FvH4_2g24920

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0013924
Physical Location & Seq
Reverse (-)
20255424 .. 20258835
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g24920.t1

Sequence Viewer

Length: 792 bp
ATGGAAAACTCCGACTCTCCGGCGCAGAAGCCACCGAATTTTGAAAAGTTCGCGCACGGGTGTGACCATTATCGGAGACGCTGCAAGATTCGAGCCCCTTGCTGCGATCAGATCTTCGGCTGTAGACATTGCCACAACGAAGCCACCAGCTCTCTGAGTAATCCGAAGGATCGGCATGAGATTGTGAGGCAGGATGTGAAGCAGGTGGTGTGCTCCATTTGCGACACTGAGCAAGAGGTTGCTCAGCTTTGCGCAAACTGCGGTGTGCAGATGGGAGAGTATTACTGCGATATCTGCAAGTTCTTTGATGATGATACCATGAAAGAACAATTTCATTGCAATGAGTGCGGAATTTGTAGAGTCGGTGGACGTGACAATTTTTTCCATTGTCAGAAATGTGGATCTTGCTATGGAGTGGATCTACGCGGTAATCACAATTGTATAGAAAATTCCATGAAGAGCCAGTGCCCTGTCTGTTACGAGTATCTCTTTGACTCGGTTAAAAGAACGCAGATAATGAACTGTGGGCACACGATGCATATGGATTGCTTCATTGGGATGCAGTCACAGAATCAGTCTCGTTGTCCCCTTTGCTCCAAGACAATGGTCAACATGAGTGGTTACTGGAGTCTGTTGGATGCAGAGATCGCAACTACTCCCATGCCTGAAGAGTACCTGTATGAGGTTACTATCCTCTGCAATGATTGTGTGGTCGTCAACATTGACATTCAATTGGTTAGAAAAGTCAATGTTACACAGATTCAGAGGACCGCTATCCATTCACCAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

264

Amino Acids

30.09

Weight (kDa)

5.98

Isoelectric Point (pI)

