Rroxscaffold_7G00174660

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0013924
Physical Location & Seq
Forward (+)
14313077 .. 14316140
3064 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00174660.1

Sequence Viewer

Length: 816 bp
ATGGAAAGCTCCGGCAACCCGGCGCCTCGGACTCAAAAGCCACGCGATTTCGGAAAGTCCGAGTACGGGTGCAACCATTATCGGAGACGGTGCAGGATTCGAGCCCCTTGCTGCGATCAGATCTTCCCCTGTAGGCATTGCCACAACGAAGCCGCCAGCTCTCTGAGCAACCCGAAGGATCGCCATGAAATTGTGAGACAGGATGTGAAGCAAGTTGTGTGCTCCATTTGCGATACCGAGCAAGAGGTTGCTCAGCTTTGTGCAAACTGTGGTGTTAGCATGGGAGAGTATTTCTGCGACGTTTGCAAATTCTTTGATGATGATACCAACAAAGGGCAATTTCATTGCAATGAGTGCGGAATTTGTAGAGTCGGTGGTCGCGACAACTTCTTCCATTGTCAGAAGTGTGGGTCTTGCTATGGAGTGGATCTACGCGATAATCACTTATGTGTAGAAAATTCCATGAAGAACCACTGCCCTGTCTGTTATGAGTATCTCTTTGACTCGGTTAAAGGCACGTCAATAATGAACTGTGGGCACACAATGCATACGGATTGCTTTATTGAGATGCACTCACAGAATCAGTATCGTTGTCCCCTTTGCTCCAAGACATTGCTCAACATGACTCGTTTCTGGAATATGTTGGATGAGGAGATTGCAGCTACTCCCATGCCTGAGGAGTACCAGTACGAGGTTACTATCCTCTGCAATGACTGTGTCAAAACATGCAATGTGTCTTTTCACATTCTTGGGCTCAAGTGCAGCAATTGCAGTTCATATAACACCCGCAGAATTTCAGGTGGTGTTCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

271

Amino Acids

31.0

Weight (kDa)

6.44

Isoelectric Point (pI)

