Rh6BG350600

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0013924
Physical Location & Seq
Reverse (-)
58138221 .. 58141045
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG350600.1

Sequence Viewer

Length: 963 bp
ATGGGCCCCGCAAAGATTAGGAAATATAAAAGGTGCCGGCTACCTGATTTTGATATTACACACCCTATTTCCGTCGTAGTGGAGAGTCAGAGAATTTGTATCAGACTGTCTCTCTCAGACTCCGCCCATTTTGAGCTATTTCCGGCGATGGAAAGCTCCGGCTCTCCGGCGCCTCGGACTCAAAAGCCACGCGATTTCGGAAAGTCCGAGTACGGGTGCAACCATTATCGGAGACGGTGCAGGATTCGAGCCCCTTGCTGCGATCAGATCTTCCCCTGTAGGCATTGCCACAACGAAGCCGCCAGCTCTCTGAGCAACCCGAAGGATCGCCATGAAATTGTGAGACAGGATGTGAAGCAAGTTGTGTGCTCCATTTGCGATACCGAGCAAGAGGTTGCTCAGCTTTGTGCAAACTGTGGTGTTAGCATGGGAGAGTATTTCTGCGACATTTGCAAGTTCTTTGATGATGATACCAACAAAGGGCAATTTCATTGCAACGAGTGCGGAATTTGTAGAGTTGGTGGTCGCGACAACTTCTTCCATTGTCAGAAGTGTGGGTCTTGCTATGGAGTGGATCTACGCGATAATCACTTATGTGTAGAAAATTCCATGAAGAACCACTGCCCTGTCTGTTATGAGTATCTCTTTGACTCGGTTAAAGGCACATCGATAATGAACTGTGGGCACACAATGCATACGGATTGCTTTATTGAGATGCACTCACAGAATCAGTATCGTTGCCCCCTTTGCTCCAAGACATTGCTCAACATGACTCGTTTCTGGAATATGTTGGATGAGGAGATTGCAGCTACTCCCATGCCTGAGGAGTACCAGTACGAGGTTACTATCCTCTGCAATGACTGTGTCAAAACATGCAATGTGTCTTTTCACATTCTTGGGCTCAAGTGCACCAATTGCAGTTCATATAACACCCGCAGAATTTCAGGTGGTGTTCAATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0000731 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006281 GO:0006301 GO:0006464 GO:0006508 GO:0006511 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0018130 GO:0019222 GO:0019438 GO:0019538 GO:0019787 GO:0019941 GO:0019985 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045732 GO:0045862 GO:0046483 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051716 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0070987 GO:0071704 GO:0071897 GO:0080090 GO:0090304 GO:0140096 GO:1901360 GO:1901362 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-C3HC4_2 zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

320

Amino Acids

36.63

Weight (kDa)

