pycom03g22110

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0013924
Physical Location & Seq
Reverse (-)
22294491 .. 22298524
4034 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g22110.7

Sequence Viewer

Length: 888 bp
ATGTTTGATTCCGTAGAGACAGCTACCTTGTCTCCTCAAACACTCTTTACCTCCAATCCATTCAACAACTCCGGCATTCTCCTGCCGCAGCAACCACCCATGGAGGAAGACTCTTCGGCTGCGCCGCCCACTCTTACCCGCCAAGATTTCGGAAAGATGGAATACGGATGCGTTCATTATCGGAGACGATGCAAGATTCGTGCCCCTTGCTGCGACCAGATTTTCCCCTGCCGCCACTGCCACAACGAAGCCGCGAGCTCCCTAAGCAACCCGAAAGACCGCCATGAGCTTGTCAGGCACGATGTCAAGCAGGTTGTATGCTCAGTCTGCAACACCGAGCAACAGGTTGCTCAGCTTTGTTCTAACTGCGGTGTCAACATGGGGGAATACTATTGTGACATCTGCAAGTTCTTCGATGACGATAATTTCTTCCATTGTCAGAAGTGTGGTTCTTGCTATGCAGTGGCTCTGCGTGATAACCACTTATGTGTAGAAGACTCAATGAAGAATCACTGCCCTGTTTGCTATGAGTATCTTTTTGACTCGGTTAAAGTCACAAATATTATGAAATATCGCTGTCCCATTTGCTCCAAGGCAGTGCTTGACATGGGTAATACGTGGAACTTGTTGGATGCAGAAATTGAAGCCACTGCCATGCCTGAGGAATACCAATATGAGGTATCAATTCTTTGCAACGACTGCAACACAACTAGCAAAGCCCCCTTTCACATATTTGGACACAAGTGCGGCAACTGCAATTCATACAACACCAGATGCAGATTAGACTCTTTTGGCTATGCTTTCATCGGTTTGGACCAGAATTGTCCTATCGTGCCTCTGCCGCGTGTACACCAAGTGCGTGAAAGAATCTACAGCTGCTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

296

Amino Acids

33.59

Weight (kDa)

