Prupe.8G254000_v2.0.a1

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0013924
Physical Location & Seq
Reverse (-)
21731728 .. 21734726
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G254000.1

Sequence Viewer

Length: 822 bp
ATGGAAGACTCTGCTTCTCCTGCTTCTCCGCCTCCGACCAAGAGTCGACAAGATTTCGGAAAATTGGATTACGGATGCGACCATTATCGGAGACGATGCAAGATTCGAGCCCCTTGCTGCGACCAGATTTTCCCCTGCCGCCACTGCCACAACGAAGCCGCGAGCTCCCTCAGCAACCCCAAAGATCGCCATGAACTTGTCAGGCAGGATGTGAAGCAAGTTGTATGCTCCGTTTGCAATACAGAGCAACAGGTTGCTCAGCTTTGTTCTAACTGTGGTGTCAACATGGGAGAATATTATTGCGACATTTGCAAGTTCTATGATGATGATATCAGCAAGCAGCAATTTCATTGCAATGAGTGCGGGATTTGTAGAGTCGGTGGTCGTGACCACTTCTTTCATTGTCAGAAGTGTGGCTCTTGCTATGTAGTGGAACTGCGTGATAATCACTTATGTGTAGAAAACTCCATGAAGAATCACTGCCCTGTTTGCTATGAGTATCTTTTTGATTCGGTTAAAGGCACAACAATTATGAAGTGTGGACACACAATGCATTCAGAATGCTTCATTGAGATGCAAAGACAAACTCAGTATCGTTGTCCCATTTGCTCCAAGACAATACGCGACATGGATTCTATTTGGAGATTGTTGGATGATGATATTGAAGCCACTGCCATGCCCGAGGAATACCAATATGAGGTATCAATTCTTTGCAACGATTGCAACACAACTAGCAACGCTCCCTTTCACATTTTTGGGCTCAAGTGCAGCAACTGCGATTCATATAACACCCGAAGAATTTCAGCTGCAGATCATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

274

Amino Acids

31.4

Weight (kDa)

5.99

Isoelectric Point (pI)

