Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0013011

Physical Location & Seq

Genomic Coordinates Reverse (-)

53996775 .. 53998773

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAGGGTACTCACGGAACCCCAAAATCCTCGTCCAAGAAACCATATTCAGGGCAAAGTTCAATTGATGTACTTGCTGCACAATGTGAGAAATGCAAGAAATGGAGGGTGATTCAATCTGAAGAAGAGTTCGAAGAAATCAGAAGCAAGCTCAGTGAGGAACCATTCTATTGCAACAGAAGATCTGCTGTGTCTTGTGAAGATCCTGCTGATATTGAGTACGATTCTACTAGGACATGGGCTGTTGACAAGCCTGACATTCAGAAGACACCGGAAGGGTTTAAGAGGCATTTGGTGCTTAGAAAAGACTATTCCAAACTGGATACCTATTATATTACACCTGAGGGCAAAAAAGTGAGATCCCAAAATGAGGTAGCTGCAATCTTGAAAAGCAATCCCAAGTACAAAGGCATATCCCCTTCAGATTTTGACTTTGGAAGCCCAAAAGTCATGGAAGACACTGTTCCTGTGGATGTTCCTAAGAAGGTTCCTGGTAGCAGCAACAAAAAACTTAAAACAACAATGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0008327 GO:0036094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0097159 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MBD zf-CW

Protein Analysis

176

Amino Acids

19.93

Weight (kDa)

