Rorug06G0230100

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013924
Physical Location & Seq
Reverse (-)
37073860 .. 37077080
3221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0230100.1

Sequence Viewer

Length: 1245 bp
ATGGAAGTAGTCCAAGATGTTGTGATTGTGGGAGCTGGAATTTCTGGCCTTACAACCTCCTTGGGACTTCACAGGCTGGGTATTAGAAGCTTAGTGCTGGAATCATTTGATAGCTTGAGGACAACAGGGTTTGCACTCGCAATATGGACTAATGCGTGGAGGGCTTTAGATGCCCTTGGTATTGGCAATGATATCCGGCAGCAACACCAGGCTCTTCATGGGAATGTGGCTTTCTCAAGAATTTCAGGGCTTCAGATGTTTGAGAAGTCGTATGATGTCAAAGGAAAACTTGGAGACCATGAAGTTTATTGTGTGAAAAGGAAGTTGTTGTTGGAAACCCTTGCAAGGGAACTCCCTAATGGTACCATTAGGTTCTCATCAAAGGTTGTTTCCATTGAGGAATCAGGCTACTTTAAGCTGGTGCATCTTGCAGATGGAACCATCCTCAAAGCCAAGGTTTTGGTTGGTTGTGATGGAGTGAACTCTGTGGTGGCAAAATGGCTGGGCTTCAAGAAGCCAGTTTTTAAAGGGAGATCCGCCGTTAGAGGTTGTGCTGATTTCAACAGCAGTCATGGTTTTGATCCCAAGTTCATGCAGTACTTTGGGAATGGTATTAAAACTGGTACCATTCCTTGTGATGATAAAACTGTTTACTGGTTCTTCGGTTGGTATCCCTCCAACCAAGAGGAAGAGCTAAAGAAAAACCCAGCTCAGTTGAAGCAATATATGTTAAGCAAGCTCGGAAAGGTATCAGATGAAGTAAGGGCTGTTGTGGAAAACACTGATTTGGATGCTTTTAGAGCCGCTCCAGTGACATACAGGCATCCTTGGGAACTTCTTTGGGGAAATATTAGTAAAGGTAATGTATGCGTTGCTGGAGACGCTCTCCACCCCATGGTCCCAGACATTGGCCAAGGCGGCTGTGCTGCATTAGAAGACGGTGTTGTATTAGCAAGGTTTCTCGGTGAGGCACTGTTGAAGAACCAGGAGCAAGAAAATAAAGATAAAGGTGAAGAAGGAAAAGAAAAATATAAGAGGATTGAAATGGGGCTGAATAAGTATGCCAGTGAGAGGAAATGGAGAAGCATAGATCTCACTAGTACATCTAGTGTGGTTAGTTATATACAGGTAGCTGATGGTGGAAAAATAACTGCTTTCTTGAGGGACAAGATTTTCGCTCCAATCCTGACCTGGTTGCTGTTTAAGAAGGCTGATTATGATTGTGGGAAGCTCAGGAGCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

414

Amino Acids

45.92

Weight (kDa)