50.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 21 - 94 1.5e-20 CHY zinc finger
zf-RING_2 PF13639 155 - 198 1.3e-07 Ring finger domain
zf-C3HC4_2 PF13923 155 - 198 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zinc_ribbon_6 PF14599 203 - 236 8.3e-10 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc16I TGCGCA 1 cut(s) 253
Acc36I ACCTGC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 124
AccII CGCG 2 cut(s) 53, 426
AciI CCGC 4 cut(s) 261, 348, 426, 771
AclWI GGATC 3 cut(s) 177, 409, 426
AcsI RAATTY 3 cut(s) 37, 351, 448
AcuI CTGAAG 1 cut(s) 687
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 1 cut(s) 682
AgsI TTSAA 2 cut(s) 44, 731
AjiI CACGTC 1 cut(s) 371
AleI CACNNNNGTG 1 cut(s) 60
AluBI AGCT 2 cut(s) 150, 247
AluI AGCT 2 cut(s) 150, 247
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 70, 582
AlwI GGATC 3 cut(s) 177, 409, 426
ApeKI GCWGC 2 cut(s) 81, 102
ApoI RAATTY 3 cut(s) 37, 351, 448
Asp700I GAANNNNTTC 1 cut(s) 330
AspLEI GCGC 3 cut(s) 25, 55, 254
AspS9I GGNCC 1 cut(s) 768
AsuHPI GGTGA 1 cut(s) 774
AvaII GGWCC 1 cut(s) 768
BaeGI GKGCMC 2 cut(s) 470, 531
BanII GRGCYC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 68, 89
BccI CCATC 1 cut(s) 265
BcgI CGANNNNNNTGC 2 cut(s) 81, 115
BcoDI GTCTC 2 cut(s) 70, 582
BfmI CTRYAG 1 cut(s) 121
BfuAI ACCTGC 1 cut(s) 193
BglII AGATCT 1 cut(s) 111
BisI GCNGC 2 cut(s) 82, 103
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 2 cut(s) 83, 104
Bme18I GGWCC 1 cut(s) 768
BmgBI CACGTC 1 cut(s) 371
BmgT120I GGNCC 1 cut(s) 768
BmsI GCATC 3 cut(s) 525, 549, 628
BoxI GACNNNNGTC 1 cut(s) 605
BpmI CTGGAG 1 cut(s) 646
Bpu1102I GCTNAGC 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse1I ACTGG 2 cut(s) 463, 629
Bse3DI GCAATG 4 cut(s) 127, 334, 346, 706
BseGI GGATG 3 cut(s) 199, 564, 643
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMI GCAATG 4 cut(s) 127, 334, 346, 706
BseMII CTCAG 3 cut(s) 146, 219, 257
BseNI ACTGG 2 cut(s) 463, 629
BseSI GKGCMC 2 cut(s) 470, 531
BseXI GCAGC 2 cut(s) 68, 89
BsgI GTGCAG 1 cut(s) 287
Bsh1236I CGCG 2 cut(s) 53, 426
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 20
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 682
BsmAI GTCTC 2 cut(s) 70, 582
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 1 cut(s) 570
Bsp1286I GDGCHC 4 cut(s) 97, 215, 470, 531
Bsp143I GATC 6 cut(s) 106, 111, 169, 401, 418, 645
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 4 cut(s) 261, 348, 426, 771
BspCNI CTCAG 3 cut(s) 147, 220, 256
BspFNI CGCG 2 cut(s) 53, 426
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 3 cut(s) 177, 409, 426
BspQI GCTCTTC 1 cut(s) 452
BsrDI GCAATG 4 cut(s) 127, 334, 346, 706
BsrI ACTGG 2 cut(s) 463, 629
BssMI GATC 6 cut(s) 106, 111, 169, 401, 418, 645
Bst4CI ACNGT 1 cut(s) 524
