AT3G63095

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017945
Physical Location & Seq
Forward (+)
23315506 .. 23316258
753 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G63095.1

Sequence Viewer

Length: 753 bp
ATGGATACACTTTTTATTGCAGTAACTCTGGCTCTCGCTCTCTCCTCTTTCACAAGAGGCCAGAGAGTGATACAGATTCCACCACCACGTCCACTATGCGCGTCTCAATACGCCCTAGCTAACTACGCCTGCTCACGTCTCCCAATGCACACTGTCCCACCACCTGCCCCCATTACCCCACCTCCTGCTCCCATCGCTCCCCCGCCTCCTGAACATGACCACCACGACCACGACCATGACCATGACCACGACCACGACCACGACGATGACCACGATGATGATGATGACCATGACCACGATGATGACCACGATCACGACCATGACGATGATCACGACCATGACGACGATGACCGTGACCGTGACCGTGACCGTGACCGCGACCGTGACCGTGACCGCGATCATGACCGTGCTCACGATGACCATGACCATAACCATGACCATGACAATGATCACAATGACAACAATCACGACCATAATCATGACGCCGACCACCACAACAATGACGACAACAGCCACGATCAACACCGCCGTCGACACCACCGCCACCACCACCGCCACCATCATCGACACAGAGAAGAGACGTTTGCGCAACAAGAGTGCTGCAAGTGGTTGAAGCAAATGGACAACGAGTGCGTGTGCGACCTTCTGGTCCGGCTTCCGCCATTGCTAGCCAAACCAATTCATAACTATACAGTCTTTGTGGATGAGTCATGTATCGTCACTTTCGTCTGTGGAGGCAGACTCATTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

250

Amino Acids

29.51

Weight (kDa)