8.94

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 6 - 325 1.5e-26 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 362, 623
AccB1I GGYRCC 2 cut(s) 362, 623
AccB7I CCANNNNNTGG 2 cut(s) 895, 908
AccBSI CCGCTC 1 cut(s) 806
AciI CCGC 3 cut(s) 537, 804, 918
AclWI GGATC 2 cut(s) 528, 575
AcoI YGGCCR 1 cut(s) 910
AcsI RAATTY 2 cut(s) 39, 240
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 4 cut(s) 364, 599, 625, 1102
AfiI CCNNNNNNNGG 5 cut(s) 345, 346, 895, 908, 1071
AgsI TTSAA 5 cut(s) 511, 562, 718, 979, 1043
AhlI ACTAGT 1 cut(s) 1097
AjnI CCWGG 3 cut(s) 207, 984, 1190
AjuI GAANNNNNNNTTGG 2 cut(s) 314, 346
AluBI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1133, 1231
AluI AGCT 9 cut(s) 35, 90, 114, 418, 694, 710, 739, 1133, 1231
Alw26I GTCTC 2 cut(s) 288, 873
AlwI GGATC 2 cut(s) 528, 575
AoxI GGCC 2 cut(s) 46, 910
ApeKI GCWGC 2 cut(s) 199, 926
ApoI RAATTY 2 cut(s) 39, 240
ArsI GACNNNNNNTTYG 2 cut(s) 1157, 1189
Asp718I GGTACC 2 cut(s) 362, 623
AspS9I GGNCC 1 cut(s) 898
AsuHPI GGTGA 2 cut(s) 977, 1022
AvaII GGWCC 1 cut(s) 898
BalI TGGCCA 1 cut(s) 912
BanI GGYRCC 2 cut(s) 362, 623
BanII GRGCYC 1 cut(s) 1241
BbsI GAAGAC 1 cut(s) 942
BbvI GCAGC 2 cut(s) 211, 913
BccI CCATC 4 cut(s) 428, 449, 467, 1130
BceAI ACGGC 1 cut(s) 524
BciT130I CCWGG 3 cut(s) 209, 986, 1192
BciVI GTATCC 1 cut(s) 681
BcoDI GTCTC 2 cut(s) 288, 873
BcuI ACTAGT 1 cut(s) 1097
BfaI CTAG 2 cut(s) 1098, 1107
BfuI GTATCC 1 cut(s) 681
BglI GCCNNNNNGGC 1 cut(s) 918
BglII AGATCT 1 cut(s) 1090
BisI GCNGC 4 cut(s) 200, 804, 919, 927
BlsI GCNGC 4 cut(s) 201, 805, 920, 928
BmcAI AGTACT 1 cut(s) 599
Bme1390I CCNGG 3 cut(s) 209, 986, 1192
Bme18I GGWCC 1 cut(s) 898
BmgT120I GGNCC 1 cut(s) 898
BmiI GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
BmrFI CCNGG 3 cut(s) 209, 986, 1192
BmsI GCATC 4 cut(s) 160, 433, 781, 832
BpiI GAAGAC 1 cut(s) 942
BplI GAGNNNNNCTC 2 cut(s) 870, 902
BpmI CTGGAG 2 cut(s) 792, 897
Bpu10I CCTNAGC 1 cut(s) 1232
BpuEI CTTGAG 3 cut(s) 136, 220, 1180
BsaI GGTCTC 1 cut(s) 288
BsaJI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
Bsc4I CCNNNNNNNGG 5 cut(s) 345, 346, 895, 908, 1071
Bse1I ACTGG 5 cut(s) 518, 625, 659, 809, 1065
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 3 cut(s) 209, 986, 1192
BseDI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
BseGI GGATG 3 cut(s) 441, 796, 823
BseLI CCNNNNNNNGG 5 cut(s) 345, 346, 895, 908, 1071
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 725
BseNI ACTGG 5 cut(s) 518, 625, 659, 809, 1065
BseXI GCAGC 2 cut(s) 211, 913
BseYI CCCAGC 3 cut(s) 76, 502, 706
BshFI GGCC 2 cut(s) 48, 912
BshNI GGYRCC 2 cut(s) 362, 623
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 3 cut(s) 78, 884, 1178
BslI CCNNNNNNNGG 5 cut(s) 345, 346, 895, 908, 1071
BsmAI GTCTC 2 cut(s) 288, 873
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 3 cut(s) 78, 884, 1178
BsnI GGCC 2 cut(s) 48, 912
Bso31I GGTCTC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 1241
Bsp143I GATC 3 cut(s) 533, 580, 1090
Bsp19I CCATGG 1 cut(s) 894
BspACI CCGC 3 cut(s) 537, 804, 918
BspANI GGCC 2 cut(s) 48, 912
BspCNI CTCAG 2 cut(s) 724, 1245