5.87

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 301
AccII CGCG 2 cut(s) 254, 844
AciI CCGC 9 cut(s) 86, 125, 139, 232, 252, 280, 369, 747, 842
AdeI CACNNNGTG 1 cut(s) 856
AfaI GTAC 1 cut(s) 849
AfiI CCNNNNNNNGG 1 cut(s) 676
AgsI TTSAA 2 cut(s) 64, 644
AleI CACNNNNGTG 1 cut(s) 486
AluBI AGCT 5 cut(s) 23, 258, 289, 355, 876
AluI AGCT 5 cut(s) 23, 258, 289, 355, 876
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 3 cut(s) 11, 36, 178
AlwNI CAGNNNCTG 1 cut(s) 879
ApeKI GCWGC 4 cut(s) 88, 119, 210, 876
AspLEI GCGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 814
AvaII GGWCC 1 cut(s) 814
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 2 cut(s) 114, 501
Bbv12I GWGCWC 1 cut(s) 260
BbvI GCAGC 4 cut(s) 100, 106, 197, 863
BccI CCATC 1 cut(s) 151
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BcoDI GTCTC 3 cut(s) 11, 36, 178
BfaI CTAG 1 cut(s) 711
BfmI CTRYAG 1 cut(s) 871
BfuAI ACCTGC 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 351
Bme18I GGWCC 1 cut(s) 814
BmgT120I GGNCC 1 cut(s) 814
BmsI GCATC 4 cut(s) 158, 179, 622, 764
BpiI GAAGAC 2 cut(s) 114, 501
BplI GAGNNNNNCTC 2 cut(s) 95, 127
Bpu10I CCTNAGC 1 cut(s) 263
Bpu1102I GCTNAGC 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 618
BsaJI CCNNGG 2 cut(s) 99, 591
BsaXI ACNNNNNCTCC 2 cut(s) 16, 46
Bsc4I CCNNNNNNNGG 1 cut(s) 676
Bse21I CCTNAGG 1 cut(s) 660
BseDI CCNNGG 2 cut(s) 99, 591
BseGI GGATG 2 cut(s) 173, 637
BseLI CCNNNNNNNGG 1 cut(s) 676
BseMII CTCAG 3 cut(s) 336, 365, 651
BseRI GAGGAG 1 cut(s) 24
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 4 cut(s) 100, 106, 197, 863
Bsh1236I CGCG 2 cut(s) 254, 844
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 1 cut(s) 72
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 1 cut(s) 676
BsmAI GTCTC 3 cut(s) 11, 36, 178
BsmBI CGTCTC 1 cut(s) 178
BsmFI GGGAC 1 cut(s) 564
BsmI GAATGC 1 cut(s) 75
Bsp1286I GDGCHC 2 cut(s) 205, 260
Bsp1407I TGTACA 1 cut(s) 847
Bsp1720I GCTNAGC 1 cut(s) 351
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 9 cut(s) 86, 125, 139, 232, 252, 280, 369, 747, 842
BspCNI CTCAG 3 cut(s) 335, 364, 652
BspFNI CGCG 2 cut(s) 254, 844
BspMI ACCTGC 1 cut(s) 301
BsrGI TGTACA 1 cut(s) 847
BssECI CCNNGG 2 cut(s) 99, 591
BssT1I CCWWGG 2 cut(s) 99, 591
Bst6I CTCTTC 1 cut(s) 118
BstAPI GCANNNNNTGC 1 cut(s) 699
BstAUI TGTACA 1 cut(s) 847
BstBAI YACGTR 1 cut(s) 618
BstC8I GCNNGC 1 cut(s) 256
BstDEI CTNAG 4 cut(s) 263, 322, 351, 660
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 2 cut(s) 173, 637
BstFNI CGCG 2 cut(s) 254, 844
BstHHI GCGC 1 cut(s) 124
BstMAI GTCTC 3 cut(s) 11, 36, 178
BstMWI GCNNNNNNNGC 8 cut(s) 237, 264, 295, 327, 522, 699, 753, 841
BstSFI CTRYAG 1 cut(s) 871
BstSLI GKGCMC 1 cut(s) 205
BstUI CGCG 2 cut(s) 254, 844
BstV1I GCAGC 4 cut(s) 100, 106, 197, 863
BstV2I GAAGAC 2 cut(s) 114, 501
Bsu36I CCTNAGG 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 2 cut(s) 173, 637
BtsI GCAGTG 5 cut(s) 235, 468, 511, 603, 648
BtsIMutI CAGTG 5 cut(s) 235, 468, 511, 603, 648
BveI ACCTGC 1 cut(s) 301
Cac8I GCNNGC 1 cut(s) 256
CaiI CAGNNNCTG 1 cut(s) 879
CfoI GCGC 1 cut(s) 124
Cfr13I GGNCC 1 cut(s) 814
Csp6I GTAC 1 cut(s) 848
CviAII CATG 5 cut(s) 100, 284, 379, 607, 655
CviQI GTAC 1 cut(s) 848
DdeI CTNAG 4 cut(s) 263, 322, 351, 660
DraIII CACNNNGTG 1 cut(s) 856
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
Ecl136II GAGCTC 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 99, 591
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 814
