Prupe.8G243700_v2.0.a1

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017945
Physical Location & Seq
Reverse (-)
21253646 .. 21254500
855 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G243700.1

Sequence Viewer

Length: 513 bp
ATGGAGAGAGTCAACATTCTTACTTTAACCTTGTTTGTAGCTTCCCTACTATTTGTGCCCAAGATGGAGGCACAGCGTCTATTCCCACCTCCCCGCCCTCTTTGTGCTTCACAATTTGCGCTTGCTAACTATGCATGTGCATTGCTGCCCTTCACTCCAACTCCCCTTCCGACACCGCCCTCCCCTCCCCCCTCTTCTCCCCCCGATGATGACGGAGGACAGGAACAGGAACACGAACATGAGCACGGGCATGGACATGGGCACGGACATGGGCACGGGCATAGACATGGTCATAATAGGCACAGGCATGGGGGGCACCATGAACCCTCACCCTCACCTGCAGAAGATAACTGTTGTAGATGGTTGACCCAGCTGGATAATGAGTGTGTGTGTGAGTTGCTGGTGCACCTGCCTACATTCCTCCTTAAGCCTACACATGCCTACACTGTAGCTGTCGGGGAATTCTGTCGTGTTACCTACACGTGCGGAACTCCAATCAGGATAAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

18.82

Weight (kDa)

6.47

Isoelectric Point (pI)