7.11

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 73 - 146 5.5e-20 CHY zinc finger
zf-RING_2 PF13639 207 - 250 6.9e-07 Ring finger domain
zf-C3HC4 PF00097 208 - 250 2.6e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 208 - 250 3.5e-06 Zinc finger, C3HC4 type (RING finger)
zinc_ribbon_6 PF14599 255 - 312 1.4e-25 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013924)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G62970 AT3G62970 AT3G62970
fragaria_vesca FvH4_2g24920
malus_domestica MD03G1277700.v1.1
prunus_persica Prupe.8G254000_v2.0.a1
pyrus_communis pycom03g22110
rosa_chinensis RchiOBHm_Chr6g0292841
rosa_laevigata RLG00000011988
rosa_multiflora Rmu_sc0000639.1_g000021
rosa_roxburghii Rroxscaffold_7G00174660
rosa_rugosa Rorug06G0230100
rosa_samantha Rh6AG343400 Rh6BG350600 Rh6CG357600 Rh6DG343500
rosa_wichuraiana Rw6G029950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 33, 169
AccII CGCG 3 cut(s) 192, 528, 582
AciI CCGC 5 cut(s) 9, 123, 300, 504, 934
AclWI GGATC 2 cut(s) 333, 582
AcsI RAATTY 4 cut(s) 93, 507, 604, 939
AcyI GRCGYC 1 cut(s) 170
AfaI GTAC 3 cut(s) 212, 830, 836
AfiI CCNNNNNNNGG 3 cut(s) 213, 480, 838
AgsI TTSAA 1 cut(s) 956
AleI CACNNNNGTG 1 cut(s) 594
AluBI AGCT 5 cut(s) 136, 156, 306, 403, 809
AluI AGCT 5 cut(s) 136, 156, 306, 403, 809
Alw21I GWGCWC 2 cut(s) 371, 911
Alw26I GTCTC 3 cut(s) 114, 226, 337
Alw44I GTGCAC 1 cut(s) 907
AlwI GGATC 2 cut(s) 333, 582
AoxI GGCC 1 cut(s) 4
ApaI GGGCCC 1 cut(s) 8
ApaLI GTGCAC 1 cut(s) 907
ApeKI GCWGC 2 cut(s) 258, 806
ApoI RAATTY 4 cut(s) 93, 507, 604, 939
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 4, 5
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 3 cut(s) 8, 687, 911
BanI GGYRCC 2 cut(s) 33, 169
BanII GRGCYC 3 cut(s) 8, 253, 903
Bbv12I GWGCWC 2 cut(s) 371, 911
BbvI GCAGC 2 cut(s) 245, 818
BccI CCATC 1 cut(s) 142
BcgI CGANNNNNNTGC 2 cut(s) 237, 271
BcoDI GTCTC 3 cut(s) 114, 226, 337
BfmI CTRYAG 1 cut(s) 277
BfoI RGCGCY 1 cut(s) 173
BglII AGATCT 1 cut(s) 267
BisI GCNGC 3 cut(s) 259, 300, 807
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 3 cut(s) 260, 301, 808
BmgT120I GGNCC 2 cut(s) 4, 5
BmiI GGNNCC 4 cut(s) 6, 7, 35, 171
BmsI GCATC 1 cut(s) 705
BplI GAGNNNNNCTC 2 cut(s) 704, 736
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 887
Bsa29I ATCGAT 1 cut(s) 668
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 173
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 3 cut(s) 213, 480, 838
Bse118I RCCGGY 1 cut(s) 36
Bse1I ACTGG 1 cut(s) 832
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 5 cut(s) 283, 490, 758, 862, 883
BseCI ATCGAT 1 cut(s) 668
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 355, 799
BseLI CCNNNNNNNGG 3 cut(s) 213, 480, 838
BseMI GCAATG 5 cut(s) 283, 490, 758, 862, 883
BseMII CTCAG 4 cut(s) 129, 302, 413, 813
BseNI ACTGG 1 cut(s) 832
BseRI GAGGAG 2 cut(s) 812, 839
BseSI GKGCMC 3 cut(s) 8, 687, 911
BseXI GCAGC 2 cut(s) 245, 818
BsgI GTGCAG 1 cut(s) 259
Bsh1236I CGCG 3 cut(s) 192, 528, 582
BshFI GGCC 1 cut(s) 6
BshNI GGYRCC 2 cut(s) 33, 169
BshVI ATCGAT 1 cut(s) 668
BsiHKAI GWGCWC 2 cut(s) 371, 911
BsiSI CCGG 4 cut(s) 37, 143, 159, 167
BslI CCNNNNNNNGG 3 cut(s) 213, 480, 838
