methyl-CpG-binding domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G63030 |
| fragaria_vesca | FvH4_2g24220 |
| malus_domestica | MD03G1271900.v1.1 MD11G1292500.v1.1 |
| prunus_persica | Prupe.8G248100_v2.0.a1 |
| pyrus_communis | pycom03g21650 pycom11g25890 |
| rosa_chinensis | RchiOBHm_Chr6g0292001 |
| rosa_laevigata | RLG00000012071 |
| rosa_multiflora | Rmu_sc0008666.1_g000005 |
| rosa_roxburghii | Rroxscaffold_7G00175500 Rroxscaffold_7G00178020 |
| rosa_rugosa | Rorug06G0222400 |
| rosa_samantha | Rh6AG336200 Rh6BG343600 Rh6CG349800 Rh6DG336600 |
| rosa_wichuraiana | Rw6G029270 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 406 |
| AclWI | GGATC | 3 cut(s) | 164, 177, 476 |
| AcsI | RAATTY | 1 cut(s) | 410 |
| AcuI | CTGAAG | 1 cut(s) | 510 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 491 |
| AgsI | TTSAA | 3 cut(s) | 292, 398, 439 |
| AjnI | CCWGG | 3 cut(s) | 61, 129, 262 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 395, 427 |
| AluBI | AGCT | 3 cut(s) | 300, 364, 490 |
| AluI | AGCT | 3 cut(s) | 300, 364, 490 |
| Alw26I | GTCTC | 2 cut(s) | 272, 426 |
| AlwI | GGATC | 3 cut(s) | 164, 177, 476 |
| Ama87I | CYCGRG | 1 cut(s) | 164 |
| Aor13HI | TCCGGA | 1 cut(s) | 406 |
| ApeKI | GCWGC | 2 cut(s) | 86, 386 |
| ApoI | RAATTY | 1 cut(s) | 410 |
| AsuC2I | CCSGG | 1 cut(s) | 355 |
| AsuHPI | GGTGA | 1 cut(s) | 130 |
| AvaI | CYCGRG | 1 cut(s) | 164 |
| BamHI | GGATCC | 1 cut(s) | 169 |
| BbvI | GCAGC | 2 cut(s) | 73, 373 |
| BccI | CCATC | 1 cut(s) | 322 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 364, 398 |
| BciT130I | CCWGG | 3 cut(s) | 63, 131, 264 |
| BciVI | GTATCC | 1 cut(s) | 325 |
| BcnI | CCSGG | 1 cut(s) | 355 |
| BcoDI | GTCTC | 2 cut(s) | 272, 426 |
| BfuI | GTATCC | 1 cut(s) | 325 |
| BisI | GCNGC | 2 cut(s) | 87, 387 |
| BlsI | GCNGC | 2 cut(s) | 88, 388 |
| Bme1390I | CCNGG | 4 cut(s) | 63, 131, 264, 355 |
| BmeT110I | CYCGRG | 1 cut(s) | 164 |
| BmiI | GGNNCC | 1 cut(s) | 171 |
| BmrFI | CCNGG | 4 cut(s) | 63, 131, 264, 355 |
| BoxI | GACNNNNGTC | 1 cut(s) | 248 |
| Bpu10I | CCTNAGC | 1 cut(s) | 365 |
| BpuMI | CCSGG | 1 cut(s) | 355 |
| BsaI | GGTCTC | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 2 cut(s) | 62, 453 |
| BsaWI | WCCGGW | 1 cut(s) | 406 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 491 |
| Bse3DI | GCAATG | 1 cut(s) | 382 |
| BseAI | TCCGGA | 1 cut(s) | 406 |
| BseBI | CCWGG | 3 cut(s) | 63, 131, 264 |
| BseDI | CCNNGG | 2 cut(s) | 62, 453 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BseMI | GCAATG | 1 cut(s) | 382 |
| BseMII | CTCAG | 2 cut(s) | 322, 379 |
| BseRI | GAGGAG | 2 cut(s) | 26, 29 |
| BseXI | GCAGC | 2 cut(s) | 73, 373 |
| BsgI | GTGCAG | 1 cut(s) | 72 |
| BsiHKCI | CYCGRG | 1 cut(s) | 164 |
| BsiSI | CCGG | 2 cut(s) | 354, 407 |
| BslFI | GGGAC | 1 cut(s) | 434 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 491 |