58.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 346, 417
Acc36I ACCTGC 2 cut(s) 346, 417
AccB1I GGYRCC 1 cut(s) 315
AciI CCGC 3 cut(s) 94, 176, 486
AcsI RAATTY 1 cut(s) 461
AcvI CACGTG 1 cut(s) 483
AflII CTTAAG 1 cut(s) 425
AflIII ACRYGT 1 cut(s) 480
AluBI AGCT 3 cut(s) 41, 373, 452
AluI AGCT 3 cut(s) 41, 373, 452
Alw21I GWGCWC 2 cut(s) 246, 408
Alw44I GTGCAC 1 cut(s) 404
ApaLI GTGCAC 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 145
ApoI RAATTY 1 cut(s) 461
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 2 cut(s) 321, 327
BaeGI GKGCMC 5 cut(s) 60, 264, 276, 318, 408
BanI GGYRCC 1 cut(s) 315
BbrPI CACGTG 1 cut(s) 483
Bbv12I GWGCWC 2 cut(s) 246, 408
BbvI GCAGC 1 cut(s) 132
BccI CCATC 2 cut(s) 58, 354
BfmI CTRYAG 2 cut(s) 339, 447
BfrI CTTAAG 1 cut(s) 425
BfuAI ACCTGC 2 cut(s) 346, 417
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 145, 175
Bse3DI GCAATG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 140
BseSI GKGCMC 5 cut(s) 60, 264, 276, 318, 408
BseXI GCAGC 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 369
BshNI GGYRCC 1 cut(s) 315
BsiHKAI GWGCWC 2 cut(s) 246, 408
Bsp1286I GDGCHC 6 cut(s) 60, 246, 264, 276, 318, 408
BspACI CCGC 3 cut(s) 94, 176, 486
BspLI GGNNCC 1 cut(s) 317
BspMAI CTGCAG 1 cut(s) 343
BspMI ACCTGC 2 cut(s) 346, 417
BspT107I GGYRCC 1 cut(s) 315
BspTI CTTAAG 1 cut(s) 425
BsrDI GCAATG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 353, 448
Bst6I CTCTTC 1 cut(s) 199
BstAFI CTTAAG 1 cut(s) 425
BstBAI YACGTR 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 123
BstHHI GCGC 1 cut(s) 121
BstMWI GCNNNNNNNGC 2 cut(s) 131, 313
BstNSI RCATGY 2 cut(s) 138, 440
BstSFI CTRYAG 2 cut(s) 339, 447
BstSLI GKGCMC 5 cut(s) 60, 264, 276, 318, 408
BstV1I GCAGC 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 444
BveI ACCTGC 2 cut(s) 346, 417
Cac8I GCNNGC 1 cut(s) 123
CfoI GCGC 1 cut(s) 121
CseI GACGC 1 cut(s) 65
CviAII CATG 9 cut(s) 135, 239, 251, 257, 269, 287, 308, 320, 437
CviJI RGCY 4 cut(s) 41, 373, 430, 452
CviKI_1 RGCY 4 cut(s) 41, 373, 430, 452
Eam1104I CTCTTC 1 cut(s) 199
EarI CTCTTC 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 483
EcoRI GAATTC 1 cut(s) 461
EcoT22I ATGCAT 1 cut(s) 136
FaeI CATG 9 cut(s) 138, 242, 254, 260, 272, 290, 311, 323, 440
FatI CATG 9 cut(s) 134, 238, 250, 256, 268, 286, 307, 319, 436
FauI CCCGC 1 cut(s) 101
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 1 cut(s) 120
GluI GCNGC 1 cut(s) 146
GsaI CCCAGC 1 cut(s) 373
HgaI GACGC 1 cut(s) 65
HhaI GCGC 1 cut(s) 121
Hin1II CATG 9 cut(s) 138, 242, 254, 260, 272, 290, 311, 323, 440
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 2 cut(s) 13, 366
HindII GTYRAC 2 cut(s) 13, 366
HinfI GANTC 1 cut(s) 9
HphI GGTGA 2 cut(s) 321, 327
Hpy166II GTNNAC 3 cut(s) 13, 366, 406
Hpy188I TCNGA 2 cut(s) 171, 512
Hpy188III TCNNGA 1 cut(s) 499
Hpy8I GTNNAC 3 cut(s) 13, 366, 406
HpyAV CCTTC 2 cut(s) 160, 176
HpyCH4III ACNGT 2 cut(s) 353, 448
HpyCH4IV ACGT 1 cut(s) 482
HpyCH4V TGCA 4 cut(s) 134, 140, 341, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 131, 313
HpySE526I ACGT 1 cut(s) 482
Hsp92II CATG 9 cut(s) 138, 242, 254, 260, 272, 290, 311, 323, 440
HspAI GCGC 1 cut(s) 119
LpnPI CCDG 9 cut(s) 206, 212, 289, 351, 359, 383, 386, 422, 484
Lsp1109I GCAGC 1 cut(s) 132
MaeII ACGT 1 cut(s) 482
MaeIII GTNAC 1 cut(s) 472
MboII GAAGA 2 cut(s) 186, 356
MhlI GDGCHC 6 cut(s) 60, 246, 264, 276, 318, 408
MluCI AATT 2 cut(s) 113, 461
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 2 cut(s) 182, 194
Mph1103I ATGCAT 1 cut(s) 136
MseI TTAA 2 cut(s) 26, 426
MslI CAYNNNNRTG 6 cut(s) 237, 249, 255, 267, 285, 306
MspA1I CMGCKG 1 cut(s) 373
MspCI CTTAAG 1 cut(s) 425
MwoI GCNNNNNNNGC 2 cut(s) 131, 313
NlaIII CATG 9 cut(s) 138, 242, 254, 260, 272, 290, 311, 323, 440
NlaIV GGNNCC 1 cut(s) 317
NsiI ATGCAT 1 cut(s) 136
NspI RCATGY 2 cut(s) 138, 440
PaqCI CACCTGC 2 cut(s) 346, 417
PflFI GACNNNGTC 1 cut(s) 288
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 1 cut(s) 17
PmaCI CACGTG 1 cut(s) 483
PmlI CACGTG 1 cut(s) 483
PpsI GAGTC 1 cut(s) 17
Ppu21I YACGTR 1 cut(s) 483
PspCI CACGTG 1 cut(s) 483
PspFI CCCAGC 1 cut(s) 369
PspN4I GGNNCC 1 cut(s) 317
PstI CTGCAG 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 288
PvuII CAGCTG 1 cut(s) 373
RseI CAYNNNNRTG 6 cut(s) 237, 249, 255, 267, 285, 306
SaqAI TTAA 2 cut(s) 26, 426
SatI GCNGC 1 cut(s) 146
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 6 cut(s) 60, 246, 264, 276, 318, 408
SfcI CTRYAG 2 cut(s) 339, 447
SmiMI CAYNNNNRTG 6 cut(s) 237, 249, 255, 267, 285, 306
SmlI CTYRAG 1 cut(s) 425
SmoI CTYRAG 1 cut(s) 425
Sse9I AATT 2 cut(s) 113, 461
SsiI CCGC 3 cut(s) 94, 176, 486
TaaI ACNGT 2 cut(s) 353, 448
TaiI ACGT 1 cut(s) 485
TasI AATT 2 cut(s) 113, 461
Tru1I TTAA 2 cut(s) 26, 426
Tru9I TTAA 2 cut(s) 26, 426
TscAI CASTG 1 cut(s) 451
TseI GCWGC 1 cut(s) 145
TspDTI ATGAA 1 cut(s) 336
TspGWI ACGGA 2 cut(s) 228, 279
TspRI CASTG 1 cut(s) 451
Tth111I GACNNNGTC 1 cut(s) 288
Vha464I CTTAAG 1 cut(s) 425
VneI GTGCAC 1 cut(s) 404
XapI RAATTY 1 cut(s) 461
XceI RCATGY 2 cut(s) 138, 440
Zsp2I ATGCAT 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.