BsmAI GTCTC 3 cut(s) 114, 226, 337
BsmBI CGTCTC 1 cut(s) 226
BsnI GGCC 1 cut(s) 6
Bsp120I GGGCCC 1 cut(s) 4
Bsp1286I GDGCHC 6 cut(s) 8, 253, 371, 687, 903, 911
Bsp143I GATC 4 cut(s) 262, 267, 325, 574
Bsp1720I GCTNAGC 1 cut(s) 399
Bsp68I TCGCGA 1 cut(s) 528
BspACI CCGC 5 cut(s) 9, 123, 300, 504, 934
BspANI GGCC 1 cut(s) 6
BspCNI CTCAG 4 cut(s) 128, 303, 412, 814
BspDI ATCGAT 1 cut(s) 668
BspFNI CGCG 3 cut(s) 192, 528, 582
BspLI GGNNCC 4 cut(s) 6, 7, 35, 171
BspPI GGATC 2 cut(s) 333, 582
BspT107I GGYRCC 2 cut(s) 33, 169
BsrDI GCAATG 5 cut(s) 283, 490, 758, 862, 883
BsrFI RCCGGY 1 cut(s) 36
BsrI ACTGG 1 cut(s) 832
BssAI RCCGGY 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 173
BssMI GATC 4 cut(s) 262, 267, 325, 574
BssNI GRCGYC 1 cut(s) 170
Bst4CI ACNGT 5 cut(s) 108, 237, 416, 680, 863
BstACI GRCGYC 1 cut(s) 170
BstAPI GCANNNNNTGC 3 cut(s) 501, 691, 915
BstC8I GCNNGC 2 cut(s) 38, 304
BstDEI CTNAG 4 cut(s) 115, 311, 399, 822
BstF5I GGATG 2 cut(s) 355, 799
BstFNI CGCG 3 cut(s) 192, 528, 582
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 4 cut(s) 265, 270, 328, 577
BstMAI GTCTC 3 cut(s) 114, 226, 337
BstMBI GATC 4 cut(s) 262, 267, 325, 574
BstMWI GCNNNNNNNGC 7 cut(s) 312, 375, 450, 501, 691, 747, 915
BstNSI RCATGY 1 cut(s) 876
BstSFI CTRYAG 1 cut(s) 277
BstSLI GKGCMC 3 cut(s) 8, 687, 911
BstUI CGCG 3 cut(s) 192, 528, 582
BstV1I GCAGC 2 cut(s) 245, 818
BstX2I RGATCY 2 cut(s) 267, 574
BstYI RGATCY 2 cut(s) 267, 574
Bsu15I ATCGAT 1 cut(s) 668
Bsu36I CCTNAGG 1 cut(s) 822
BsuRI GGCC 1 cut(s) 6
BsuTUI ATCGAT 1 cut(s) 668
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 2 cut(s) 355, 799
BtsI GCAGTG 1 cut(s) 619
BtsIMutI CAGTG 1 cut(s) 619
BtuMI TCGCGA 1 cut(s) 528
Cac8I GCNNGC 2 cut(s) 38, 304
CfoI GCGC 1 cut(s) 172
Cfr10I RCCGGY 1 cut(s) 36
Cfr13I GGNCC 2 cut(s) 4, 5
ClaI ATCGAT 1 cut(s) 668
Csp6I GTAC 3 cut(s) 211, 829, 835
CviAII CATG 6 cut(s) 332, 427, 610, 769, 817, 873
CviQI GTAC 3 cut(s) 211, 829, 835
DdeI CTNAG 4 cut(s) 115, 311, 399, 822
DinI GGCGCC 1 cut(s) 171
DpnI GATC 4 cut(s) 264, 269, 327, 576
DpnII GATC 4 cut(s) 262, 267, 325, 574
EciI GGCGGA 1 cut(s) 112
Eco24I GRGCYC 3 cut(s) 8, 253, 903
Eco81I CCTNAGG 1 cut(s) 822
EcoO109I RGGNCCY 1 cut(s) 5
EcoT22I ATGCAT 1 cut(s) 696
EcoT38I GRGCYC 3 cut(s) 8, 253, 903
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
Esp3I CGTCTC 1 cut(s) 226
FaeI CATG 6 cut(s) 335, 430, 613, 772, 820, 876
FatI CATG 6 cut(s) 331, 426, 609, 768, 816, 872
FauI CCCGC 2 cut(s) 16, 941
Fnu4HI GCNGC 3 cut(s) 259, 300, 807
FokI GGATG 2 cut(s) 362, 806
FriOI GRGCYC 3 cut(s) 8, 253, 903
Fsp4HI GCNGC 3 cut(s) 259, 300, 807
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 259, 300, 807
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 1 cut(s) 6
HapII CCGG 4 cut(s) 37, 143, 159, 167
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 6 cut(s) 335, 430, 613, 772, 820, 876
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 7 cut(s) 85, 119, 178, 244, 650, 727, 772
HpaII CCGG 4 cut(s) 37, 143, 159, 167
Hpy166II GTNNAC 1 cut(s) 909
Hpy188III TCNNGA 2 cut(s) 527, 781
Hpy8I GTNNAC 1 cut(s) 909
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 316