| BsmAI | GTCTC | 2 cut(s) | 272, 426 |
| BsmFI | GGGAC | 1 cut(s) | 434 |
| Bso31I | GGTCTC | 1 cut(s) | 272 |
| BsoBI | CYCGRG | 1 cut(s) | 164 |
| Bsp13I | TCCGGA | 1 cut(s) | 406 |
| Bsp143I | GATC | 3 cut(s) | 18, 169, 481 |
| BspCNI | CTCAG | 2 cut(s) | 321, 378 |
| BspEI | TCCGGA | 1 cut(s) | 406 |
| BspLI | GGNNCC | 1 cut(s) | 171 |
| BspPI | GGATC | 3 cut(s) | 164, 177, 476 |
| BspQI | GCTCTTC | 2 cut(s) | 204, 527 |
| BspTNI | GGTCTC | 1 cut(s) | 272 |
| BsrDI | GCAATG | 1 cut(s) | 382 |
| BssECI | CCNNGG | 2 cut(s) | 62, 453 |
| BssMI | GATC | 3 cut(s) | 18, 169, 481 |
| BssT1I | CCWWGG | 1 cut(s) | 453 |
| Bst2UI | CCWGG | 3 cut(s) | 63, 131, 264 |
| Bst4CI | ACNGT | 5 cut(s) | 93, 104, 182, 448, 472 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 204, 527 |
| BstC8I | GCNNGC | 1 cut(s) | 216 |
| BstDEI | CTNAG | 4 cut(s) | 301, 308, 324, 365 |
| BstKTI | GATC | 3 cut(s) | 21, 172, 484 |
| BstMAI | GTCTC | 2 cut(s) | 272, 426 |
| BstMBI | GATC | 3 cut(s) | 18, 169, 481 |
| BstNI | CCWGG | 3 cut(s) | 63, 131, 264 |
| BstNSI | RCATGY | 1 cut(s) | 202 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 248 |
| BstSCI | CCNGG | 4 cut(s) | 61, 129, 262, 353 |
| BstV1I | GCAGC | 2 cut(s) | 73, 373 |
| BstX2I | RGATCY | 1 cut(s) | 169 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 460 |
| BstYI | RGATCY | 1 cut(s) | 169 |
| BsuI | GTATCC | 1 cut(s) | 325 |
| BtsI | GCAGTG | 1 cut(s) | 544 |
| BtsIMutI | CAGTG | 3 cut(s) | 98, 444, 544 |
| Cac8I | GCNNGC | 1 cut(s) | 216 |
| CviAII | CATG | 2 cut(s) | 199, 460 |
| DdeI | CTNAG | 4 cut(s) | 301, 308, 324, 365 |
| DpnI | GATC | 3 cut(s) | 20, 171, 483 |
| DpnII | GATC | 3 cut(s) | 18, 169, 481 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 204, 527 |
| EarI | CTCTTC | 3 cut(s) | 3, 204, 527 |
| Eco130I | CCWWGG | 1 cut(s) | 453 |
| Eco31I | GGTCTC | 1 cut(s) | 272 |
| Eco32I | GATATC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 1 cut(s) | 510 |
| Eco88I | CYCGRG | 1 cut(s) | 164 |
| EcoRI | GAATTC | 1 cut(s) | 410 |
| EcoRII | CCWGG | 3 cut(s) | 61, 129, 262 |
| EcoRV | GATATC | 1 cut(s) | 148 |
| EcoT14I | CCWWGG | 1 cut(s) | 453 |
| ErhI | CCWWGG | 1 cut(s) | 453 |
| FaeI | CATG | 2 cut(s) | 202, 463 |
| FaiI | YATR | 5 cut(s) | 84, 141, 200, 461, 555 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 284, 316 |
| FaqI | GGGAC | 1 cut(s) | 434 |
| FatI | CATG | 2 cut(s) | 198, 459 |
| Fnu4HI | GCNGC | 2 cut(s) | 87, 387 |
| Fsp4HI | GCNGC | 2 cut(s) | 87, 387 |
| GluI | GCNGC | 2 cut(s) | 87, 387 |
| HapII | CCGG | 2 cut(s) | 354, 407 |
| Hin1II | CATG | 2 cut(s) | 202, 463 |
| HindIII | AAGCTT | 2 cut(s) | 298, 488 |
| HinfI | GANTC | 2 cut(s) | 233, 370 |
| HpaII | CCGG | 2 cut(s) | 354, 407 |
| HphI | GGTGA | 1 cut(s) | 130 |
| Hpy188I | TCNGA | 7 cut(s) | 23, 152, 186, 243, 311, 486, 529 |
| Hpy188III | TCNNGA | 4 cut(s) | 292, 367, 407, 415 |
