RchiOBHm_Chr6g0291441

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017945
Physical Location & Seq
Reverse (-)
54591595 .. 54592645
1051 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26149

Sequence Viewer

Length: 588 bp
ATGATGGAGAGAGTCAAGAAGATTCTTACCTTGTTTGCAGCAACCCTGCTATTGCTGCCCATCATGGAGGCGCAGCATTATCCTCCTCCCCGCTCATTTTGTGCATCCCAATTCGCACTTGCTAGCTACGCGTGTTCACTGCTGCCGTATACTCCAATGCCAACTCCACAACCTCCTGCCCCTTCACCTCCTGATGACGACGACGACGACAACGATGATGACGACGACGATGATGGTGGTGGTGGTGGTGGTGATGACGGTCGTGATGGTGGTGGTGATGGCGGTCGTGATGGTGGTGGTGATCGACCAGAGCATGGTAGCGGCCACGGTCACGGCCACCACCACGGACATGGGCACAATCGCAAACAACAACGTCGCCATAGACACAGGCATGGGCACCACCATAGGTCAGAAACACCACCGTCACCCCAAGAAGAAAATTGCTGCAAATGGTTGAGCCAGCTTGATAACCAGTGTGTCTGTGAGTTGCTTCTGCGCTTGCCCACCTTCCTCCTTAAGCCTGCACACACTTACTCTCTATTTGTTGGATCGTCCTGCAACGTTAAATACACTTGCGCACACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.36

Weight (kDa)