44.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 24 - 97 4.1e-20 CHY zinc finger
zf-RING_2 PF13639 158 - 201 7.2e-07 Ring finger domain
zf-C3HC4 PF00097 159 - 201 2.4e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 159 - 201 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zinc_ribbon_6 PF14599 206 - 263 6.4e-26 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 22
AccII CGCG 3 cut(s) 45, 381, 435
AciI CCGC 3 cut(s) 153, 357, 787
AclWI GGATC 2 cut(s) 186, 435
AcsI RAATTY 4 cut(s) 308, 360, 457, 792
AcyI GRCGYC 1 cut(s) 23
AfaI GTAC 3 cut(s) 65, 683, 689
AfiI CCNNNNNNNGG 3 cut(s) 66, 333, 691
AgsI TTSAA 1 cut(s) 809
AjiI CACGTC 1 cut(s) 519
AleI CACNNNNGTG 1 cut(s) 447
AluBI AGCT 4 cut(s) 9, 159, 256, 662
AluI AGCT 4 cut(s) 9, 159, 256, 662
Alw21I GWGCWC 1 cut(s) 224
Alw26I GTCTC 2 cut(s) 79, 190
AlwI GGATC 2 cut(s) 186, 435
ApeKI GCWGC 3 cut(s) 111, 659, 762
ApoI RAATTY 4 cut(s) 308, 360, 457, 792
AspLEI GCGC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 20
AxyI CCTNAGG 1 cut(s) 675
BaeGI GKGCMC 1 cut(s) 540
BanI GGYRCC 1 cut(s) 22
BanII GRGCYC 2 cut(s) 106, 756
Bbv12I GWGCWC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 98, 671, 774
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 79, 190
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 1 cut(s) 26
BglII AGATCT 1 cut(s) 120
BisI GCNGC 4 cut(s) 112, 153, 660, 763
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 4 cut(s) 113, 154, 661, 764
Bme1390I CCNGG 1 cut(s) 20
BmgBI CACGTC 1 cut(s) 519
BmiI GGNNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 1 cut(s) 558
BplI GAGNNNNNCTC 2 cut(s) 557, 589
Bpu1102I GCTNAGC 1 cut(s) 252
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 1 cut(s) 20
BsaHI GRCGYC 1 cut(s) 23
BsaJI CCNNGG 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 671, 701
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 333, 691
Bse1I ACTGG 1 cut(s) 685
Bse21I CCTNAGG 1 cut(s) 675
Bse3DI GCAATG 6 cut(s) 136, 343, 355, 611, 715, 736
BseDI CCNNGG 1 cut(s) 26
BseGI GGATG 2 cut(s) 208, 652
BseLI CCNNNNNNNGG 3 cut(s) 66, 333, 691
BseMI GCAATG 6 cut(s) 136, 343, 355, 611, 715, 736
BseMII CTCAG 3 cut(s) 155, 266, 666
BseNI ACTGG 1 cut(s) 685
BseRI GAGGAG 2 cut(s) 665, 692
BseSI GKGCMC 1 cut(s) 540
BseXI GCAGC 3 cut(s) 98, 671, 774
BsgI GTGCAG 2 cut(s) 112, 781
Bsh1236I CGCG 3 cut(s) 45, 381, 435
BshNI GGYRCC 1 cut(s) 22
BsiHKAI GWGCWC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 12, 20
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 3 cut(s) 66, 333, 691
BsmAI GTCTC 2 cut(s) 79, 190
BsmBI CGTCTC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 579
Bsp1286I GDGCHC 4 cut(s) 106, 224, 540, 756
Bsp143I GATC 4 cut(s) 115, 120, 178, 427
Bsp1720I GCTNAGC 1 cut(s) 252
Bsp68I TCGCGA 1 cut(s) 381
BspACI CCGC 3 cut(s) 153, 357, 787
BspCNI CTCAG 3 cut(s) 156, 265, 667
BspFNI CGCG 3 cut(s) 45, 381, 435
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 2 cut(s) 186, 435
BspT107I GGYRCC 1 cut(s) 22
BsrDI GCAATG 6 cut(s) 136, 343, 355, 611, 715, 736
BsrI ACTGG 1 cut(s) 685
BssECI CCNNGG 1 cut(s) 26
BssMI GATC 4 cut(s) 115, 120, 178, 427
BssNI GRCGYC 1 cut(s) 23
Bst4CI ACNGT 4 cut(s) 90, 269, 533, 716
BstACI GRCGYC 1 cut(s) 23
BstAPI GCANNNNNTGC 3 cut(s) 354, 544, 768
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 3 cut(s) 164, 252, 675
BstF5I GGATG 2 cut(s) 208, 652
BstFNI CGCG 3 cut(s) 45, 381, 435
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 4 cut(s) 118, 123, 181, 430
BstMAI GTCTC 2 cut(s) 79, 190
BstMBI GATC 4 cut(s) 115, 120, 178, 427
BstMWI GCNNNNNNNGC 6 cut(s) 165, 228, 303, 354, 544, 768
BstNSI RCATGY 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 540
BstUI CGCG 3 cut(s) 45, 381, 435
BstV1I GCAGC 3 cut(s) 98, 671, 774
BstX2I RGATCY 2 cut(s) 120, 427
BstYI RGATCY 2 cut(s) 120, 427
Bsu36I CCTNAGG 1 cut(s) 675
BtrI CACGTC 1 cut(s) 519
BtsCI GGATG 2 cut(s) 208, 652
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 1 cut(s) 472
BtuMI TCGCGA 1 cut(s) 381
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 1 cut(s) 25
Csp6I GTAC 3 cut(s) 64, 682, 688
CviAII CATG 6 cut(s) 185, 280, 463, 622, 670, 726
CviJI RGCY 8 cut(s) 9, 40, 104, 152, 159, 256, 662, 754
CviKI_1 RGCY 8 cut(s) 9, 40, 104, 152, 159, 256, 662, 754