BspLI GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
BspPI GGATC 2 cut(s) 528, 575
BspQI GCTCTTC 2 cut(s) 219, 684
BspT107I GGYRCC 2 cut(s) 362, 623
BspTNI GGTCTC 1 cut(s) 288
BsrBI CCGCTC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 193
BsrI ACTGG 5 cut(s) 518, 625, 659, 809, 1065
BssECI CCNNGG 6 cut(s) 60, 175, 453, 827, 894, 913
BssMI GATC 3 cut(s) 533, 580, 1090
BssT1I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Bst2UI CCWGG 3 cut(s) 209, 986, 1192
Bst4CI ACNGT 3 cut(s) 649, 941, 975
Bst6I CTCTTC 2 cut(s) 219, 684
BstC8I GCNNGC 1 cut(s) 737
BstDEI CTNAG 3 cut(s) 91, 711, 1232
BstDSI CCRYGG 1 cut(s) 894
BstF5I GGATG 3 cut(s) 441, 796, 823
BstKTI GATC 3 cut(s) 536, 583, 1093
BstMAI GTCTC 2 cut(s) 288, 873
BstMBI GATC 3 cut(s) 533, 580, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 161, 170, 800, 881, 918
BstNI CCWGG 3 cut(s) 209, 986, 1192
BstSCI CCNGG 3 cut(s) 207, 984, 1190
BstV1I GCAGC 2 cut(s) 211, 913
BstV2I GAAGAC 1 cut(s) 942
BstX2I RGATCY 2 cut(s) 533, 1090
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 2 cut(s) 533, 1090
BsuI GTATCC 1 cut(s) 681
BsuRI GGCC 2 cut(s) 48, 912
BtgI CCRYGG 1 cut(s) 894
BtsCI GGATG 3 cut(s) 441, 796, 823
BtsIMutI CAGTG 4 cut(s) 780, 816, 971, 1072
Cac8I GCNNGC 1 cut(s) 737
Cfr13I GGNCC 1 cut(s) 898
CseI GACGC 1 cut(s) 890
CsiI ACCWGGT 1 cut(s) 1190
Csp6I GTAC 4 cut(s) 363, 598, 624, 1101
CviAII CATG 5 cut(s) 218, 299, 572, 592, 895
CviQI GTAC 4 cut(s) 363, 598, 624, 1101
DdeI CTNAG 3 cut(s) 91, 711, 1232
DpnI GATC 3 cut(s) 535, 582, 1092
DpnII GATC 3 cut(s) 533, 580, 1090
DraI TTTAAA 1 cut(s) 526
EaeI YGGCCR 1 cut(s) 910
Eam1104I CTCTTC 2 cut(s) 219, 684
EarI CTCTTC 2 cut(s) 219, 684
EciI GGCGGA 1 cut(s) 526
Eco130I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Eco24I GRGCYC 1 cut(s) 1241
Eco31I GGTCTC 1 cut(s) 288
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 1 cut(s) 898
Eco57I CTGAAG 1 cut(s) 236
EcoRII CCWGG 3 cut(s) 207, 984, 1190
EcoRV GATATC 1 cut(s) 193
EcoT14I CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
EcoT38I GRGCYC 1 cut(s) 1241
ErhI CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
Esp3I CGTCTC 1 cut(s) 873
FaeI CATG 5 cut(s) 221, 302, 575, 595, 898
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 3 cut(s) 78, 884, 1178
FatI CATG 5 cut(s) 217, 298, 571, 591, 894
Fnu4HI GCNGC 4 cut(s) 200, 804, 919, 927
FokI GGATG 3 cut(s) 428, 803, 810
FriOI GRGCYC 1 cut(s) 1241
Fsp4HI GCNGC 4 cut(s) 200, 804, 919, 927
FspBI CTAG 2 cut(s) 1098, 1107
GluI GCNGC 4 cut(s) 200, 804, 919, 927
GsaI CCCAGC 3 cut(s) 80, 506, 710
GsuI CTGGAG 2 cut(s) 792, 897
HaeIII GGCC 2 cut(s) 48, 912
HapII CCGG 1 cut(s) 196
HgaI GACGC 1 cut(s) 890
Hin1II CATG 5 cut(s) 221, 302, 575, 595, 898
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 101, 401
HpaII CCGG 1 cut(s) 196
HphI GGTGA 2 cut(s) 977, 1022
Hpy166II GTNNAC 2 cut(s) 481, 652
Hpy188I TCNGA 3 cut(s) 255, 743, 754
Hpy188III TCNNGA 5 cut(s) 237, 511, 1159, 1186, 1234
Hpy8I GTNNAC 2 cut(s) 481, 652
HpyAV CCTTC 2 cut(s) 1010, 1201
HpyCH4III ACNGT 3 cut(s) 649, 941, 975
HpyCH4V TGCA 6 cut(s) 134, 344, 424, 431, 595, 929
