Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0013011

Physical Location & Seq

Genomic Coordinates Reverse (-)

19760784 .. 19762736

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGGACACTCAAGAAACCCCAAAATCCTCGTCCAAGAAACCATATTCAGGGCAAAGTTCCATTGATGTATTAGCTGCACAGTGTGAGAAATGCAAGAAATGGAGGGTGATTCAATCTGAAGAGGAGTTCGAAGACATCAGAAGCAAGCTCAGTGAGGAACCATTCTATTGCAACAGAAAATCTGGTGTGTCTTGTGAAGATCCTGCTGATATTGAGTACGATTCTACTAGGACATGGGTTGTGGACAAGCCCAACATGCCGAAGACACCAGAAGGGTTTAAGAGGCATTTGGTGCTTAGAAGAGACTATTCCAAACTGGATGCTTATTATATTACACCTGAGGGGAAAAAATTAAGATCCCAAAATGAGATCGCCACAATCTTGAAAGGCAATCCTAAGTACAAAGGCATATCCCCTTCAGATTTTGACTTTGGAACCCCAAAGGTTATGGAAGACACTGTTCCTGTGGATGTTCCTAAGAAGGTACCTGGTAGCAGCAACAAAAAACTTAAAACAACAAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

177

Amino Acids

20.05

Weight (kDa)

