Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013011

Physical Location & Seq

Genomic Coordinates Reverse (-)

21912640 .. 21914662

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g21650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGACGGCCAATCCCCCAAAACATCGTCGTCCAAGAAACCAAATATAGCGAAAAGTTCGATTGATGTATATGCTGCACAGTGTGAAGAATGCAAGAAATGGAGAGTGATTCATTCAGAAGAAGAGTATGAGGAAATCAGGAGCAAAATCAGTACAGAACCCTTTTATTGCAACAAAAAATCTGGTGTGACTTGTGACGATGCTGCCGATATTGAGTACAGTGCTAGCAGGACCTGGGTCATTGATAAGCCTGATCTTCCGAAGACCCCAGAAGGTTTCAAGAGACATTTGGTGGCTAGAAAAGATTATTCCAAACTGGATACGTATTATATTACACCCAACGGAAAAAGACTAAGATCCAAAAATGAGATGGCAGCATTTTTAAGACAAAACCGTATGGATGAAGGCATATCCGCTTCAGATTTCGACTTCGCACCCCCAAAGGTAATGGAGGACACCGTTCCTGAGATCTTCAGTAAAAAGGGCTCTGATAGCGTCCGCAAAAAATTTAAAATGAGAAAGAATGAGGATAAGAGCACTGATATCACTGCTGAAGAAGATTTCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

190

Amino Acids

21.72

Weight (kDa)

6.77

Isoelectric Point (pI)