5.41

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
AasI GACNNNNNNGTC 1 cut(s) 647
Acc16I TGCGCA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 172
AccI GTMKAC 1 cut(s) 532
AccII CGCG 3 cut(s) 101, 378, 396
AciI CCGC 7 cut(s) 203, 376, 394, 526, 541, 553, 659
AcyI GRCGYC 1 cut(s) 483
AgsI TTSAA 1 cut(s) 613
AjiI CACGTC 2 cut(s) 89, 137
AluBI AGCT 2 cut(s) 119, 750
AluI AGCT 2 cut(s) 119, 750
Alw21I GWGCWC 1 cut(s) 412
Alw26I GTCTC 3 cut(s) 108, 143, 572
AoxI GGCC 1 cut(s) 58
ApeKI GCWGC 1 cut(s) 600
AspLEI GCGC 2 cut(s) 101, 589
AspS9I GGNCC 1 cut(s) 649
AsuNHI GCTAGC 1 cut(s) 667
AvaII GGWCC 1 cut(s) 649
Bbv12I GWGCWC 1 cut(s) 412
BbvI GCAGC 1 cut(s) 587
BccI CCATC 2 cut(s) 200, 567
BceAI ACGGC 1 cut(s) 513
BclI TGATCA 2 cut(s) 328, 448
BcoDI GTCTC 3 cut(s) 108, 143, 572
BfaI CTAG 2 cut(s) 116, 668
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 1 cut(s) 601
BlsI GCNGC 1 cut(s) 602
Bme18I GGWCC 1 cut(s) 649
BmgBI CACGTC 2 cut(s) 89, 137
BmgT120I GGNCC 1 cut(s) 649
BmtI GCTAGC 1 cut(s) 671
BplI GAGNNNNNCTC 1 cut(s) 726
BsaHI GRCGYC 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bse3DI GCAATG 1 cut(s) 662
BseGI GGATG 1 cut(s) 709
BseMI GCAATG 1 cut(s) 662
BseRI GAGGAG 1 cut(s) 34
BseXI GCAGC 1 cut(s) 587
Bsh1236I CGCG 3 cut(s) 101, 378, 396
Bsh1285I CGRYCG 1 cut(s) 382
BshFI GGCC 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 382
BsiHKAI GWGCWC 1 cut(s) 412
BsiSI CCGG 1 cut(s) 652
BslFI GGGAC 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 108, 143, 572
BsmBI CGTCTC 3 cut(s) 108, 143, 572
BsmFI GGGAC 1 cut(s) 140
BsnI GGCC 1 cut(s) 60
Bsp1286I GDGCHC 1 cut(s) 412
Bsp143I GATC 5 cut(s) 310, 328, 397, 448, 517
BspACI CCGC 7 cut(s) 203, 376, 394, 526, 541, 553, 659
BspANI GGCC 1 cut(s) 60
BspFNI CGCG 3 cut(s) 101, 378, 396
BspHI TCATGA 2 cut(s) 400, 478
BspMI ACCTGC 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 671
BsrDI GCAATG 1 cut(s) 662
BssMI GATC 5 cut(s) 310, 328, 397, 448, 517
BssNI GRCGYC 1 cut(s) 483
Bst4CI ACNGT 9 cut(s) 154, 353, 359, 365, 371, 383, 389, 407, 694
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 130, 669
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 3 cut(s) 101, 378, 396
BstHHI GCGC 2 cut(s) 101, 589
BstKTI GATC 5 cut(s) 313, 331, 400, 451, 520
BstMAI GTCTC 3 cut(s) 108, 143, 572
BstMBI GATC 5 cut(s) 310, 328, 397, 448, 517
BstMCI CGRYCG 1 cut(s) 382
BstMWI GCNNNNNNNGC 2 cut(s) 125, 194
BstUI CGCG 3 cut(s) 101, 378, 396
BstV1I GCAGC 1 cut(s) 587
BsuRI GGCC 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 178
BtrI CACGTC 2 cut(s) 89, 137
BtsCI GGATG 1 cut(s) 709
BtsIMutI CAGTG 1 cut(s) 150
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 2 cut(s) 130, 669
CciI TCATGA 2 cut(s) 400, 478
CfoI GCGC 2 cut(s) 101, 589
Cfr13I GGNCC 1 cut(s) 649
CseI GACGC 2 cut(s) 90, 491
CviJI RGCY 7 cut(s) 32, 60, 119, 513, 655, 671, 750
CviKI_1 RGCY 7 cut(s) 32, 60, 119, 513, 655, 671, 750
DpnI GATC 5 cut(s) 312, 330, 399, 450, 519
DpnII GATC 5 cut(s) 310, 328, 397, 448, 517
DrdI GACNNNNNNGTC 1 cut(s) 647
DseDI GACNNNNNNGTC 1 cut(s) 647
