Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0013011

Physical Location & Seq

Genomic Coordinates Reverse (-)

21444464 .. 21446539

Gene Structure 2076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGCTGATTATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCGGCTGTTTGGCAGGAAGGAAAGAGAGAAAGAATTTTCCAGGAACAGAAAAAGCTTAATGGACAGCCAAAGAACCCCTAGAACGTCGTCCAAGAAACCACAGACAGGGACAAGTTCAATTGATCTATATGCTGCGCAGTGTGACGAATGCCATAAATGGAGGGTGATTAATTCAGAAGAAGAGTTTGAGGAAATCAGAAGCAAAATGAGTGAGGAACCGTTTTATTGCAACAAAAAACCTGGTGTGTCTTGTGATGATCCTGCCGATATTGAGTACAATAGCACTAGGACCTGGGCCATTGATAAGCCTGACCTTCAGAAGACCCCAGAAGGTTTTAAGAGACATTTGGTGCTTAGAAAAGATTATTCCAAACTAGATGCTTATTATATTACACCAAAGGGGAAAAAAGTGAGAACCCGAAATGAGATAGCAGCATTTTTAAAAGAAAACCCCATATACGAAGGCATATCTGCTTCAGATTTCGACTTTGCAAGCCCAAAGGTTATGGAAGACACTATCCCTGAGATTGTTGGTAAAAAGGGTTCTGATAGCAGCCACAAAAAAATGAGACCTCCGAAGGATGAGGAGGAGACGGGCAGTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

215

Amino Acids

24.71

Weight (kDa)