58.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CW	PF07496	24 - 70	5e-09	CW-type Zinc Finger
MBD	PF01429	81 - 151	6.7e-16	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63030
fragaria_vesca	FvH4_2g24220
malus_domestica	MD03G1271900.v1.1 MD11G1292500.v1.1
prunus_persica	Prupe.8G248100_v2.0.a1
pyrus_communis	pycom03g21650 pycom11g25890
rosa_chinensis	RchiOBHm_Chr6g0292001
rosa_laevigata	RLG00000012071
rosa_multiflora	Rmu_sc0008666.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175500 Rroxscaffold_7G00178020
rosa_rugosa	Rorug06G0222400
rosa_samantha	Rh6AG336200 Rh6BG343600 Rh6CG349800 Rh6DG336600
rosa_wichuraiana	Rw6G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	414, 499
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	506
AcuI	CTGAAG	2 cut(s)	402, 457
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	2 cut(s)	154, 218
AgsI	TTSAA	1 cut(s)	280
AjnI	CCWGG	1 cut(s)	233
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	1 cut(s)	277
AlwI	GGATC	1 cut(s)	351
AlwNI	CAGNNNCTG	1 cut(s)	234
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	3 cut(s)	74, 203, 374
ApoI	RAATTY	1 cut(s)	506
AspS9I	GGNCC	1 cut(s)	231
AsuNHI	GCTAGC	1 cut(s)	224
AvaII	GGWCC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	488
BbsI	GAAGAC	1 cut(s)	269
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	3 cut(s)	61, 190, 386
BccI	CCATC	1 cut(s)	364
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	1 cut(s)	235
BciVI	GTATCC	1 cut(s)	313
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	2 cut(s)	225, 297
BfuI	GTATCC	1 cut(s)	313
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	3 cut(s)	75, 204, 375
BlsI	GCNGC	3 cut(s)	76, 205, 376
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	1 cut(s)	231
BmgT120I	GGNCC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	235
BmsI	GCATC	1 cut(s)	190
BmtI	GCTAGC	1 cut(s)	228
BoxI	GACNNNNGTC	1 cut(s)	236
BpiI	GAAGAC	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	234
Bse1I	ACTGG	1 cut(s)	321
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	406
BseMII	CTCAG	1 cut(s)	456
BseNI	ACTGG	1 cut(s)	321
BseXI	GCAGC	3 cut(s)	61, 190, 386
BsgI	GTGCAG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	539
BsmAI	GTCTC	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	95
BsnI	GGCC	1 cut(s)	9
Bsp1286I	GDGCHC	2 cut(s)	488, 539
Bsp143I	GATC	3 cut(s)	253, 356, 468
BspACI	CCGC	2 cut(s)	414, 499
BspANI	GGCC	1 cut(s)	9
BspCNI	CTCAG	1 cut(s)	457
BspOI	GCTAGC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	3 cut(s)	253, 356, 468
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	4 cut(s)	81, 221, 395, 460
Bst6I	CTCTTC	1 cut(s)	117
BstBAI	YACGTR	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	226
BstDEI	CTNAG	2 cut(s)	353, 465
BstF5I	GGATG	1 cut(s)	406
BstKTI	GATC	3 cut(s)	256, 359, 471
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	3 cut(s)	253, 356, 468
BstMWI	GCNNNNNNNGC	1 cut(s)	492
BstNI	CCWGG	1 cut(s)	235
BstPAI	GACNNNNGTC	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	233
BstSNI	TACGTA	1 cut(s)	324
BstV1I	GCAGC	3 cut(s)	61, 190, 386
BstV2I	GAAGAC	1 cut(s)	269
BstX2I	RGATCY	2 cut(s)	356, 468
BstYI	RGATCY	2 cut(s)	356, 468
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	406
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	4 cut(s)	86, 226, 537, 546
Cac8I	GCNNGC	1 cut(s)	226
CaiI	CAGNNNCTG	1 cut(s)	234
Cfr13I	GGNCC	1 cut(s)	231
CseI	GACGC	1 cut(s)	484
Csp6I	GTAC	2 cut(s)	153, 217
CviJI	RGCY	4 cut(s)	9, 250, 296, 486
CviKI_1	RGCY	4 cut(s)	9, 250, 296, 486
CviQI	GTAC	2 cut(s)	153, 217
DdeI	CTNAG	2 cut(s)	353, 465
DpnI	GATC	3 cut(s)	255, 358, 470
DpnII	GATC	3 cut(s)	253, 356, 468
DraI	TTTAAA	1 cut(s)	511
DraIII	CACNNNGTG	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	117
Eco105I	TACGTA	1 cut(s)	324
Eco24I	GRGCYC	1 cut(s)	488
Eco32I	GATATC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	231
Eco57I	CTGAAG	2 cut(s)	402, 457
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	233
EcoRV	GATATC	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	488
FaiI	YATR	7 cut(s)	47, 70, 72, 129, 330, 398, 410
Fnu4HI	GCNGC	3 cut(s)	75, 204, 375
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	3 cut(s)	75, 204, 375
FspBI	CTAG	2 cut(s)	225, 297
GluI	GCNGC	3 cut(s)	75, 204, 375
HaeIII	GGCC	1 cut(s)	9
HgaI	GACGC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	109
Hpy188I	TCNGA	4 cut(s)	118, 261, 421, 490
Hpy188III	TCNNGA	3 cut(s)	139, 280, 464
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	266, 398
HpyCH4III	ACNGT	4 cut(s)	81, 221, 395, 460
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	3 cut(s)	77, 93, 171
HpyF10VI	GCNNNNNNNGC	1 cut(s)	492
HpyF3I	CTNAG	2 cut(s)	353, 465
HpySE526I	ACGT	1 cut(s)	323
Kzo9I	GATC	3 cut(s)	253, 356, 468
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	9 cut(s)	124, 168, 214, 220, 247, 264, 282, 302, 477
Lsp1109I	GCAGC	3 cut(s)	61, 190, 386
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	2 cut(s)	225, 297
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	2 cut(s)	187, 194
MalI	GATC	3 cut(s)	255, 358, 470
MboI	GATC	3 cut(s)	253, 356, 468
MboII	GAAGA	8 cut(s)	98, 131, 134, 248, 274, 463, 566, 569
MflI	RGATCY	2 cut(s)	356, 468
MhlI	GDGCHC	2 cut(s)	488, 539
MluCI	AATT	1 cut(s)	506
MnlI	CCTC	3 cut(s)	124, 445, 520
MseI	TTAA	2 cut(s)	383, 510
MspR9I	CCNGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	95
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	1 cut(s)	492
NdeII	GATC	3 cut(s)	253, 356, 468
NheI	GCTAGC	1 cut(s)	224
NmuCI	GTSAC	2 cut(s)	187, 194
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PctI	GAATGC	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	76, 205, 376
Ppu21I	YACGTR	1 cut(s)	324
PpuMI	RGGWCCY	1 cut(s)	231
PshAI	GACNNNNGTC	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspPI	GGNCC	1 cut(s)	231
PspPPI	RGGWCCY	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	234
PsuI	RGATCY	2 cut(s)	356, 468
RsaI	GTAC	2 cut(s)	154, 218
RsaNI	GTAC	2 cut(s)	153, 217
SaqAI	TTAA	2 cut(s)	383, 510
SatI	GCNGC	3 cut(s)	75, 204, 375
Sau3AI	GATC	3 cut(s)	253, 356, 468
Sau96I	GGNCC	1 cut(s)	231
ScrFI	CCNGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	488, 539
SetI	ASST	4 cut(s)	236, 277, 326, 447
SfaNI	GCATC	1 cut(s)	190
SinI	GGWCC	1 cut(s)	231
SnaBI	TACGTA	1 cut(s)	324
Sse9I	AATT	1 cut(s)	506
SsiI	CCGC	2 cut(s)	414, 499
SspMI	CTAG	2 cut(s)	225, 297
StyD4I	CCNGG	1 cut(s)	233
TaaI	ACNGT	4 cut(s)	81, 221, 395, 460
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	3 cut(s)	59, 426, 564
TasI	AATT	1 cut(s)	506
TatI	WGTACW	2 cut(s)	152, 216
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	383, 510
Tru9I	TTAA	2 cut(s)	383, 510
TscAI	CASTG	4 cut(s)	86, 226, 544, 553
TseFI	GTSAC	2 cut(s)	187, 194
TseI	GCWGC	3 cut(s)	74, 203, 374
Tsp45I	GTSAC	2 cut(s)	187, 194
TspDTI	ATGAA	2 cut(s)	101, 417
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	4 cut(s)	86, 226, 544, 553
VpaK11BI	GGWCC	1 cut(s)	231
XapI	RAATTY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XspI	CTAG	2 cut(s)	225, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.