56.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 46
AccII CGCG 2 cut(s) 161, 624
AciI CCGC 4 cut(s) 29, 139, 159, 363
AcsI RAATTY 1 cut(s) 798
AfiI CCNNNNNNNGG 1 cut(s) 697
AgsI TTSAA 1 cut(s) 665
AhdI GACNNNNNGTC 1 cut(s) 42
AleI CACNNNNGTG 1 cut(s) 453
AluBI AGCT 3 cut(s) 165, 262, 806
AluI AGCT 3 cut(s) 165, 262, 806
Alw21I GWGCWC 1 cut(s) 167
Alw26I GTCTC 1 cut(s) 85
AlwNI CAGNNNCTG 1 cut(s) 774
Ama87I CYCGRG 1 cut(s) 680
ApeKI GCWGC 4 cut(s) 117, 340, 768, 806
ApoI RAATTY 1 cut(s) 798
Asp700I GAANNNNTTC 1 cut(s) 799
AvaI CYCGRG 1 cut(s) 680
BanII GRGCYC 3 cut(s) 112, 167, 762
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 167
BbvCI CCTCAGC 1 cut(s) 170
BbvI GCAGC 4 cut(s) 104, 352, 780, 793
BcgI CGANNNNNNTGC 2 cut(s) 96, 130
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 732
BfmI CTRYAG 1 cut(s) 807
BisI GCNGC 6 cut(s) 118, 139, 159, 341, 769, 807
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 6 cut(s) 119, 140, 160, 342, 770, 808
BmeRI GACNNNNNGTC 1 cut(s) 42
BmeT110I CYCGRG 1 cut(s) 680
BmsI GCATC 3 cut(s) 65, 86, 564
BpiI GAAGAC 1 cut(s) 12
Bpu10I CCTNAGC 1 cut(s) 170
Bpu1102I GCTNAGC 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 746
BsaJI CCNNGG 1 cut(s) 681
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse3DI GCAATG 2 cut(s) 349, 361
BseDI CCNNGG 1 cut(s) 681
BseGI GGATG 3 cut(s) 80, 214, 658
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMI GCAATG 2 cut(s) 349, 361
BseMII CTCAG 3 cut(s) 184, 272, 602
BseXI GCAGC 4 cut(s) 104, 352, 780, 793
BsgI GTGCAG 1 cut(s) 787
Bsh1236I CGCG 2 cut(s) 161, 624
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 1 cut(s) 680
BslFI GGGAC 1 cut(s) 585
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 1 cut(s) 85
BsmBI CGTCTC 1 cut(s) 85
BsmFI GGGAC 1 cut(s) 585
BsmI GAATGC 2 cut(s) 553, 566
BsoBI CYCGRG 1 cut(s) 680
Bsp1286I GDGCHC 3 cut(s) 112, 167, 762
Bsp143I GATC 2 cut(s) 184, 811
Bsp1720I GCTNAGC 1 cut(s) 258
BspACI CCGC 4 cut(s) 29, 139, 159, 363
BspCNI CTCAG 3 cut(s) 183, 271, 601
BspFNI CGCG 2 cut(s) 161, 624
BspMAI CTGCAG 1 cut(s) 811
BsrDI GCAATG 2 cut(s) 349, 361
BssECI CCNNGG 1 cut(s) 681
BssMI GATC 2 cut(s) 184, 811
Bst4CI ACNGT 1 cut(s) 275
BstAPI GCANNNNNTGC 3 cut(s) 360, 720, 774
BstC8I GCNNGC 2 cut(s) 163, 338
BstDEI CTNAG 3 cut(s) 170, 258, 588
BstF5I GGATG 3 cut(s) 80, 214, 658
BstFNI CGCG 2 cut(s) 161, 624
BstKTI GATC 2 cut(s) 187, 814
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 2 cut(s) 184, 811
BstMWI GCNNNNNNNGC 9 cut(s) 20, 144, 171, 234, 309, 360, 489, 720, 774
BstSFI CTRYAG 1 cut(s) 807
BstUI CGCG 2 cut(s) 161, 624
BstV1I GCAGC 4 cut(s) 104, 352, 780, 793
BstV2I GAAGAC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 80, 214, 658
BtsI GCAGTG 3 cut(s) 142, 478, 669
BtsIMutI CAGTG 3 cut(s) 142, 478, 669
Cac8I GCNNGC 2 cut(s) 163, 338
CaiI CAGNNNCTG 1 cut(s) 774
CviAII CATG 5 cut(s) 191, 286, 469, 628, 676
CviJI RGCY 8 cut(s) 110, 158, 165, 262, 417, 668, 760, 806
CviKI_1 RGCY 8 cut(s) 110, 158, 165, 262, 417, 668, 760, 806
DdeI CTNAG 3 cut(s) 170, 258, 588
DpnI GATC 2 cut(s) 186, 813
DpnII GATC 2 cut(s) 184, 811
DriI GACNNNNNGTC 1 cut(s) 42
Eam1105I GACNNNNNGTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 18
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 3 cut(s) 112, 167, 762
Eco32I GATATC 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 680
EcoICRI GAGCTC 1 cut(s) 165
EcoRV GATATC 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 555
EcoT38I GRGCYC 3 cut(s) 112, 167, 762
Esp3I CGTCTC 1 cut(s) 85