8.89

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CW	PF07496	27 - 71	6.3e-09	CW-type Zinc Finger
MBD	PF01429	83 - 152	1.3e-15	Methyl-CpG binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63030
fragaria_vesca	FvH4_2g24220
malus_domestica	MD03G1271900.v1.1 MD11G1292500.v1.1
prunus_persica	Prupe.8G248100_v2.0.a1
pyrus_communis	pycom03g21650 pycom11g25890
rosa_chinensis	RchiOBHm_Chr6g0292001
rosa_laevigata	RLG00000012071
rosa_multiflora	Rmu_sc0008666.1_g000005
rosa_roxburghii	Rroxscaffold_7G00175500 Rroxscaffold_7G00178020
rosa_rugosa	Rorug06G0222400
rosa_samantha	Rh6AG336200 Rh6BG343600 Rh6CG349800 Rh6DG336600
rosa_wichuraiana	Rw6G029270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	197, 354
AcuI	CTGAAG	2 cut(s)	141, 405
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	4 cut(s)	10, 72, 221, 404
AfiI	CCNNNNNNNGG	2 cut(s)	50, 370
AgsI	TTSAA	3 cut(s)	63, 116, 388
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	2 cut(s)	151, 377
AluI	AGCT	2 cut(s)	151, 377
AlwI	GGATC	2 cut(s)	197, 354
ApeKI	GCWGC	3 cut(s)	77, 377, 498
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AsuHPI	GGTGA	1 cut(s)	121
AsuII	TTCGAA	1 cut(s)	132
AxyI	CCTNAGG	1 cut(s)	342
BbsI	GAAGAC	2 cut(s)	272, 462
BbvI	GCAGC	3 cut(s)	64, 364, 510
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	316
BfaI	CTAG	1 cut(s)	231
BfuI	GTATCC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	78, 378, 499
BlsI	GCNGC	3 cut(s)	79, 379, 500
Bme1390I	CCNGG	1 cut(s)	492
BmiI	GGNNCC	3 cut(s)	19, 162, 489
BmrFI	CCNGG	1 cut(s)	492
BpiI	GAAGAC	2 cut(s)	272, 462
Bpu14I	TTCGAA	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 370
Bse1I	ACTGG	1 cut(s)	324
Bse21I	CCTNAGG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	492
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	2 cut(s)	50, 370
BseMII	CTCAG	2 cut(s)	166, 333
BseNI	ACTGG	1 cut(s)	324
BseXI	GCAGC	3 cut(s)	64, 364, 510
BsgI	GTGCAG	1 cut(s)	63
BsiSI	CCGG	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	50, 370
Bsp119I	TTCGAA	1 cut(s)	132
Bsp143I	GATC	3 cut(s)	182, 202, 359
BspCNI	CTCAG	2 cut(s)	165, 334
BspLI	GGNNCC	3 cut(s)	19, 162, 489
BspPI	GGATC	2 cut(s)	197, 354
BspT104I	TTCGAA	1 cut(s)	132
BsrI	ACTGG	1 cut(s)	324
BssMI	GATC	3 cut(s)	182, 202, 359
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	295
BstBI	TTCGAA	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	4 cut(s)	152, 299, 342, 480
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	3 cut(s)	185, 205, 362
BstMBI	GATC	3 cut(s)	182, 202, 359
BstMWI	GCNNNNNNNGC	1 cut(s)	295
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	1 cut(s)	490
BstV1I	GCAGC	3 cut(s)	64, 364, 510
BstV2I	GAAGAC	2 cut(s)	272, 462
BstX2I	RGATCY	3 cut(s)	182, 202, 359
BstYI	RGATCY	3 cut(s)	182, 202, 359
Bsu36I	CCTNAGG	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	316
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	2 cut(s)	160, 459
Cac8I	GCNNGC	1 cut(s)	149
Csp6I	GTAC	4 cut(s)	9, 71, 220, 403
CviAII	CATG	2 cut(s)	237, 451
CviJI	RGCY	5 cut(s)	151, 242, 253, 377, 441
CviKI_1	RGCY	5 cut(s)	151, 242, 253, 377, 441
CviQI	GTAC	4 cut(s)	9, 71, 220, 403
DdeI	CTNAG	4 cut(s)	152, 299, 342, 480
DpnI	GATC	3 cut(s)	184, 204, 361
DpnII	GATC	3 cut(s)	182, 202, 359
DraIII	CACNNNGTG	1 cut(s)	86
Eam1104I	CTCTTC	1 cut(s)	120
EarI	CTCTTC	1 cut(s)	120
Eco57I	CTGAAG	2 cut(s)	141, 405
Eco81I	CCTNAGG	1 cut(s)	342
EcoRII	CCWGG	1 cut(s)	490
FaeI	CATG	2 cut(s)	240, 454
FaiI	YATR	5 cut(s)	46, 238, 333, 413, 452
FatI	CATG	2 cut(s)	236, 450
Fnu4HI	GCNGC	3 cut(s)	78, 378, 499
FokI	GGATG	1 cut(s)	485
Fsp4HI	GCNGC	3 cut(s)	78, 378, 499
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	3 cut(s)	78, 378, 499
HapII	CCGG	1 cut(s)	272
Hin1II	CATG	2 cut(s)	240, 454
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	2 cut(s)	112, 224
HpaII	CCGG	1 cut(s)	272
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	4 cut(s)	121, 143, 264, 424
Hpy188III	TCNNGA	1 cut(s)	385
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	269, 429, 478
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4V	TGCA	4 cut(s)	80, 96, 174, 380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	295
HpyF3I	CTNAG	4 cut(s)	152, 299, 342, 480
Hsp92II	CATG	2 cut(s)	240, 454
Kzo9I	GATC	3 cut(s)	182, 202, 359
LpnPI	CCDG	9 cut(s)	36, 219, 267, 285, 305, 354, 477, 480, 504
Lsp1109I	GCAGC	3 cut(s)	64, 364, 510
MaeI	CTAG	1 cut(s)	231
MalI	GATC	3 cut(s)	184, 204, 361
MboI	GATC	3 cut(s)	182, 202, 359
MboII	GAAGA	7 cut(s)	134, 137, 146, 192, 212, 277, 467
MfeI	CAATTG	1 cut(s)	63
MflI	RGATCY	3 cut(s)	182, 202, 359
MluCI	AATT	1 cut(s)	63
MnlI	CCTC	6 cut(s)	40, 99, 151, 279, 337, 364
MseI	TTAA	2 cut(s)	282, 513
MspI	CCGG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	492
MunI	CAATTG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	295
NdeII	GATC	3 cut(s)	182, 202, 359
NlaIII	CATG	2 cut(s)	240, 454
NlaIV	GGNNCC	3 cut(s)	19, 162, 489
NspV	TTCGAA	1 cut(s)	132
PfeI	GAWTC	2 cut(s)	112, 224
PkrI	GCNGC	3 cut(s)	79, 379, 500
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	3 cut(s)	19, 162, 489
PsuI	RGATCY	3 cut(s)	182, 202, 359
RsaI	GTAC	4 cut(s)	10, 72, 221, 404
RsaNI	GTAC	4 cut(s)	9, 71, 220, 403
SaqAI	TTAA	2 cut(s)	282, 513
SatI	GCNGC	3 cut(s)	78, 378, 499
Sau3AI	GATC	3 cut(s)	182, 202, 359
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	6 cut(s)	153, 329, 343, 375, 379, 489
SfuI	TTCGAA	1 cut(s)	132
Sse9I	AATT	1 cut(s)	63
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	463
TaqI	TCGA	1 cut(s)	132
TasI	AATT	1 cut(s)	63
TatI	WGTACW	2 cut(s)	70, 402
TfiI	GAWTC	2 cut(s)	112, 224
Tru1I	TTAA	2 cut(s)	282, 513
Tru9I	TTAA	2 cut(s)	282, 513
TscAI	CASTG	2 cut(s)	160, 466
TseI	GCWGC	3 cut(s)	77, 377, 498
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	160, 466
XspI	CTAG	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.