Bst6I CTCTTC 2 cut(s) 452, 663
BstAPI GCANNNNNTGC 2 cut(s) 345, 535
BstDEI CTNAG 3 cut(s) 155, 228, 243
BstENI CCTNNNNNAGG 1 cut(s) 680
BstF5I GGATG 3 cut(s) 199, 564, 643
BstFNI CGCG 2 cut(s) 53, 426
BstHHI GCGC 3 cut(s) 25, 55, 254
BstKTI GATC 6 cut(s) 109, 114, 172, 404, 421, 648
BstMAI GTCTC 2 cut(s) 70, 582
BstMBI GATC 6 cut(s) 106, 111, 169, 401, 418, 645
BstMWI GCNNNNNNNGC 6 cut(s) 219, 258, 294, 345, 535, 647
BstPAI GACNNNNGTC 1 cut(s) 605
BstSFI CTRYAG 1 cut(s) 121
BstSLI GKGCMC 2 cut(s) 470, 531
BstUI CGCG 2 cut(s) 53, 426
BstV1I GCAGC 2 cut(s) 68, 89
BstX2I RGATCY 3 cut(s) 111, 401, 418
BstXI CCANNNNNNTGG 1 cut(s) 604
BstYI RGATCY 3 cut(s) 111, 401, 418
BtrI CACGTC 1 cut(s) 371
BtsCI GGATG 3 cut(s) 199, 564, 643
BtsIMutI CAGTG 2 cut(s) 225, 470
BveI ACCTGC 1 cut(s) 193
CfoI GCGC 3 cut(s) 25, 55, 254
Cfr13I GGNCC 1 cut(s) 768
CseI GACGC 1 cut(s) 87
Csp6I GTAC 1 cut(s) 673
CspCI CAANNNNNGTGG 2 cut(s) 598, 633
CviAII CATG 5 cut(s) 176, 319, 454, 613, 661
CviJI RGCY 7 cut(s) 31, 95, 120, 143, 150, 247, 462
CviKI_1 RGCY 7 cut(s) 31, 95, 120, 143, 150, 247, 462
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 3 cut(s) 155, 228, 243
DpnI GATC 6 cut(s) 108, 113, 171, 403, 420, 647
DpnII GATC 6 cut(s) 106, 111, 169, 401, 418, 645
Eam1104I CTCTTC 2 cut(s) 452, 663
EarI CTCTTC 2 cut(s) 452, 663
Eco24I GRGCYC 1 cut(s) 97
Eco32I GATATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 768
Eco57I CTGAAG 1 cut(s) 687
EcoNI CCTNNNNNAGG 1 cut(s) 680
EcoRV GATATC 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 97
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 5 cut(s) 179, 322, 457, 616, 664
FaqI GGGAC 1 cut(s) 570
FatI CATG 5 cut(s) 175, 318, 453, 612, 660
FauNDI CATATG 1 cut(s) 540
FblI GTMKAC 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 82, 103
FokI GGATG 3 cut(s) 206, 571, 650
FriOI GRGCYC 1 cut(s) 97
Fsp4HI GCNGC 2 cut(s) 82, 103
FspI TGCGCA 1 cut(s) 253
GlaI GCGC 3 cut(s) 24, 54, 253
GluI GCNGC 2 cut(s) 82, 103
GsuI CTGGAG 1 cut(s) 646
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 87
HhaI GCGC 3 cut(s) 25, 55, 254
Hin1II CATG 5 cut(s) 179, 322, 457, 616, 664
Hin6I GCGC 3 cut(s) 23, 53, 252
HinP1I GCGC 3 cut(s) 23, 53, 252
HincII GTYRAC 2 cut(s) 610, 718
HindII GTYRAC 2 cut(s) 610, 718
HinfI GANTC 7 cut(s) 14, 88, 360, 494, 571, 628, 760
HpaII CCGG 1 cut(s) 20
HphI GGTGA 1 cut(s) 774
Hpy166II GTNNAC 4 cut(s) 125, 368, 610, 718
Hpy188I TCNGA 7 cut(s) 13, 75, 111, 156, 165, 393, 765
Hpy8I GTNNAC 4 cut(s) 125, 368, 610, 718
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 1 cut(s) 370
HpyCH4V TGCA 8 cut(s) 84, 268, 297, 339, 538, 562, 641, 699
HpyF10VI GCNNNNNNNGC 6 cut(s) 219, 258, 294, 345, 535, 647
HpyF3I CTNAG 3 cut(s) 155, 228, 243
HpySE526I ACGT 1 cut(s) 370
Hsp92II CATG 5 cut(s) 179, 322, 457, 616, 664
