Rmu_sc0003296.1_g000002

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003296.1
OG0017945
Physical Location & Seq
Reverse (-)
2168 .. 2731
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003296.1_g000002.1.cds

Sequence Viewer

Length: 564 bp
atgatggagagggtcaagaagattcttaccttgtttgcagcaaccctgctattgctgcccatcatggaggcgcagcattatcttcctccccgcccattttgtgcatcccaattcgcacttgctagctacgcatgttcattgcagccgtatactccaatgccaactccacaacctcctgccccttcacctcctgatgacgacgacgacaacgatgatgacgacgatgatggtggtggtggtggtggtgatgacggtcgtgatggtggtggtgatcgaccagagcatggtagcggccacggccatggtcgcagccacggccacggacatgggcgcaatcgcaaacaacaacgtcgccatagacacaggcatgggcaccaccataggtcagaaacaccactgtcaccccaagaagaaaattgctgcaaatggttgagccagcttgatagccagtgtgtctgtgagttgcttctgcgcttgcccactttcctccttaagcctgcacacacttactctctatttgttggatcgtcctgcaacgttaaatacacttgcgcacacccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.67

Weight (kDa)

6.41

Isoelectric Point (pI)

63.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 553
AccB1I GGYRCC 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 284
AccI GTMKAC 1 cut(s) 149
AciI CCGC 2 cut(s) 91, 291
AclI AACGTT 1 cut(s) 537
AclWI GGATC 1 cut(s) 532
AcoI YGGCCR 3 cut(s) 292, 298, 316
AfiI CCNNNNNNNGG 1 cut(s) 284
AflII CTTAAG 1 cut(s) 491
AluBI AGCT 2 cut(s) 126, 439
AluI AGCT 2 cut(s) 126, 439
AlwI GGATC 1 cut(s) 532
AoxI GGCC 3 cut(s) 292, 298, 316
ApeKI GCWGC 6 cut(s) 38, 55, 73, 142, 309, 420
AspLEI GCGC 4 cut(s) 73, 333, 474, 554
AsuHPI GGTGA 4 cut(s) 177, 257, 281, 393
AsuNHI GCTAGC 1 cut(s) 122
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 1 cut(s) 372
BbvI GCAGC 6 cut(s) 42, 50, 85, 154, 321, 407
BccI CCATC 3 cut(s) 68, 221, 254
BceAI ACGGC 3 cut(s) 130, 313, 331
BfaI CTAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 491
BisI GCNGC 7 cut(s) 39, 56, 74, 143, 292, 310, 421
BlsI GCNGC 7 cut(s) 40, 57, 75, 144, 293, 311, 422
BmiI GGNNCC 1 cut(s) 374
BmsI GCATC 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 295, 301, 313, 319
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 1 cut(s) 137
BseDI CCNNGG 4 cut(s) 295, 301, 313, 319
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMI GCAATG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 6 cut(s) 42, 50, 85, 154, 321, 407
BsgI GTGCAG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 294, 300, 318
BshNI GGYRCC 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 256
BslI CCNNNNNNNGG 1 cut(s) 284
BsnI GGCC 3 cut(s) 294, 300, 318
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 2 cut(s) 271, 524
Bsp19I CCATGG 1 cut(s) 301
BspACI CCGC 2 cut(s) 91, 291
BspANI GGCC 3 cut(s) 294, 300, 318
BspLI GGNNCC 1 cut(s) 374
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 532
BspT107I GGYRCC 1 cut(s) 372
BspTI CTTAAG 1 cut(s) 491
BsrDI GCAATG 1 cut(s) 137
BsrI ACTGG 1 cut(s) 448
BssECI CCNNGG 4 cut(s) 295, 301, 313, 319
BssMI GATC 2 cut(s) 271, 524
BssNAI GTATAC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 301
Bst1107I GTATAC 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 254, 399
BstAFI CTTAAG 1 cut(s) 491
BstC8I GCNNGC 4 cut(s) 124, 437, 476, 498
BstDSI CCRYGG 4 cut(s) 295, 301, 313, 319
BstF5I GGATG 1 cut(s) 104
BstHHI GCGC 4 cut(s) 73, 333, 474, 554
BstKTI GATC 2 cut(s) 274, 527
BstMBI GATC 2 cut(s) 271, 524
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 5 cut(s) 55, 128, 297, 306, 315
BstNSI RCATGY 1 cut(s) 135
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 6 cut(s) 42, 50, 85, 154, 321, 407
BstXI CCANNNNNNTGG 2 cut(s) 302, 326
BstZ17I GTATAC 1 cut(s) 150
BsuRI GGCC 3 cut(s) 294, 300, 318
BtgI CCRYGG 4 cut(s) 295, 301, 313, 319
BtsCI GGATG 1 cut(s) 104
BtsIMutI CAGTG 2 cut(s) 395, 455