HpyF10VI GCNNNNNNNGC 5 cut(s) 161, 170, 800, 881, 918
HpyF3I CTNAG 3 cut(s) 91, 711, 1232
Hsp92II CATG 5 cut(s) 221, 302, 575, 595, 898
KpnI GGTACC 2 cut(s) 366, 627
Kzo9I GATC 3 cut(s) 533, 580, 1090
LguI GCTCTTC 2 cut(s) 219, 684
LmnI GCTCC 5 cut(s) 32, 811, 988, 1183, 1236
Lsp1109I GCAGC 2 cut(s) 211, 913
LweI GCATC 4 cut(s) 160, 433, 781, 832
MabI ACCWGGT 1 cut(s) 1190
MaeI CTAG 2 cut(s) 1098, 1107
MaeIII GTNAC 1 cut(s) 811
MalI GATC 3 cut(s) 535, 582, 1092
MbiI CCGCTC 1 cut(s) 806
MboI GATC 3 cut(s) 533, 580, 1090
MboII GAAGA 6 cut(s) 206, 652, 701, 947, 991, 1025
MflI RGATCY 2 cut(s) 533, 1090
MhlI GDGCHC 1 cut(s) 1241
MlsI TGGCCA 1 cut(s) 912
MluCI AATT 2 cut(s) 39, 240
MluNI TGGCCA 1 cut(s) 912
MmeI TCCRAC 2 cut(s) 312, 702
Mox20I TGGCCA 1 cut(s) 912
MscI TGGCCA 1 cut(s) 912
MseI TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 912
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 3 cut(s) 209, 986, 1192
MvaI CCWGG 3 cut(s) 209, 986, 1192
MwoI GCNNNNNNNGC 5 cut(s) 161, 170, 800, 881, 918
NcoI CCATGG 1 cut(s) 894
NdeII GATC 3 cut(s) 533, 580, 1090
NlaIII CATG 5 cut(s) 221, 302, 575, 595, 898
NlaIV GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
NmuCI GTSAC 1 cut(s) 811
PciSI GCTCTTC 2 cut(s) 219, 684
PfeI GAWTC 2 cut(s) 101, 401
PflMI CCANNNNNTGG 2 cut(s) 895, 908
PkrI GCNGC 4 cut(s) 201, 805, 920, 928
Psp6I CCWGG 3 cut(s) 207, 984, 1190
PspFI CCCAGC 3 cut(s) 76, 502, 706
PspGI CCWGG 3 cut(s) 207, 984, 1190
PspN4I GGNNCC 5 cut(s) 364, 439, 625, 900, 1238
PspPI GGNCC 1 cut(s) 898
PsuI RGATCY 2 cut(s) 533, 1090
RsaI GTAC 4 cut(s) 364, 599, 625, 1102
RsaNI GTAC 4 cut(s) 363, 598, 624, 1101
RseI CAYNNNNRTG 1 cut(s) 222
SapI GCTCTTC 2 cut(s) 219, 684
SaqAI TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
SatI GCNGC 4 cut(s) 200, 804, 919, 927
Sau3AI GATC 3 cut(s) 533, 580, 1090
Sau96I GGNCC 1 cut(s) 898
ScaI AGTACT 1 cut(s) 599
ScrFI CCNGG 3 cut(s) 209, 986, 1192
SduI GDGCHC 1 cut(s) 1241
SexAI ACCWGGT 1 cut(s) 1190
SfaNI GCATC 4 cut(s) 160, 433, 781, 832
SinI GGWCC 1 cut(s) 898
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 115, 235, 1159
SmoI CTYRAG 3 cut(s) 115, 235, 1159
SpeI ACTAGT 1 cut(s) 1097
Sse9I AATT 2 cut(s) 39, 240
SsiI CCGC 3 cut(s) 537, 804, 918
SspI AATATT 1 cut(s) 850
SspMI CTAG 2 cut(s) 1098, 1107
StyD4I CCNGG 3 cut(s) 207, 984, 1190
StyI CCWWGG 6 cut(s) 60, 175, 453, 827, 894, 913
TaaI ACNGT 3 cut(s) 649, 941, 975
TasI AATT 2 cut(s) 39, 240
TatI WGTACW 2 cut(s) 597, 1100
TauI GCSGC 2 cut(s) 806, 921
TfiI GAWTC 2 cut(s) 101, 401
Tru1I TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
Tru9I TTAA 6 cut(s) 414, 525, 615, 731, 1203, 1243
TscAI CASTG 4 cut(s) 787, 816, 978, 1072
TseFI GTSAC 1 cut(s) 811
TseI GCWGC 2 cut(s) 199, 926
Tsp45I GTSAC 1 cut(s) 811
TspDTI ATGAA 4 cut(s) 206, 315, 580, 771
TspRI CASTG 4 cut(s) 787, 816, 978, 1072
Van91I CCANNNNNTGG 2 cut(s) 895, 908
VpaK11BI GGWCC 1 cut(s) 898
XapI RAATTY 2 cut(s) 39, 240
XcmI CCANNNNNNNNNTGG 2 cut(s) 215, 1188
XspI CTAG 2 cut(s) 1098, 1107
ZrmI AGTACT 1 cut(s) 599
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.