AT3G62970

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013924
Physical Location & Seq
Forward (+)
23270403 .. 23272992
2590 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G62970.2

Sequence Viewer

Length: 864 bp
ATGGGAGGAAGTGCTAGTCTCCAGTCAGACTCGATGGAAGCAGCAGCAGCAGCAGATTCTTCGATTCCCAGAGACAAAGACTTTGGCAAATTCCAATTCGGATGCGAGCACTACAAGAGACGATGTAAAATCAGAGCTCCTTGCTGCAATCTCATCTTCTCATGCCGCCATTGCCACAACGACTCTGCGAATTCTCTTCCTGATCCTAAAGAACGTCATGATTTGGTCCGCCAAAACGTCAAACAGGTTGTTTGTTCAATTTGTCAAACTGAGCAAGAGGTTGCTAAAGTCTGCTCGAATTGTGGCGTCAATATGGGAGAATACTTTTGCGATATCTGCAAATTCTTTGACGACGATATTTCGAAAGAACAGTTTCATTGTGATGACTGTGGAATTTGTAGAGTTGGTGGGCGTGACAAATTCTTTCATTGCCAGAACTGTGGAGCTTGCTACGGAATGGGCTTGCGCGATAAACACTCGTGCATTGAGAACTCTACAAAAAATTCTTGTCCTGTCTGTTATGAGTATCTATTTGATTCGGTAAAGGCCGCACATGTGATGAAATGTGGTCATACAATGCATATGGATTGCTTTGAACAAATGATCAATGAAAACCAGTACCGATGCCCAATTTGTGCCAAGTCAATGGTGGATATGTCTCCTTCGTGGCACCTATTAGATTTCGAGATAAGCGCAACAGAGATGCCTGTTGAGTACAAGTTTGAGGTTTCAATTCTCTGCAATGACTGCAACAAGGGGAGTAAAGCTATGTTCCACATTTTGGGACACAAGTGCAGTGATTGCGGTTCATACAACACTCGGAGAATCTCAACGCCACAAGATCCAGTGAGTGAAACAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

287

Amino Acids

32.39

Weight (kDa)