CviQI GTAC 3 cut(s) 64, 682, 688
DdeI CTNAG 3 cut(s) 164, 252, 675
DinI GGCGCC 1 cut(s) 24
DpnI GATC 4 cut(s) 117, 122, 180, 429
DpnII GATC 4 cut(s) 115, 120, 178, 427
Eco24I GRGCYC 2 cut(s) 106, 756
Eco81I CCTNAGG 1 cut(s) 675
EcoT22I ATGCAT 1 cut(s) 549
EcoT38I GRGCYC 2 cut(s) 106, 756
EgeI GGCGCC 1 cut(s) 24
EheI GGCGCC 1 cut(s) 24
Esp3I CGTCTC 1 cut(s) 79
FaeI CATG 6 cut(s) 188, 283, 466, 625, 673, 729
FaqI GGGAC 1 cut(s) 579
FatI CATG 6 cut(s) 184, 279, 462, 621, 669, 725
FauI CCCGC 1 cut(s) 794
Fnu4HI GCNGC 4 cut(s) 112, 153, 660, 763
FokI GGATG 2 cut(s) 215, 659
FriOI GRGCYC 2 cut(s) 106, 756
Fsp4HI GCNGC 4 cut(s) 112, 153, 660, 763
GlaI GCGC 1 cut(s) 24
GluI GCNGC 4 cut(s) 112, 153, 660, 763
HaeII RGCGCY 1 cut(s) 26
HapII CCGG 2 cut(s) 12, 20
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 6 cut(s) 188, 283, 466, 625, 673, 729
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 6 cut(s) 31, 97, 369, 503, 580, 625
HpaII CCGG 2 cut(s) 12, 20
Hpy188I TCNGA 7 cut(s) 30, 53, 61, 84, 120, 165, 402
Hpy188III TCNNGA 2 cut(s) 380, 634
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 4 cut(s) 90, 269, 533, 716
HpyCH4IV ACGT 2 cut(s) 300, 518
HpyF10VI GCNNNNNNNGC 6 cut(s) 165, 228, 303, 354, 544, 768
HpyF3I CTNAG 3 cut(s) 164, 252, 675
HpySE526I ACGT 2 cut(s) 300, 518
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 6 cut(s) 188, 283, 466, 625, 673, 729
HspAI GCGC 1 cut(s) 23
KasI GGCGCC 1 cut(s) 22
Kzo9I GATC 4 cut(s) 115, 120, 178, 427
LmnI GCTCC 3 cut(s) 14, 227, 608
Lsp1109I GCAGC 3 cut(s) 98, 671, 774
LweI GCATC 1 cut(s) 558
MaeII ACGT 2 cut(s) 300, 518
MaeIII GTNAC 1 cut(s) 694
MalI GATC 4 cut(s) 117, 122, 180, 429
MboI GATC 4 cut(s) 115, 120, 178, 427
MboII GAAGA 3 cut(s) 115, 382, 478
MfeI CAATTG 1 cut(s) 766
MflI RGATCY 2 cut(s) 120, 427
MhlI GDGCHC 4 cut(s) 106, 224, 540, 756
MluCI AATT 7 cut(s) 189, 308, 338, 360, 457, 766, 792
Mly113I GGCGCC 1 cut(s) 23
MlyI GAGTC 4 cut(s) 25, 378, 497, 619
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 6 cut(s) 36, 238, 643, 670, 685, 713
Mph1103I ATGCAT 1 cut(s) 549
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 2 cut(s) 348, 447
MspI CCGG 2 cut(s) 12, 20
MspR9I CCNGG 1 cut(s) 20
MunI CAATTG 1 cut(s) 766
MvnI CGCG 3 cut(s) 45, 381, 435
MwoI GCNNNNNNNGC 6 cut(s) 165, 228, 303, 354, 544, 768
NarI GGCGCC 1 cut(s) 23
NciI CCSGG 1 cut(s) 20
NdeII GATC 4 cut(s) 115, 120, 178, 427
NlaIII CATG 6 cut(s) 188, 283, 466, 625, 673, 729
NlaIV GGNNCC 1 cut(s) 24
NruI TCGCGA 1 cut(s) 381
NsiI ATGCAT 1 cut(s) 549
NspI RCATGY 1 cut(s) 729
OliI CACNNNNGTG 1 cut(s) 447
PcsI WCGNNNNNNNCGW 2 cut(s) 57, 378
PfeI GAWTC 2 cut(s) 97, 580
PflFI GACNNNGTC 1 cut(s) 716
PkrI GCNGC 4 cut(s) 113, 154, 661, 764
PleI GAGTC 4 cut(s) 25, 377, 497, 619
PluTI GGCGCC 1 cut(s) 26
PpsI GAGTC 4 cut(s) 25, 377, 497, 619
PspN4I GGNNCC 1 cut(s) 24
PsuI RGATCY 2 cut(s) 120, 427
PsyI GACNNNGTC 1 cut(s) 716
RruI TCGCGA 1 cut(s) 381
RsaI GTAC 3 cut(s) 65, 683, 689
RsaNI GTAC 3 cut(s) 64, 682, 688
RseI CAYNNNNRTG 2 cut(s) 348, 447
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 4 cut(s) 112, 153, 660, 763
Sau3AI GATC 4 cut(s) 115, 120, 178, 427
SchI GAGTC 4 cut(s) 25, 378, 497, 619
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 4 cut(s) 106, 224, 540, 756
SetI ASST 9 cut(s) 11, 161, 249, 258, 303, 521, 664, 696, 802
SfaNI GCATC 1 cut(s) 558
SfcI CTRYAG 1 cut(s) 130
SfoI GGCGCC 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 348, 447
SmlI CTYRAG 1 cut(s) 755
SmoI CTYRAG 1 cut(s) 755
Sse9I AATT 7 cut(s) 189, 308, 338, 360, 457, 766, 792
SsiI CCGC 3 cut(s) 153, 357, 787
SspDI GGCGCC 1 cut(s) 22
SspI AATATT 1 cut(s) 812
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 4 cut(s) 90, 269, 533, 716
TaiI ACGT 2 cut(s) 303, 521
TaqI TCGA 1 cut(s) 100
TasI AATT 7 cut(s) 189, 308, 338, 360, 457, 766, 792
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 2 cut(s) 97, 580
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 1 cut(s) 479
TseI GCWGC 3 cut(s) 111, 659, 762
TspDTI ATGAA 5 cut(s) 201, 332, 479, 542, 765
TspGWI ACGGA 1 cut(s) 566
TspRI CASTG 1 cut(s) 479
Tth111I GACNNNGTC 1 cut(s) 716
XapI RAATTY 4 cut(s) 308, 360, 457, 792
XceI RCATGY 1 cut(s) 729
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.