HspAI GCGC 3 cut(s) 23, 53, 252
Kzo9I GATC 6 cut(s) 106, 111, 169, 401, 418, 645
LguI GCTCTTC 1 cut(s) 452
LmnI GCTCC 2 cut(s) 218, 599
LpnPI CCDG 9 cut(s) 33, 160, 176, 188, 476, 483, 610, 678, 689
Lsp1109I GCAGC 2 cut(s) 68, 89
LweI GCATC 3 cut(s) 525, 549, 628
MaeII ACGT 1 cut(s) 370
MaeIII GTNAC 7 cut(s) 62, 371, 476, 564, 620, 685, 751
MalI GATC 6 cut(s) 108, 113, 171, 403, 420, 647
MboI GATC 6 cut(s) 106, 111, 169, 401, 418, 645
MboII GAAGA 3 cut(s) 106, 469, 680
MfeI CAATTG 2 cut(s) 436, 731
MflI RGATCY 3 cut(s) 111, 401, 418
MhlI GDGCHC 4 cut(s) 97, 215, 470, 531
MluCI AATT 8 cut(s) 37, 329, 351, 376, 436, 448, 731, 787
MlyI GAGTC 4 cut(s) 8, 369, 488, 637
MmeI TCCRAC 2 cut(s) 36, 615
MnlI CCTC 5 cut(s) 180, 229, 676, 704, 759
Mph1103I ATGCAT 1 cut(s) 540
MroXI GAANNNNTTC 1 cut(s) 330
MseI TTAA 1 cut(s) 501
MslI CAYNNNNRTG 3 cut(s) 60, 339, 557
MspI CCGG 1 cut(s) 20
MunI CAATTG 2 cut(s) 436, 731
MvnI CGCG 2 cut(s) 53, 426
MwoI GCNNNNNNNGC 6 cut(s) 219, 258, 294, 345, 535, 647
NdeI CATATG 1 cut(s) 540
NdeII GATC 6 cut(s) 106, 111, 169, 401, 418, 645
NlaIII CATG 5 cut(s) 179, 322, 457, 616, 664
NmuCI GTSAC 3 cut(s) 62, 371, 564
NsbI TGCGCA 1 cut(s) 253
NsiI ATGCAT 1 cut(s) 540
OliI CACNNNNGTG 1 cut(s) 60
PaqCI CACCTGC 1 cut(s) 193
PciSI GCTCTTC 1 cut(s) 452
PdmI GAANNNNTTC 1 cut(s) 330
PfeI GAWTC 3 cut(s) 88, 571, 760
PkrI GCNGC 2 cut(s) 83, 104
PleI GAGTC 4 cut(s) 8, 368, 488, 636
PpsI GAGTC 4 cut(s) 8, 368, 488, 636
PshAI GACNNNNGTC 1 cut(s) 605
PspPI GGNCC 1 cut(s) 768
PsuI RGATCY 3 cut(s) 111, 401, 418
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 3 cut(s) 60, 339, 557
SapI GCTCTTC 1 cut(s) 452
SaqAI TTAA 1 cut(s) 501
SatI GCNGC 2 cut(s) 82, 103
Sau3AI GATC 6 cut(s) 106, 111, 169, 401, 418, 645
Sau96I GGNCC 1 cut(s) 768
SchI GAGTC 4 cut(s) 8, 369, 488, 637
SduI GDGCHC 4 cut(s) 97, 215, 470, 531
SetI ASST 7 cut(s) 152, 207, 240, 249, 373, 678, 687
SfaNI GCATC 3 cut(s) 525, 549, 628
SfcI CTRYAG 1 cut(s) 121
SinI GGWCC 1 cut(s) 768
SmiMI CAYNNNNRTG 3 cut(s) 60, 339, 557
Sse9I AATT 8 cut(s) 37, 329, 351, 376, 436, 448, 731, 787
SsiI CCGC 4 cut(s) 261, 348, 426, 771
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 1 cut(s) 373
TaqI TCGA 1 cut(s) 91
TasI AATT 8 cut(s) 37, 329, 351, 376, 436, 448, 731, 787
TfiI GAWTC 3 cut(s) 88, 571, 760
Tru1I TTAA 1 cut(s) 501
Tru9I TTAA 1 cut(s) 501
TscAI CASTG 2 cut(s) 232, 470
TseFI GTSAC 3 cut(s) 62, 371, 564
TseI GCWGC 2 cut(s) 81, 102
Tsp45I GTSAC 3 cut(s) 62, 371, 564
TspDTI ATGAA 5 cut(s) 323, 335, 470, 533, 541
TspRI CASTG 2 cut(s) 232, 470
VpaK11BI GGWCC 1 cut(s) 768
XagI CCTNNNNNAGG 1 cut(s) 680
XapI RAATTY 3 cut(s) 37, 351, 448
XmiI GTMKAC 1 cut(s) 124
XmnI GAANNNNTTC 1 cut(s) 330
Zsp2I ATGCAT 1 cut(s) 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.