s)	146, 275
PspGI	CCWGG	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	125
RsaI	GTAC	2 cut(s)	17, 178
RsaNI	GTAC	2 cut(s)	16, 177
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	2 cut(s)	303, 369
Sau96I	GGNCC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	35, 193
SetI	ASST	9 cut(s)	9, 66, 148, 176, 182, 298, 320, 330, 343
SfaNI	GCATC	1 cut(s)	100
Sse9I	AATT	3 cut(s)	119, 204, 363
SsiI	CCGC	3 cut(s)	99, 287, 369
StyD4I	CCNGG	1 cut(s)	170
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	1 cut(s)	142
TasI	AATT	3 cut(s)	119, 204, 363
TauI	GCSGC	1 cut(s)	371
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	1 cut(s)	302
TspRI	CASTG	1 cut(s)	227
VneI	GTGCAC	1 cut(s)	189
XapI	RAATTY	2 cut(s)	119, 204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.