FaeI CATG 5 cut(s) 194, 289, 472, 631, 679
FaqI GGGAC 1 cut(s) 585
FatI CATG 5 cut(s) 190, 285, 468, 627, 675
FauI CCCGC 1 cut(s) 356
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 6 cut(s) 118, 139, 159, 341, 769, 807
FokI GGATG 3 cut(s) 87, 221, 665
FriOI GRGCYC 3 cut(s) 112, 167, 762
Fsp4HI GCNGC 6 cut(s) 118, 139, 159, 341, 769, 807
FspBI CTAG 1 cut(s) 732
GluI GCNGC 6 cut(s) 118, 139, 159, 341, 769, 807
Hin1II CATG 5 cut(s) 194, 289, 472, 631, 679
HincII GTYRAC 2 cut(s) 47, 283
HindII GTYRAC 2 cut(s) 47, 283
HinfI GANTC 8 cut(s) 8, 43, 103, 375, 475, 509, 632, 779
Hpy166II GTNNAC 3 cut(s) 47, 283, 542
Hpy188I TCNGA 5 cut(s) 36, 59, 90, 408, 559
Hpy188III TCNNGA 1 cut(s) 386
Hpy8I GTNNAC 3 cut(s) 47, 283, 542
HpyCH4III ACNGT 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 9 cut(s) 20, 144, 171, 234, 309, 360, 489, 720, 774
HpyF3I CTNAG 3 cut(s) 170, 258, 588
Hsp92II CATG 5 cut(s) 194, 289, 472, 631, 679
Kzo9I GATC 2 cut(s) 184, 811
LmnI GCTCC 4 cut(s) 170, 233, 614, 745
LpnPI CCDG 7 cut(s) 33, 137, 148, 187, 191, 236, 498
Lsp1109I GCAGC 4 cut(s) 104, 352, 780, 793
LweI GCATC 3 cut(s) 65, 86, 564
MaeI CTAG 1 cut(s) 732
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 186, 813
MboI GATC 2 cut(s) 184, 811
MboII GAAGA 3 cut(s) 17, 484, 807
MhlI GDGCHC 3 cut(s) 112, 167, 762
MluCI AATT 5 cut(s) 62, 344, 528, 705, 798
MlyI GAGTC 3 cut(s) 2, 52, 384
MmeI TCCRAC 2 cut(s) 59, 630
MnlI CCTC 4 cut(s) 42, 179, 676, 691
Mph1103I ATGCAT 1 cut(s) 555
MroXI GAANNNNTTC 1 cut(s) 799
MseI TTAA 1 cut(s) 516
MslI CAYNNNNRTG 4 cut(s) 354, 453, 572, 674
MspA1I CMGCKG 1 cut(s) 806
Mva1269I GAATGC 2 cut(s) 553, 566
MvnI CGCG 2 cut(s) 161, 624
MwoI GCNNNNNNNGC 9 cut(s) 20, 144, 171, 234, 309, 360, 489, 720, 774
NdeII GATC 2 cut(s) 184, 811
NlaIII CATG 5 cut(s) 194, 289, 472, 631, 679
NmuCI GTSAC 1 cut(s) 386
NsiI ATGCAT 1 cut(s) 555
OliI CACNNNNGTG 1 cut(s) 453
PctI GAATGC 2 cut(s) 553, 566
PdmI GAANNNNTTC 1 cut(s) 799
PfeI GAWTC 5 cut(s) 103, 475, 509, 632, 779
PkrI GCNGC 6 cut(s) 119, 140, 160, 342, 770, 808
PleI GAGTC 3 cut(s) 2, 51, 383
PpsI GAGTC 3 cut(s) 2, 51, 383
Psp124BI GAGCTC 1 cut(s) 167
PstI CTGCAG 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 774
PvuII CAGCTG 1 cut(s) 806
RseI CAYNNNNRTG 4 cut(s) 354, 453, 572, 674
SacI GAGCTC 1 cut(s) 167
SalI GTCGAC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 516
SatI GCNGC 6 cut(s) 118, 139, 159, 341, 769, 807
Sau3AI GATC 2 cut(s) 184, 811
SchI GAGTC 3 cut(s) 2, 52, 384
SduI GDGCHC 3 cut(s) 112, 167, 762
SetI ASST 5 cut(s) 167, 255, 264, 702, 808
SfaNI GCATC 3 cut(s) 65, 86, 564
SfcI CTRYAG 1 cut(s) 807
SmiMI CAYNNNNRTG 4 cut(s) 354, 453, 572, 674
SmlI CTYRAG 1 cut(s) 761
SmoI CTYRAG 1 cut(s) 761
Sse9I AATT 5 cut(s) 62, 344, 528, 705, 798
SsiI CCGC 4 cut(s) 29, 139, 159, 363
SspI AATATT 1 cut(s) 296
SspMI CTAG 1 cut(s) 732
SstI GAGCTC 1 cut(s) 167
TaaI ACNGT 1 cut(s) 275
TaqI TCGA 2 cut(s) 46, 106
TasI AATT 5 cut(s) 62, 344, 528, 705, 798
TauI GCSGC 2 cut(s) 141, 161
TfiI GAWTC 5 cut(s) 103, 475, 509, 632, 779
Tru1I TTAA 1 cut(s) 516
Tru9I TTAA 1 cut(s) 516
TscAI CASTG 3 cut(s) 149, 485, 676
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 4 cut(s) 117, 340, 768, 806
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 7 cut(s) 207, 338, 389, 485, 548, 556, 771
TspGWI ACGGA 2 cut(s) 87, 220
TspRI CASTG 3 cut(s) 149, 485, 676
XapI RAATTY 1 cut(s) 798
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 799
XspI CTAG 1 cut(s) 732
Zsp2I ATGCAT 1 cut(s) 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.