| HpyAV | CCTTC | 1 cut(s) | 400 |
| HpyCH4III | ACNGT | 5 cut(s) | 93, 104, 182, 448, 472 |
| HpyCH4V | TGCA | 1 cut(s) | 89 |
| HpyF3I | CTNAG | 4 cut(s) | 301, 308, 324, 365 |
| Hsp92II | CATG | 2 cut(s) | 202, 463 |
| Kpn2I | TCCGGA | 1 cut(s) | 406 |
| Kzo9I | GATC | 3 cut(s) | 18, 169, 481 |
| LguI | GCTCTTC | 2 cut(s) | 204, 527 |
| LmnI | GCTCC | 1 cut(s) | 64 |
| Lsp1109I | GCAGC | 2 cut(s) | 73, 373 |
| MaeIII | GTNAC | 1 cut(s) | 104 |
| MalI | GATC | 3 cut(s) | 20, 171, 483 |
| MboI | GATC | 3 cut(s) | 18, 169, 481 |
| MboII | GAAGA | 8 cut(s) | 20, 155, 199, 221, 228, 370, 476, 544 |
| MflI | RGATCY | 1 cut(s) | 169 |
| MluCI | AATT | 2 cut(s) | 410, 439 |
| MlyI | GAGTC | 1 cut(s) | 379 |
| MnlI | CCTC | 6 cut(s) | 4, 7, 60, 108, 127, 160 |
| MroI | TCCGGA | 1 cut(s) | 406 |
| MseI | TTAA | 1 cut(s) | 177 |
| MspI | CCGG | 2 cut(s) | 354, 407 |
| MspR9I | CCNGG | 4 cut(s) | 63, 131, 264, 355 |
| MvaI | CCWGG | 3 cut(s) | 63, 131, 264 |
| NciI | CCSGG | 1 cut(s) | 355 |
| NdeII | GATC | 3 cut(s) | 18, 169, 481 |
| NlaIII | CATG | 2 cut(s) | 202, 463 |
| NlaIV | GGNNCC | 1 cut(s) | 171 |
| NmuCI | GTSAC | 1 cut(s) | 104 |
| NspI | RCATGY | 1 cut(s) | 202 |
| PaeR7I | CTCGAG | 1 cut(s) | 164 |
| PciSI | GCTCTTC | 2 cut(s) | 204, 527 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 390 |
| PfeI | GAWTC | 1 cut(s) | 233 |
| PkrI | GCNGC | 2 cut(s) | 88, 388 |
| PleI | GAGTC | 1 cut(s) | 378 |
| PpsI | GAGTC | 1 cut(s) | 378 |
| PshAI | GACNNNNGTC | 1 cut(s) | 248 |
| Psp6I | CCWGG | 3 cut(s) | 61, 129, 262 |
| PspGI | CCWGG | 3 cut(s) | 61, 129, 262 |
| PspN4I | GGNNCC | 1 cut(s) | 171 |
| PspXI | VCTCGAGB | 1 cut(s) | 164 |
| PsuI | RGATCY | 1 cut(s) | 169 |
| SapI | GCTCTTC | 2 cut(s) | 204, 527 |
| SaqAI | TTAA | 1 cut(s) | 177 |
| SatI | GCNGC | 2 cut(s) | 87, 387 |
| Sau3AI | GATC | 3 cut(s) | 18, 169, 481 |
| SchI | GAGTC | 1 cut(s) | 379 |
| ScrFI | CCNGG | 4 cut(s) | 63, 131, 264, 355 |
| SetI | ASST | 8 cut(s) | 71, 83, 289, 302, 338, 366, 459, 492 |
| Sfr274I | CTCGAG | 1 cut(s) | 164 |
| SlaI | CTCGAG | 1 cut(s) | 164 |
| SmlI | CTYRAG | 1 cut(s) | 164 |
| SmoI | CTYRAG | 1 cut(s) | 164 |
| Sse9I | AATT | 2 cut(s) | 410, 439 |
| StyD4I | CCNGG | 4 cut(s) | 61, 129, 262, 353 |
| StyI | CCWWGG | 1 cut(s) | 453 |
| TaaI | ACNGT | 5 cut(s) | 93, 104, 182, 448, 472 |
| TaqI | TCGA | 1 cut(s) | 165 |
| TasI | AATT | 2 cut(s) | 410, 439 |
| TfiI | GAWTC | 1 cut(s) | 233 |
| Tru1I | TTAA | 1 cut(s) | 177 |
| Tru9I | TTAA | 1 cut(s) | 177 |
| TscAI | CASTG | 3 cut(s) | 98, 451, 544 |
| TseFI | GTSAC | 1 cut(s) | 104 |
| TseI | GCWGC | 2 cut(s) | 86, 386 |
| Tsp45I | GTSAC | 1 cut(s) | 104 |
| TspDTI | ATGAA | 3 cut(s) | 17, 156, 393 |
| TspRI | CASTG | 3 cut(s) | 98, 451, 544 |
| XapI | RAATTY | 1 cut(s) | 410 |
| XceI | RCATGY | 1 cut(s) | 202 |
| XhoI | CTCGAG | 1 cut(s) | 164 |