6.0

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 35 - 108 8e-20 CHY zinc finger
zf-RING_2 PF13639 168 - 212 2e-08 Ring finger domain
zf-C3HC4_2 PF13923 170 - 212 2.3e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 170 - 210 1.8e-06 RING-type zinc-finger
zf-C3HC4 PF00097 170 - 212 2.3e-06 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 669
AccB7I CCANNNNNTGG 1 cut(s) 781
AccII CGCG 1 cut(s) 468
AciI CCGC 4 cut(s) 166, 229, 549, 804
AclWI GGATC 2 cut(s) 197, 836
AcsI RAATTY 6 cut(s) 89, 190, 341, 393, 419, 502
AcyI GRCGYC 1 cut(s) 306
AfaI GTAC 2 cut(s) 620, 716
AfiI CCNNNNNNNGG 1 cut(s) 781
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 3 cut(s) 258, 596, 732
AluBI AGCT 3 cut(s) 137, 446, 767
AluI AGCT 3 cut(s) 137, 446, 767
Alw21I GWGCWC 2 cut(s) 111, 139
Alw26I GTCTC 4 cut(s) 23, 66, 112, 663
AlwI GGATC 2 cut(s) 197, 836
AoxI GGCC 1 cut(s) 546
ApeKI GCWGC 5 cut(s) 41, 44, 47, 50, 144
ApoI RAATTY 6 cut(s) 89, 190, 341, 393, 419, 502
ArsI GACNNNNNNTTYG 2 cut(s) 65, 97
Asp700I GAANNNNTTC 1 cut(s) 372
AspLEI GCGC 2 cut(s) 468, 695
AspS9I GGNCC 1 cut(s) 226
AsuII TTCGAA 1 cut(s) 362
AvaII GGWCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 669
BanII GRGCYC 1 cut(s) 139
BauI CACGAG 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 111, 139
BbvI GCAGC 5 cut(s) 53, 56, 59, 62, 131
BccI CCATC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BclI TGATCA 1 cut(s) 603
BcoDI GTCTC 4 cut(s) 23, 66, 112, 663
BfaI CTAG 1 cut(s) 15
BisI GCNGC 7 cut(s) 42, 45, 48, 51, 145, 166, 549
BlsI GCNGC 7 cut(s) 43, 46, 49, 52, 146, 167, 550
Bme18I GGWCC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 1 cut(s) 671
BmsI GCATC 3 cut(s) 92, 614, 693
BpmI CTGGAG 1 cut(s) 5
Bpu14I TTCGAA 1 cut(s) 362
BsaHI GRCGYC 1 cut(s) 306
Bsc4I CCNNNNNNNGG 1 cut(s) 781
Bse1I ACTGG 3 cut(s) 22, 616, 845
Bse3DI GCAATG 3 cut(s) 169, 427, 748
BseGI GGATG 1 cut(s) 107
BseLI CCNNNNNNNGG 1 cut(s) 781
BseMI GCAATG 3 cut(s) 169, 427, 748
BseMII CTCAG 1 cut(s) 261
BseNI ACTGG 3 cut(s) 22, 616, 845
BseXI GCAGC 5 cut(s) 53, 56, 59, 62, 131
BsgI GTGCAG 1 cut(s) 814
Bsh1236I CGCG 1 cut(s) 468
BshFI GGCC 1 cut(s) 548
BshNI GGYRCC 1 cut(s) 669
BsiHKAI GWGCWC 2 cut(s) 111, 139
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 781
BsmAI GTCTC 4 cut(s) 23, 66, 112, 663
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 1 cut(s) 798
BsnI GGCC 1 cut(s) 548
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 2 cut(s) 111, 139
Bsp143I GATC 3 cut(s) 202, 603, 841
BspACI CCGC 4 cut(s) 166, 229, 549, 804
BspANI GGCC 1 cut(s) 548
BspCNI CTCAG 1 cut(s) 262
BspFNI CGCG 1 cut(s) 468
BspHI TCATGA 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 671
BspPI GGATC 2 cut(s) 197, 836
BspT104I TTCGAA 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 669
BsrDI GCAATG 3 cut(s) 169, 427, 748
BsrI ACTGG 3 cut(s) 22, 616, 845
BssMI GATC 3 cut(s) 202, 603, 841
BssNI GRCGYC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 478
Bst2BI CACGAG 1 cut(s) 478
Bst4CI ACNGT 3 cut(s) 372, 389, 440
Bst6I CTCTTC 1 cut(s) 201
BstACI GRCGYC 1 cut(s) 306
BstAPI GCANNNNNTGC 2 cut(s) 747, 801
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 3 cut(s) 107, 448, 464
BstDEI CTNAG 1 cut(s) 270
BstF5I GGATG 1 cut(s) 107
BstFNI CGCG 1 cut(s) 468
BstHHI GCGC 2 cut(s) 468, 695
BstKTI GATC 3 cut(s) 205, 606, 844
BstMAI GTCTC 4 cut(s) 23, 66, 112, 663
BstMBI GATC 3 cut(s) 202, 603, 841
BstMWI GCNNNNNNNGC 6 cut(s) 47, 50, 171, 336, 747, 801
BstNSI RCATGY 1 cut(s) 557
BstUI CGCG 1 cut(s) 468
BstV1I GCAGC 5 cut(s) 53, 56, 59, 62, 131
BstX2I RGATCY 1 cut(s) 841
BstXI CCANNNNNNTGG 2 cut(s) 440, 646
BstYI RGATCY 1 cut(s) 841
BsuRI GGCC 1 cut(s) 548
BtsCI GGATG 1 cut(s) 107
BtsI GCAGTG 1 cut(s) 802
BtsIMutI CAGTG 2 cut(s) 802, 852
Cac8I GCNNGC 3 cut(s) 107, 448, 464
CciI TCATGA 1 cut(s) 217
CfoI GCGC 2 cut(s) 468, 695
Cfr13I GGNCC 1 cut(s) 226
CseI GACGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 619, 715
CviAII CATG 3 cut(s) 162, 218, 554
CviJI RGCY 5 cut(s) 137, 446, 462, 548, 767
CviKI_1 RGCY 5 cut(s) 137, 446, 462, 548, 767
CviQI GTAC 2 cut(s) 619, 715