HpyCH4III ACNGT 5 cut(s) 108, 237, 416, 680, 863
HpyF10VI GCNNNNNNNGC 7 cut(s) 312, 375, 450, 501, 691, 747, 915
HpyF3I CTNAG 4 cut(s) 115, 311, 399, 822
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 6 cut(s) 335, 430, 613, 772, 820, 876
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
Kzo9I GATC 4 cut(s) 262, 267, 325, 574
LmnI GCTCC 3 cut(s) 161, 374, 755
Lsp1109I GCAGC 2 cut(s) 245, 818
LweI GCATC 1 cut(s) 705
MaeIII GTNAC 1 cut(s) 841
MalI GATC 4 cut(s) 264, 269, 327, 576
MboI GATC 4 cut(s) 262, 267, 325, 574
MboII GAAGA 3 cut(s) 262, 529, 625
MfeI CAATTG 1 cut(s) 913
MflI RGATCY 2 cut(s) 267, 574
MhlI GDGCHC 6 cut(s) 8, 253, 371, 687, 903, 911
MluCI AATT 7 cut(s) 93, 336, 485, 507, 604, 913, 939
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 5 cut(s) 94, 113, 172, 644, 766
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 6 cut(s) 183, 385, 790, 817, 832, 860
Mph1103I ATGCAT 1 cut(s) 696
MroNI GCCGGC 1 cut(s) 36
MseI TTAA 1 cut(s) 657
MslI CAYNNNNRTG 1 cut(s) 594
MspI CCGG 4 cut(s) 37, 143, 159, 167
MunI CAATTG 1 cut(s) 913
MvnI CGCG 3 cut(s) 192, 528, 582
MwoI GCNNNNNNNGC 7 cut(s) 312, 375, 450, 501, 691, 747, 915
NaeI GCCGGC 1 cut(s) 38
NarI GGCGCC 1 cut(s) 170
NdeII GATC 4 cut(s) 262, 267, 325, 574
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 6 cut(s) 335, 430, 613, 772, 820, 876
NlaIV GGNNCC 4 cut(s) 6, 7, 35, 171
NruI TCGCGA 1 cut(s) 528
NsiI ATGCAT 1 cut(s) 696
NspI RCATGY 1 cut(s) 876
OliI CACNNNNGTG 1 cut(s) 594
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PdiI GCCGGC 1 cut(s) 38
PfeI GAWTC 2 cut(s) 244, 727
PflFI GACNNNGTC 1 cut(s) 863
PkrI GCNGC 3 cut(s) 260, 301, 808
PleI GAGTC 5 cut(s) 93, 113, 172, 644, 766
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 5 cut(s) 93, 113, 172, 644, 766
PspN4I GGNNCC 4 cut(s) 6, 7, 35, 171
PspOMI GGGCCC 1 cut(s) 4
PspPI GGNCC 2 cut(s) 4, 5
PsuI RGATCY 2 cut(s) 267, 574
PsyI GACNNNGTC 1 cut(s) 863
RruI TCGCGA 1 cut(s) 528
RsaI GTAC 3 cut(s) 212, 830, 836
RsaNI GTAC 3 cut(s) 211, 829, 835
RseI CAYNNNNRTG 1 cut(s) 594
SaqAI TTAA 1 cut(s) 657
SatI GCNGC 3 cut(s) 259, 300, 807
Sau3AI GATC 4 cut(s) 262, 267, 325, 574
Sau96I GGNCC 2 cut(s) 4, 5
SchI GAGTC 5 cut(s) 94, 113, 172, 644, 766
SduI GDGCHC 6 cut(s) 8, 253, 371, 687, 903, 911
SfaNI GCATC 1 cut(s) 705
SfcI CTRYAG 1 cut(s) 277
SfoI GGCGCC 1 cut(s) 171
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 1 cut(s) 902
SmoI CTYRAG 1 cut(s) 902
Sse9I AATT 7 cut(s) 93, 336, 485, 507, 604, 913, 939
SsiI CCGC 5 cut(s) 9, 123, 300, 504, 934
SspDI GGCGCC 1 cut(s) 169
SspI AATATT 1 cut(s) 959
TaaI ACNGT 5 cut(s) 108, 237, 416, 680, 863
TaqI TCGA 2 cut(s) 247, 668
TasI AATT 7 cut(s) 93, 336, 485, 507, 604, 913, 939
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 244, 727
Tru1I TTAA 1 cut(s) 657
Tru9I TTAA 1 cut(s) 657
TscAI CASTG 1 cut(s) 626
TseI GCWGC 2 cut(s) 258, 806
TspDTI ATGAA 5 cut(s) 348, 479, 626, 689, 912
TspGWI ACGGA 2 cut(s) 61, 713
TspRI CASTG 1 cut(s) 626
Tth111I GACNNNGTC 1 cut(s) 863
VneI GTGCAC 1 cut(s) 907
XapI RAATTY 4 cut(s) 93, 507, 604, 939
XceI RCATGY 1 cut(s) 876
Zsp2I ATGCAT 1 cut(s) 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.