Eco53kI GAGCTC 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 660
EcoICRI GAGCTC 1 cut(s) 258
EcoT14I CCWWGG 2 cut(s) 99, 591
EcoT38I GRGCYC 1 cut(s) 260
ErhI CCWWGG 2 cut(s) 99, 591
Esp3I CGTCTC 1 cut(s) 178
FaeI CATG 5 cut(s) 103, 287, 382, 610, 658
FaqI GGGAC 1 cut(s) 564
FatI CATG 5 cut(s) 99, 283, 378, 606, 654
FauI CCCGC 1 cut(s) 146
FokI GGATG 2 cut(s) 180, 644
FriOI GRGCYC 1 cut(s) 260
FspBI CTAG 1 cut(s) 711
GlaI GCGC 1 cut(s) 123
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 124
Hin1II CATG 5 cut(s) 103, 287, 382, 610, 658
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HincII GTYRAC 1 cut(s) 376
HindII GTYRAC 1 cut(s) 376
HinfI GANTC 8 cut(s) 8, 110, 196, 497, 508, 542, 785, 867
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 3 cut(s) 376, 848, 850
Hpy188I TCNGA 3 cut(s) 152, 183, 441
Hpy8I GTNNAC 3 cut(s) 376, 848, 850
HpyCH4IV ACGT 1 cut(s) 617
HpyCH4V TGCA 9 cut(s) 192, 330, 405, 461, 635, 693, 702, 756, 777
HpyF10VI GCNNNNNNNGC 8 cut(s) 237, 264, 295, 327, 522, 699, 753, 841
HpyF3I CTNAG 4 cut(s) 263, 322, 351, 660
HpySE526I ACGT 1 cut(s) 617
Hsp92II CATG 5 cut(s) 103, 287, 382, 610, 658
HspAI GCGC 1 cut(s) 122
LmnI GCTCC 2 cut(s) 263, 593
Lsp1109I GCAGC 4 cut(s) 100, 106, 197, 863
LweI GCATC 4 cut(s) 158, 179, 622, 764
MaeI CTAG 1 cut(s) 711
MaeII ACGT 1 cut(s) 617
MaeIII GTNAC 2 cut(s) 395, 553
MboII GAAGA 6 cut(s) 105, 119, 403, 421, 506, 517
MhlI GDGCHC 2 cut(s) 205, 260
MluCI AATT 6 cut(s) 424, 639, 684, 757, 820, 883
MlyI GAGTC 4 cut(s) 104, 491, 536, 779
MmeI TCCRAC 1 cut(s) 609
MnlI CCTC 6 cut(s) 45, 61, 97, 655, 670, 846
MseI TTAA 1 cut(s) 549
MslI CAYNNNNRTG 2 cut(s) 486, 653
MspA1I CMGCKG 1 cut(s) 876
MspI CCGG 1 cut(s) 72
Mva1269I GAATGC 1 cut(s) 75
MvnI CGCG 2 cut(s) 254, 844
MwoI GCNNNNNNNGC 8 cut(s) 237, 264, 295, 327, 522, 699, 753, 841
NcoI CCATGG 1 cut(s) 99
NlaIII CATG 5 cut(s) 103, 287, 382, 610, 658
NmuCI GTSAC 2 cut(s) 395, 553
OliI CACNNNNGTG 1 cut(s) 486
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 8, 196, 508, 867
PleI GAGTC 4 cut(s) 104, 491, 536, 779
PpsI GAGTC 4 cut(s) 104, 491, 536, 779
Ppu21I YACGTR 1 cut(s) 618
Psp124BI GAGCTC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 879
PvuII CAGCTG 1 cut(s) 876
RsaI GTAC 1 cut(s) 849
RsaNI GTAC 1 cut(s) 848
RseI CAYNNNNRTG 2 cut(s) 486, 653
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 549
Sau96I GGNCC 1 cut(s) 814
SchI GAGTC 4 cut(s) 104, 491, 536, 779
SduI GDGCHC 2 cut(s) 205, 260
SfaNI GCATC 4 cut(s) 158, 179, 622, 764
SfcI CTRYAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 814
SmiMI CAYNNNNRTG 2 cut(s) 486, 653
Sse9I AATT 6 cut(s) 424, 639, 684, 757, 820, 883
SsiI CCGC 9 cut(s) 86, 125, 139, 232, 252, 280, 369, 747, 842
SspI AATATT 1 cut(s) 562
SspMI CTAG 1 cut(s) 711
SstI GAGCTC 1 cut(s) 260
StyI CCWWGG 2 cut(s) 99, 591
TaiI ACGT 1 cut(s) 620
TaqI TCGA 1 cut(s) 414
TasI AATT 6 cut(s) 424, 639, 684, 757, 820, 883
TatI WGTACW 1 cut(s) 847
TauI GCSGC 6 cut(s) 88, 127, 234, 254, 750, 844
TfiI GAWTC 4 cut(s) 8, 196, 508, 867
Tru1I TTAA 1 cut(s) 549
Tru9I TTAA 1 cut(s) 549
TscAI CASTG 5 cut(s) 242, 468, 518, 603, 655
TseFI GTSAC 2 cut(s) 395, 553
TseI GCWGC 4 cut(s) 88, 119, 210, 876
Tsp45I GTSAC 2 cut(s) 395, 553
TspDTI ATGAA 5 cut(s) 164, 518, 581, 750, 793
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 5 cut(s) 242, 468, 518, 603, 655
VpaK11BI GGWCC 1 cut(s) 814
XspI CTAG 1 cut(s) 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.