DdeI CTNAG 1 cut(s) 270
DpnI GATC 3 cut(s) 204, 605, 843
DpnII GATC 3 cut(s) 202, 603, 841
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 139
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 190
EcoRV GATATC 1 cut(s) 334
EcoT22I ATGCAT 1 cut(s) 582
EcoT38I GRGCYC 1 cut(s) 139
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 3 cut(s) 165, 221, 557
FaqI GGGAC 1 cut(s) 798
FatI CATG 3 cut(s) 161, 217, 553
FauNDI CATATG 1 cut(s) 582
FbaI TGATCA 1 cut(s) 603
Fnu4HI GCNGC 7 cut(s) 42, 45, 48, 51, 145, 166, 549
FokI GGATG 1 cut(s) 114
FriOI GRGCYC 1 cut(s) 139
Fsp4HI GCNGC 7 cut(s) 42, 45, 48, 51, 145, 166, 549
FspBI CTAG 1 cut(s) 15
GlaI GCGC 2 cut(s) 467, 694
GluI GCNGC 7 cut(s) 42, 45, 48, 51, 145, 166, 549
GsuI CTGGAG 1 cut(s) 5
HaeIII GGCC 1 cut(s) 548
HgaI GACGC 1 cut(s) 295
HhaI GCGC 2 cut(s) 468, 695
Hin1I GRCGYC 1 cut(s) 306
Hin1II CATG 3 cut(s) 165, 221, 557
Hin6I GCGC 2 cut(s) 466, 693
HinP1I GCGC 2 cut(s) 466, 693
HinfI GANTC 6 cut(s) 29, 56, 64, 182, 536, 825
Hpy188I TCNGA 4 cut(s) 28, 101, 134, 822
Hpy188III TCNNGA 3 cut(s) 200, 218, 685
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 672
HpyCH4III ACNGT 3 cut(s) 372, 389, 440
HpyCH4IV ACGT 2 cut(s) 214, 237
HpyCH4V TGCA 7 cut(s) 147, 339, 483, 580, 741, 750, 795
HpyF10VI GCNNNNNNNGC 6 cut(s) 47, 50, 171, 336, 747, 801
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 2 cut(s) 214, 237
Hsp92I GRCGYC 1 cut(s) 306
Hsp92II CATG 3 cut(s) 165, 221, 557
HspAI GCGC 2 cut(s) 466, 693
Ksp22I TGATCA 1 cut(s) 603
Kzo9I GATC 3 cut(s) 202, 603, 841
LmnI GCTCC 2 cut(s) 142, 443
LpnPI CCDG 9 cut(s) 35, 82, 213, 230, 446, 525, 629, 720, 858
Lsp1109I GCAGC 5 cut(s) 53, 56, 59, 62, 131
LweI GCATC 3 cut(s) 92, 614, 693
MaeI CTAG 1 cut(s) 15
MaeII ACGT 2 cut(s) 214, 237
MaeIII GTNAC 1 cut(s) 413
MalI GATC 3 cut(s) 204, 605, 843
MboI GATC 3 cut(s) 202, 603, 841
MboII GAAGA 3 cut(s) 51, 148, 188
MflI RGATCY 1 cut(s) 841
MhlI GDGCHC 2 cut(s) 111, 139
MlyI GAGTC 2 cut(s) 23, 176
MnlI CCTC 2 cut(s) 271, 718
Mph1103I ATGCAT 1 cut(s) 582
MroXI GAANNNNTTC 1 cut(s) 372
MslI CAYNNNNRTG 1 cut(s) 381
MvnI CGCG 1 cut(s) 468
MwoI GCNNNNNNNGC 6 cut(s) 47, 50, 171, 336, 747, 801
NdeI CATATG 1 cut(s) 582
NdeII GATC 3 cut(s) 202, 603, 841
NlaIII CATG 3 cut(s) 165, 221, 557
NlaIV GGNNCC 1 cut(s) 671
NmuCI GTSAC 1 cut(s) 413
NsiI ATGCAT 1 cut(s) 582
NspI RCATGY 1 cut(s) 557
NspV TTCGAA 1 cut(s) 362
PagI TCATGA 1 cut(s) 217
PciI ACATGT 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 4 cut(s) 56, 64, 536, 825
PflMI CCANNNNNTGG 1 cut(s) 781
PkrI GCNGC 7 cut(s) 43, 46, 49, 52, 146, 167, 550
PleI GAGTC 2 cut(s) 23, 176
PpsI GAGTC 2 cut(s) 23, 176
PscI ACATGT 1 cut(s) 553
Psp124BI GAGCTC 1 cut(s) 139
PspN4I GGNNCC 1 cut(s) 671
PspPI GGNCC 1 cut(s) 226
PsuI RGATCY 1 cut(s) 841
RsaI GTAC 2 cut(s) 620, 716
RsaNI GTAC 2 cut(s) 619, 715
RseI CAYNNNNRTG 1 cut(s) 381
SacI GAGCTC 1 cut(s) 139
SatI GCNGC 7 cut(s) 42, 45, 48, 51, 145, 166, 549
Sau3AI GATC 3 cut(s) 202, 603, 841
Sau96I GGNCC 1 cut(s) 226
SchI GAGTC 2 cut(s) 23, 176
SduI GDGCHC 2 cut(s) 111, 139
SetI ASST 9 cut(s) 139, 217, 240, 249, 282, 448, 675, 729, 769
SfaNI GCATC 3 cut(s) 92, 614, 693
SfuI TTCGAA 1 cut(s) 362
SinI GGWCC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 381
SsiI CCGC 4 cut(s) 166, 229, 549, 804
SspMI CTAG 1 cut(s) 15
SstI GAGCTC 1 cut(s) 139
TaaI ACNGT 3 cut(s) 372, 389, 440
TaiI ACGT 2 cut(s) 217, 240
TaqI TCGA 5 cut(s) 32, 62, 296, 362, 684
TatI WGTACW 1 cut(s) 714
TauI GCSGC 2 cut(s) 168, 551
TfiI GAWTC 4 cut(s) 56, 64, 536, 825
TscAI CASTG 2 cut(s) 802, 852
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 5 cut(s) 41, 44, 47, 50, 144
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 5 cut(s) 365, 416, 575, 624, 798
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 2 cut(s) 802, 852
Van91I CCANNNNNTGG 1 cut(s) 781
VpaK11BI GGWCC 1 cut(s) 226
XapI RAATTY 6 cut(s) 89, 190, 341, 393, 419, 502
XceI RCATGY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 646
XmnI GAANNNNTTC 1 cut(s) 372
XspI CTAG 1 cut(s) 15
Zsp2I ATGCAT 1 cut(s) 582
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.