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 1 cut(s) 648
Eco47I GGWCC 1 cut(s) 649
Esp3I CGTCTC 3 cut(s) 108, 143, 572
FaqI GGGAC 1 cut(s) 140
FauI CCCGC 1 cut(s) 210
FbaI TGATCA 2 cut(s) 328, 448
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 1 cut(s) 601
FokI GGATG 1 cut(s) 716
Fsp4HI GCNGC 1 cut(s) 601
FspBI CTAG 2 cut(s) 116, 668
FspI TGCGCA 1 cut(s) 588
GlaI GCGC 2 cut(s) 100, 588
GluI GCNGC 1 cut(s) 601
HaeIII GGCC 1 cut(s) 60
HapII CCGG 1 cut(s) 652
HgaI GACGC 2 cut(s) 90, 491
HhaI GCGC 2 cut(s) 101, 589
Hin1I GRCGYC 1 cut(s) 483
Hin6I GCGC 2 cut(s) 99, 587
HinP1I GCGC 2 cut(s) 99, 587
HincII GTYRAC 1 cut(s) 533
HindII GTYRAC 1 cut(s) 533
HinfI GANTC 3 cut(s) 76, 707, 741
HpaII CCGG 1 cut(s) 652
Hpy166II GTNNAC 2 cut(s) 92, 533
Hpy188III TCNNGA 7 cut(s) 209, 314, 332, 401, 413, 467, 479
Hpy8I GTNNAC 2 cut(s) 92, 533
Hpy99I CGWCG 3 cut(s) 266, 347, 534
HpyAV CCTTC 1 cut(s) 653
HpyCH4III ACNGT 9 cut(s) 154, 353, 359, 365, 371, 383, 389, 407, 694
HpyCH4IV ACGT 3 cut(s) 88, 136, 581
HpyCH4V TGCA 3 cut(s) 20, 148, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 125, 194
HpySE526I ACGT 3 cut(s) 88, 136, 581
Hsp92I GRCGYC 1 cut(s) 483
HspAI GCGC 2 cut(s) 99, 587
Ksp22I TGATCA 2 cut(s) 328, 448
Kzo9I GATC 5 cut(s) 310, 328, 397, 448, 517
LmnI GCTCC 2 cut(s) 193, 202
LpnPI CCDG 8 cut(s) 14, 74, 142, 177, 198, 222, 632, 665
Lsp1109I GCAGC 1 cut(s) 587
MaeI CTAG 2 cut(s) 116, 668
MaeII ACGT 3 cut(s) 88, 136, 581
MaeIII GTNAC 8 cut(s) 22, 353, 359, 365, 371, 383, 389, 718
MalI GATC 5 cut(s) 312, 330, 399, 450, 519
MboI GATC 5 cut(s) 310, 328, 397, 448, 517
MboII GAAGA 1 cut(s) 587
MhlI GDGCHC 1 cut(s) 412
MluCI AATT 1 cut(s) 678
MlyI GAGTC 2 cut(s) 716, 735
MnlI CCTC 5 cut(s) 50, 55, 192, 216, 728
MspI CCGG 1 cut(s) 652
MvnI CGCG 3 cut(s) 101, 378, 396
MwoI GCNNNNNNNGC 2 cut(s) 125, 194
NdeII GATC 5 cut(s) 310, 328, 397, 448, 517
NheI GCTAGC 1 cut(s) 667
NmuCI GTSAC 7 cut(s) 353, 359, 365, 371, 383, 389, 718
NsbI TGCGCA 1 cut(s) 588
PagI TCATGA 2 cut(s) 400, 478
PaqCI CACCTGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 6 cut(s) 261, 270, 321, 330, 339, 723
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 1 cut(s) 602
PleI GAGTC 2 cut(s) 715, 735
PpsI GAGTC 2 cut(s) 715, 735
PspPI GGNCC 1 cut(s) 649
SalI GTCGAC 1 cut(s) 531
SatI GCNGC 1 cut(s) 601
Sau3AI GATC 5 cut(s) 310, 328, 397, 448, 517
Sau96I GGNCC 1 cut(s) 649
SchI GAGTC 2 cut(s) 716, 735
SduI GDGCHC 1 cut(s) 412
SetI ASST 8 cut(s) 91, 121, 139, 166, 184, 584, 645, 752
SinI GGWCC 1 cut(s) 649
Sse9I AATT 1 cut(s) 678
SsiI CCGC 7 cut(s) 203, 376, 394, 526, 541, 553, 659
SspMI CTAG 2 cut(s) 116, 668
TaaI ACNGT 9 cut(s) 154, 353, 359, 365, 371, 383, 389, 407, 694
TaiI ACGT 3 cut(s) 91, 139, 584
TaqI TCGA 2 cut(s) 532, 565
TasI AATT 1 cut(s) 678
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 7 cut(s) 353, 359, 365, 371, 383, 389, 718
TseI GCWGC 1 cut(s) 600
Tsp45I GTSAC 7 cut(s) 353, 359, 365, 371, 383, 389, 718
TspDTI ATGAA 1 cut(s) 671
TspRI CASTG 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 532
XspI CTAG 2 cut(s) 116, 668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.