8.53

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63030
fragaria_vesca	FvH4_2g24220
malus_domestica	MD03G1271900.v1.1 MD11G1292500.v1.1
prunus_persica	Prupe.8G248100_v2.0.a1
pyrus_communis	pycom03g21650 pycom11g25890
rosa_chinensis	RchiOBHm_Chr6g0292001
rosa_laevigata	RLG00000012071
rosa_multiflora	Rmu_sc0008666.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175500 Rroxscaffold_7G00178020
rosa_rugosa	Rorug06G0222400
rosa_samantha	Rh6AG336200 Rh6BG343600 Rh6CG349800 Rh6DG336600
rosa_wichuraiana	Rw6G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	174
AclWI	GGATC	1 cut(s)	290
AcsI	RAATTY	1 cut(s)	71
AcuI	CTGAAG	2 cut(s)	338, 498
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	156
AjnI	CCWGG	3 cut(s)	77, 277, 329
AluBI	AGCT	1 cut(s)	93
AluI	AGCT	1 cut(s)	93
Alw26I	GTCTC	3 cut(s)	373, 601, 623
AlwI	GGATC	1 cut(s)	290
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	3 cut(s)	170, 470, 591
ApoI	RAATTY	1 cut(s)	71
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	327, 333
AsuHPI	GGTGA	1 cut(s)	214
AvaII	GGWCC	1 cut(s)	327
BbsI	GAAGAC	2 cut(s)	365, 555
BbvI	GCAGC	3 cut(s)	157, 482, 603
BciT130I	CCWGG	3 cut(s)	79, 279, 331
BcoDI	GTCTC	3 cut(s)	373, 601, 623
BfaI	CTAG	3 cut(s)	117, 324, 413
BisI	GCNGC	3 cut(s)	171, 471, 592
BlsI	GCNGC	3 cut(s)	172, 472, 593
Bme1390I	CCNGG	3 cut(s)	79, 279, 331
Bme18I	GGWCC	1 cut(s)	327
BmgT120I	GGNCC	2 cut(s)	327, 333
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	3 cut(s)	79, 279, 331
BmsI	GCATC	1 cut(s)	406
BpiI	GAAGAC	2 cut(s)	365, 555
BsaI	GGTCTC	1 cut(s)	601
BsaJI	CCNNGG	1 cut(s)	330
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
BseBI	CCWGG	3 cut(s)	79, 279, 331
BseDI	CCNNGG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	552
BseXI	GCAGC	3 cut(s)	157, 482, 603
BshFI	GGCC	1 cut(s)	335
BsiSI	CCGG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	3 cut(s)	373, 601, 623
BsmBI	CGTCTC	1 cut(s)	623
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	1 cut(s)	335
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	160, 295
BspANI	GGCC	1 cut(s)	335
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	290
BspTNI	GGTCTC	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	330
BssMI	GATC	2 cut(s)	160, 295
Bst2UI	CCWGG	3 cut(s)	79, 279, 331
Bst4CI	ACNGT	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	1 cut(s)	532
BstDEI	CTNAG	2 cut(s)	392, 561
BstF5I	GGATG	1 cut(s)	625
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	163, 298
BstMAI	GTCTC	3 cut(s)	373, 601, 623
BstMBI	GATC	2 cut(s)	160, 295
BstNI	CCWGG	3 cut(s)	79, 279, 331
BstSCI	CCNGG	3 cut(s)	77, 277, 329
BstV1I	GCAGC	3 cut(s)	157, 482, 603
BstV2I	GAAGAC	2 cut(s)	365, 555
BsuRI	GGCC	1 cut(s)	335
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	2 cut(s)	182, 643
BtsIMutI	CAGTG	2 cut(s)	182, 643
Cac8I	GCNNGC	1 cut(s)	532
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	327, 333
CsiI	ACCWGGT	1 cut(s)	277
Csp6I	GTAC	1 cut(s)	313
CviJI	RGCY	7 cut(s)	43, 93, 105, 335, 346, 534, 594
CviKI_1	RGCY	7 cut(s)	43, 93, 105, 335, 346, 534, 594
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	2 cut(s)	392, 561
DpnI	GATC	2 cut(s)	162, 297
DpnII	GATC	2 cut(s)	160, 295
DraI	TTTAAA	1 cut(s)	480
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco31I	GGTCTC	1 cut(s)	601
Eco47I	GGWCC	1 cut(s)	327
Eco57I	CTGAAG	2 cut(s)	338, 498
EcoO109I	RGGNCCY	1 cut(s)	327
EcoRII	CCWGG	3 cut(s)	77, 277, 329
Esp3I	CGTCTC	1 cut(s)	623
FaiI	YATR	9 cut(s)	166, 168, 192, 426, 494, 496, 506, 545, 643
FaqI	GGGAC	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	171, 471, 592
FokI	GGATG	1 cut(s)	632
Fsp4HI	GCNGC	3 cut(s)	171, 471, 592
FspBI	CTAG	3 cut(s)	117, 324, 413
FspI	TGCGCA	1 cut(s)	174
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	171, 471, 592
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	40
HhaI	GCGC	1 cut(s)	175
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HindIII	AAGCTT	1 cut(s)	91
HpaII	CCGG	1 cut(s)	40
HphI	GGTGA	1 cut(s)	214
Hpy188I	TCNGA	6 cut(s)	214, 236, 357, 517, 586, 615
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	5 cut(s)	49, 362, 362, 494, 610
HpyCH4III	ACNGT	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	267, 530
HpyF3I	CTNAG	2 cut(s)	392, 561
HpySE526I	ACGT	1 cut(s)	122
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	160, 295
Lsp1109I	GCAGC	3 cut(s)	157, 482, 603
LweI	GCATC	1 cut(s)	406
MabI	ACCWGGT	1 cut(s)	277
MaeI	CTAG	3 cut(s)	117, 324, 413
MaeII	ACGT	1 cut(s)	122
MaeIII	GTNAC	1 cut(s)	179
MalI	GATC	2 cut(s)	162, 297
MboI	GATC	2 cut(s)	160, 295
MboII	GAAGA	4 cut(s)	227, 230, 370, 560
MfeI	CAATTG	1 cut(s)	156
MluCI	AATT	3 cut(s)	71, 156, 208
MseI	TTAA	4 cut(s)	95, 207, 375, 479
MspI	CCGG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	79, 279, 331
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	3 cut(s)	79, 279, 331
NdeII	GATC	2 cut(s)	160, 295
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	174
PctI	GAATGC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	3 cut(s)	172, 472, 593
PpuMI	RGGWCCY	1 cut(s)	327
PshBI	ATTAAT	1 cut(s)	207
Psp5II	RGGWCCY	1 cut(s)	327
Psp6I	CCWGG	3 cut(s)	77, 277, 329
PspGI	CCWGG	3 cut(s)	77, 277, 329
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	2 cut(s)	327, 333
PspPPI	RGGWCCY	1 cut(s)	327
PsrI	GAACNNNNNNTAC	2 cut(s)	565, 597
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	4 cut(s)	95, 207, 375, 479
SatI	GCNGC	3 cut(s)	171, 471, 592
Sau3AI	GATC	2 cut(s)	160, 295
Sau96I	GGNCC	2 cut(s)	327, 333
ScrFI	CCNGG	3 cut(s)	79, 279, 331
SetI	ASST	8 cut(s)	95, 125, 280, 332, 354, 373, 543, 613
SexAI	ACCWGGT	1 cut(s)	277
SfaNI	GCATC	1 cut(s)	406
SinI	GGWCC	1 cut(s)	327
Sse9I	AATT	3 cut(s)	71, 156, 208
SspMI	CTAG	3 cut(s)	117, 324, 413
StyD4I	CCNGG	3 cut(s)	77, 277, 329
TaaI	ACNGT	1 cut(s)	258
TaiI	ACGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	522
TasI	AATT	3 cut(s)	71, 156, 208
TatI	WGTACW	1 cut(s)	312
Tru1I	TTAA	4 cut(s)	95, 207, 375, 479
Tru9I	TTAA	4 cut(s)	95, 207, 375, 479
TscAI	CASTG	2 cut(s)	182, 643
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	170, 470, 591
Tsp45I	GTSAC	1 cut(s)	179
TspRI	CASTG	2 cut(s)	182, 643
VpaK11BI	GGWCC	1 cut(s)	327
VspI	ATTAAT	1 cut(s)	207
XapI	RAATTY	1 cut(s)	71
XspI	CTAG	3 cut(s)	117, 324, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.