Cac8I GCNNGC 4 cut(s) 124, 437, 476, 498
CfoI GCGC 4 cut(s) 73, 333, 474, 554
CviAII CATG 7 cut(s) 64, 132, 284, 302, 326, 368, 561
DpnI GATC 2 cut(s) 273, 526
DpnII GATC 2 cut(s) 271, 524
EaeI YGGCCR 3 cut(s) 292, 298, 316
Eco130I CCWWGG 1 cut(s) 301
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 7 cut(s) 67, 135, 287, 305, 329, 371, 564
FatI CATG 7 cut(s) 63, 131, 283, 301, 325, 367, 560
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 7 cut(s) 39, 56, 74, 143, 292, 310, 421
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 7 cut(s) 39, 56, 74, 143, 292, 310, 421
FspBI CTAG 1 cut(s) 123
FspI TGCGCA 1 cut(s) 553
GlaI GCGC 4 cut(s) 72, 332, 473, 553
GluI GCNGC 7 cut(s) 39, 56, 74, 143, 292, 310, 421
HaeIII GGCC 3 cut(s) 294, 300, 318
HhaI GCGC 4 cut(s) 73, 333, 474, 554
Hin1II CATG 7 cut(s) 67, 135, 287, 305, 329, 371, 564
Hin6I GCGC 4 cut(s) 71, 331, 472, 552
HinP1I GCGC 4 cut(s) 71, 331, 472, 552
HinfI GANTC 1 cut(s) 22
HphI GGTGA 4 cut(s) 177, 257, 281, 393
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 1 cut(s) 388
Hpy188III TCNNGA 3 cut(s) 16, 191, 257
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 4 cut(s) 203, 206, 224, 354
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 2 cut(s) 254, 399
HpyCH4IV ACGT 2 cut(s) 349, 537
HpyCH4V TGCA 6 cut(s) 38, 104, 142, 423, 500, 534
HpyF10VI GCNNNNNNNGC 5 cut(s) 55, 128, 297, 306, 315
HpySE526I ACGT 2 cut(s) 349, 537
Hsp92II CATG 7 cut(s) 67, 135, 287, 305, 329, 371, 564
HspAI GCGC 4 cut(s) 71, 331, 472, 552
Kzo9I GATC 2 cut(s) 271, 524
LpnPI CCDG 9 cut(s) 59, 189, 204, 291, 349, 449, 461, 510, 544
Lsp1109I GCAGC 6 cut(s) 42, 50, 85, 154, 321, 407
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 123
MaeII ACGT 2 cut(s) 349, 537
MaeIII GTNAC 1 cut(s) 399
MalI GATC 2 cut(s) 273, 526
MboI GATC 2 cut(s) 271, 524
MboII GAAGA 3 cut(s) 31, 74, 422
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 2 cut(s) 110, 415
MmeI TCCRAC 1 cut(s) 502
MnlI CCTC 6 cut(s) 3, 61, 96, 183, 198, 497
MseI TTAA 2 cut(s) 492, 540
MslI CAYNNNNRTG 4 cut(s) 300, 324, 366, 559
MspCI CTTAAG 1 cut(s) 491
MwoI GCNNNNNNNGC 5 cut(s) 55, 128, 297, 306, 315
NcoI CCATGG 1 cut(s) 301
NdeII GATC 2 cut(s) 271, 524
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 7 cut(s) 67, 135, 287, 305, 329, 371, 564
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 399
NsbI TGCGCA 1 cut(s) 553
NspI RCATGY 1 cut(s) 135
PcsI WCGNNNNNNNCGW 2 cut(s) 207, 216
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 7 cut(s) 40, 57, 75, 144, 293, 311, 422
Psp1406I AACGTT 1 cut(s) 537
PspN4I GGNNCC 1 cut(s) 374
RseI CAYNNNNRTG 4 cut(s) 300, 324, 366, 559
SaqAI TTAA 2 cut(s) 492, 540
SatI GCNGC 7 cut(s) 39, 56, 74, 143, 292, 310, 421
Sau3AI GATC 2 cut(s) 271, 524
SduI GDGCHC 1 cut(s) 375
SetI ASST 8 cut(s) 32, 128, 175, 190, 352, 386, 441, 540
SfaNI GCATC 1 cut(s) 113
SmiMI CAYNNNNRTG 4 cut(s) 300, 324, 366, 559
SmlI CTYRAG 1 cut(s) 491
SmoI CTYRAG 1 cut(s) 491
Sse9I AATT 2 cut(s) 110, 415
SsiI CCGC 2 cut(s) 91, 291
SspMI CTAG 1 cut(s) 123
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 254, 399
TaiI ACGT 2 cut(s) 352, 540
TaqI TCGA 1 cut(s) 274
TasI AATT 2 cut(s) 110, 415
TauI GCSGC 1 cut(s) 294
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 492, 540
Tru9I TTAA 2 cut(s) 492, 540
TscAI CASTG 2 cut(s) 402, 455
TseFI GTSAC 1 cut(s) 399
TseI GCWGC 6 cut(s) 38, 55, 73, 142, 309, 420
Tsp45I GTSAC 1 cut(s) 399
TspDTI ATGAA 1 cut(s) 126
TspGWI ACGGA 1 cut(s) 336
TspRI CASTG 2 cut(s) 402, 455
Van91I CCANNNNNTGG 1 cut(s) 284
Vha464I CTTAAG 1 cut(s) 491
XceI RCATGY 1 cut(s) 135
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.