8.88

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CW	PF07496	27 - 71	5.2e-09	CW-type Zinc Finger
MBD	PF01429	85 - 152	2.1e-15	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63030
fragaria_vesca	FvH4_2g24220
malus_domestica	MD03G1271900.v1.1 MD11G1292500.v1.1
prunus_persica	Prupe.8G248100_v2.0.a1
pyrus_communis	pycom03g21650 pycom11g25890
rosa_chinensis	RchiOBHm_Chr6g0292001
rosa_laevigata	RLG00000012071
rosa_multiflora	Rmu_sc0008666.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175500 Rroxscaffold_7G00178020
rosa_rugosa	Rorug06G0222400
rosa_samantha	Rh6AG336200 Rh6BG343600 Rh6CG349800 Rh6DG336600
rosa_wichuraiana	Rw6G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	487
AccB1I	GGYRCC	1 cut(s)	487
AclWI	GGATC	2 cut(s)	197, 354
AcuI	CTGAAG	2 cut(s)	141, 405
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	3 cut(s)	221, 404, 489
AfiI	CCNNNNNNNGG	1 cut(s)	50
AgsI	TTSAA	2 cut(s)	116, 388
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	77, 151
AluI	AGCT	2 cut(s)	77, 151
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	2 cut(s)	197, 354
ApeKI	GCWGC	2 cut(s)	77, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
Asp718I	GGTACC	1 cut(s)	487
AsuHPI	GGTGA	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	132
AxyI	CCTNAGG	1 cut(s)	342
BanI	GGYRCC	1 cut(s)	487
BbsI	GAAGAC	3 cut(s)	141, 272, 462
BbvI	GCAGC	2 cut(s)	64, 510
BciT130I	CCWGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	231, 529
BisI	GCNGC	2 cut(s)	78, 499
BlsI	GCNGC	2 cut(s)	79, 500
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	162, 439, 489
BmrFI	CCNGG	1 cut(s)	492
BmsI	GCATC	1 cut(s)	313
BpiI	GAAGAC	3 cut(s)	141, 272, 462
Bpu14I	TTCGAA	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	1 cut(s)	50
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	328, 478
BseLI	CCNNNNNNNGG	1 cut(s)	50
BseMII	CTCAG	2 cut(s)	166, 333
BseNI	ACTGG	1 cut(s)	324
BseRI	GAGGAG	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	64, 510
BsgI	GTGCAG	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	487
BslI	CCNNNNNNNGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	300
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	202, 359, 372
BspCNI	CTCAG	2 cut(s)	165, 334
BspLI	GGNNCC	3 cut(s)	162, 439, 489
BspPI	GGATC	2 cut(s)	197, 354
BspT104I	TTCGAA	1 cut(s)	132
BspT107I	GGYRCC	1 cut(s)	487
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	202, 359, 372
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	84, 463
Bst6I	CTCTTC	2 cut(s)	117, 298
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	5 cut(s)	152, 299, 342, 399, 480
BstF5I	GGATG	2 cut(s)	328, 478
BstKTI	GATC	3 cut(s)	205, 362, 375
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	3 cut(s)	202, 359, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	259, 295
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	2 cut(s)	64, 510
BstV2I	GAAGAC	3 cut(s)	141, 272, 462
BstX2I	RGATCY	2 cut(s)	202, 359
BstYI	RGATCY	2 cut(s)	202, 359
Bsu36I	CCTNAGG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	328, 478
BtsIMutI	CAGTG	3 cut(s)	89, 160, 459
Cac8I	GCNNGC	1 cut(s)	149
CsiI	ACCWGGT	1 cut(s)	490
Csp6I	GTAC	3 cut(s)	220, 403, 488
CviAII	CATG	2 cut(s)	237, 259
CviJI	RGCY	3 cut(s)	77, 151, 253
CviKI_1	RGCY	3 cut(s)	77, 151, 253
CviQI	GTAC	3 cut(s)	220, 403, 488
DdeI	CTNAG	5 cut(s)	152, 299, 342, 399, 480
DpnI	GATC	3 cut(s)	204, 361, 374
DpnII	GATC	3 cut(s)	202, 359, 372
DraIII	CACNNNGTG	1 cut(s)	86
Eam1104I	CTCTTC	2 cut(s)	117, 298
EarI	CTCTTC	2 cut(s)	117, 298
Eco57I	CTGAAG	2 cut(s)	141, 405
Eco81I	CCTNAGG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	490
FaeI	CATG	2 cut(s)	240, 262
FaiI	YATR	6 cut(s)	46, 238, 260, 333, 413, 452
FatI	CATG	2 cut(s)	236, 258
Fnu4HI	GCNGC	2 cut(s)	78, 499
FokI	GGATG	2 cut(s)	335, 485
Fsp4HI	GCNGC	2 cut(s)	78, 499
FspBI	CTAG	2 cut(s)	231, 529
GluI	GCNGC	2 cut(s)	78, 499
Hin1II	CATG	2 cut(s)	240, 262
HinfI	GANTC	2 cut(s)	112, 224
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	3 cut(s)	121, 143, 424
Hpy188III	TCNNGA	2 cut(s)	14, 385
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	269, 429, 478
HpyCH4III	ACNGT	2 cut(s)	84, 463
HpyCH4V	TGCA	3 cut(s)	80, 96, 174
HpyF10VI	GCNNNNNNNGC	2 cut(s)	259, 295
HpyF3I	CTNAG	5 cut(s)	152, 299, 342, 399, 480
Hsp92II	CATG	2 cut(s)	240, 262
KpnI	GGTACC	1 cut(s)	491
Kzo9I	GATC	3 cut(s)	202, 359, 372
LpnPI	CCDG	9 cut(s)	36, 171, 219, 285, 305, 354, 477, 480, 504
Lsp1109I	GCAGC	2 cut(s)	64, 510
LweI	GCATC	1 cut(s)	313
MabI	ACCWGGT	1 cut(s)	490
MaeI	CTAG	2 cut(s)	231, 529
MalI	GATC	3 cut(s)	204, 361, 374
MboI	GATC	3 cut(s)	202, 359, 372
MboII	GAAGA	6 cut(s)	134, 146, 212, 277, 315, 467
MflI	RGATCY	2 cut(s)	202, 359
MluCI	AATT	1 cut(s)	353
MnlI	CCTC	6 cut(s)	40, 99, 118, 151, 279, 337
MseI	TTAA	3 cut(s)	282, 356, 513
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	2 cut(s)	259, 295
NdeII	GATC	3 cut(s)	202, 359, 372
NlaIII	CATG	2 cut(s)	240, 262
NlaIV	GGNNCC	3 cut(s)	162, 439, 489
NspI	RCATGY	1 cut(s)	262
NspV	TTCGAA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	112, 224
PkrI	GCNGC	2 cut(s)	79, 500
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	162, 439, 489
PsuI	RGATCY	2 cut(s)	202, 359
RsaI	GTAC	3 cut(s)	221, 404, 489
RsaNI	GTAC	3 cut(s)	220, 403, 488
SaqAI	TTAA	3 cut(s)	282, 356, 513
SatI	GCNGC	2 cut(s)	78, 499
Sau3AI	GATC	3 cut(s)	202, 359, 372
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	6 cut(s)	79, 153, 343, 450, 489, 493
SexAI	ACCWGGT	1 cut(s)	490
SfaNI	GCATC	1 cut(s)	313
SfuI	TTCGAA	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	1 cut(s)	353
SspMI	CTAG	2 cut(s)	231, 529
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	2 cut(s)	84, 463
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	353
TatI	WGTACW	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	112, 224
Tru1I	TTAA	3 cut(s)	282, 356, 513
Tru9I	TTAA	3 cut(s)	282, 356, 513
TscAI	CASTG	3 cut(s)	89, 160, 466
TseI	GCWGC	2 cut(s)	77, 498
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	3 cut(s)	89, 160, 466
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	2 cut(s)	231, 529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.