5.97

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 577
AccB1I GGYRCC 1 cut(s) 396
AccB7I CCANNNNNTGG 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 93
AccI GTMKAC 1 cut(s) 149
AccII CGCG 1 cut(s) 131
AciI CCGC 3 cut(s) 91, 282, 321
AclI AACGTT 1 cut(s) 561
AclWI GGATC 1 cut(s) 556
AcoI YGGCCR 2 cut(s) 322, 334
AfiI CCNNNNNNNGG 1 cut(s) 314
AflII CTTAAG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 129
AluBI AGCT 2 cut(s) 126, 463
AluI AGCT 2 cut(s) 126, 463
AlwI GGATC 1 cut(s) 556
AoxI GGCC 2 cut(s) 322, 334
ApeKI GCWGC 5 cut(s) 38, 55, 73, 142, 444
AspLEI GCGC 3 cut(s) 73, 498, 578
AsuHPI GGTGA 5 cut(s) 177, 263, 287, 311, 417
AsuNHI GCTAGC 1 cut(s) 122
BaeGI GKGCMC 2 cut(s) 357, 399
BanI GGYRCC 1 cut(s) 396
BbvI GCAGC 5 cut(s) 42, 50, 85, 129, 431
BccI CCATC 5 cut(s) 68, 227, 260, 272, 284
BceAI ACGGC 2 cut(s) 130, 349
BfaI CTAG 1 cut(s) 123
BfrI CTTAAG 1 cut(s) 515
BisI GCNGC 6 cut(s) 39, 56, 74, 143, 322, 445
BlsI GCNGC 6 cut(s) 40, 57, 75, 144, 323, 446
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 325, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 1 cut(s) 472
BseDI CCNNGG 2 cut(s) 325, 343
BseGI GGATG 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 75
BseSI GKGCMC 2 cut(s) 357, 399
BseXI GCAGC 5 cut(s) 42, 50, 85, 129, 431
BsgI GTGCAG 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 131
Bsh1285I CGRYCG 2 cut(s) 262, 286
BshFI GGCC 2 cut(s) 324, 336
BshNI GGYRCC 1 cut(s) 396
BsiEI CGRYCG 2 cut(s) 262, 286
BslI CCNNNNNNNGG 1 cut(s) 314
BsnI GGCC 2 cut(s) 324, 336
Bsp1286I GDGCHC 2 cut(s) 357, 399
Bsp143I GATC 2 cut(s) 301, 548
BspACI CCGC 3 cut(s) 91, 282, 321
BspANI GGCC 2 cut(s) 324, 336
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 398
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 1 cut(s) 556
BspT107I GGYRCC 1 cut(s) 396
BspTI CTTAAG 1 cut(s) 515
BsrBI CCGCTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 2 cut(s) 325, 343
BssMI GATC 2 cut(s) 301, 548
BssNAI GTATAC 1 cut(s) 150
Bst1107I GTATAC 1 cut(s) 150
Bst4CI ACNGT 3 cut(s) 260, 329, 423
BstAFI CTTAAG 1 cut(s) 515
BstC8I GCNNGC 4 cut(s) 124, 461, 500, 522
BstDSI CCRYGG 2 cut(s) 325, 343
BstF5I GGATG 1 cut(s) 104
BstFNI CGCG 1 cut(s) 131
BstHHI GCGC 3 cut(s) 73, 498, 578
BstKTI GATC 2 cut(s) 304, 551
BstMBI GATC 2 cut(s) 301, 548
BstMCI CGRYCG 2 cut(s) 262, 286
BstMWI GCNNNNNNNGC 2 cut(s) 55, 128
BstSLI GKGCMC 2 cut(s) 357, 399
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 5 cut(s) 42, 50, 85, 129, 431
BstXI CCANNNNNNTGG 1 cut(s) 350
BstZ17I GTATAC 1 cut(s) 150
BsuRI GGCC 2 cut(s) 324, 336
BtgI CCRYGG 2 cut(s) 325, 343
BtsCI GGATG 1 cut(s) 104
BtsI GCAGTG 1 cut(s) 137
BtsIMutI CAGTG 2 cut(s) 137, 479
Cac8I GCNNGC 4 cut(s) 124, 461, 500, 522
CfoI GCGC 3 cut(s) 73, 498, 578
CviAII CATG 5 cut(s) 64, 314, 350, 392, 585
CviJI RGCY 6 cut(s) 126, 324, 336, 459, 463, 520
CviKI_1 RGCY 6 cut(s) 126, 324, 336, 459, 463, 520
DpnI GATC 2 cut(s) 303, 550
DpnII GATC 2 cut(s) 301, 548
EaeI YGGCCR 2 cut(s) 322, 334
FaeI CATG 5 cut(s) 67, 317, 353, 395, 588
FaiI YATR 8 cut(s) 65, 150, 315, 351, 381, 393, 405, 586
FatI CATG 5 cut(s) 63, 313, 349, 391, 584
FauI CCCGC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 6 cut(s) 39, 56, 74, 143, 322, 445
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 6 cut(s) 39, 56, 74, 143, 322, 445
FspBI CTAG 1 cut(s) 123
FspI TGCGCA 1 cut(s) 577
GlaI GCGC 3 cut(s) 72, 497, 577
GluI GCNGC 6 cut(s) 39, 56, 74, 143, 322, 445
HaeIII GGCC 2 cut(s) 324, 336
HhaI GCGC 3 cut(s) 73, 498, 578
Hin1II CATG 5 cut(s) 67, 317, 353, 395, 588
Hin6I GCGC 3 cut(s) 71, 496, 576
HinP1I GCGC 3 cut(s) 71, 496, 576
HinfI GANTC 2 cut(s) 12, 22
HphI GGTGA 5 cut(s) 177, 263, 287, 311, 417
Hpy166II GTNNAC 2 cut(s) 137, 150
Hpy188I TCNGA 1 cut(s) 412
Hpy188III TCNNGA 4 cut(s) 16, 191, 263, 287
Hpy8I GTNNAC 2 cut(s) 137, 150
Hpy99I CGWCG 6 cut(s) 203, 206, 209, 227, 230, 378
HpyAV CCTTC 2 cut(s) 192, 517
HpyCH4III ACNGT 3 cut(s) 260, 329, 423
HpyCH4IV ACGT 2 cut(s) 373, 561
HpyCH4V TGCA 5 cut(s) 38, 104, 447, 524, 558
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 128
HpySE526I ACGT 2 cut(s) 373, 561
Hsp92II CATG 5 cut(s) 67, 317, 353, 395, 588
HspAI GCGC 3 cut(s) 71, 496, 576
Kzo9I GATC 2 cut(s) 301, 548
LpnPI CCDG 9 cut(s) 59, 189, 204, 321, 373, 473, 485, 534, 568
Lsp1109I GCAGC 5 cut(s) 42, 50, 85, 129, 431
LweI GCATC 1 cut(s) 113
MaeI CTAG 1 cut(s) 123
MaeII ACGT 2 cut(s) 373, 561
MaeIII GTNAC 2 cut(s) 329, 423
MalI GATC 2 cut(s) 303, 550
MbiI CCGCTC 1 cut(s) 93
MboI GATC 2 cut(s) 301, 548
MboII GAAGA 2 cut(s) 31, 446
MhlI GDGCHC 2 cut(s) 357, 399
MluCI AATT 2 cut(s) 110, 439
MluI ACGCGT 1 cut(s) 129
MlyI GAGTC 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 526
MnlI CCTC 6 cut(s) 61, 93, 96, 183, 198, 521
MseI TTAA 2 cut(s) 516, 564
MslI CAYNNNNRTG 3 cut(s) 348, 390, 583
MspCI CTTAAG 1 cut(s) 515
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 2 cut(s) 55, 128
NdeII GATC 2 cut(s) 301, 548
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 5 cut(s) 67, 317, 353, 395, 588
NlaIV GGNNCC 1 cut(s) 398
NmuCI GTSAC 2 cut(s) 329, 423
NsbI TGCGCA 1 cut(s) 577
PcsI WCGNNNNNNNCGW 3 cut(s) 204, 210, 219
PfeI GAWTC 1 cut(s) 22
PflMI CCANNNNNTGG 1 cut(s) 314
PkrI GCNGC 6 cut(s) 40, 57, 75, 144, 323, 446
PleI GAGTC 1 cut(s) 20
PpsI GAGTC 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 561
PspN4I GGNNCC 1 cut(s) 398
RseI CAYNNNNRTG 3 cut(s) 348, 390, 583
SaqAI TTAA 2 cut(s) 516, 564
SatI GCNGC 6 cut(s) 39, 56, 74, 143, 322, 445
Sau3AI GATC 2 cut(s) 301, 548
SchI GAGTC 1 cut(s) 21
SduI GDGCHC 2 cut(s) 357, 399
SetI ASST 9 cut(s) 32, 128, 175, 190, 376, 410, 465, 509, 564
SfaNI GCATC 1 cut(s) 113
SmiMI CAYNNNNRTG 3 cut(s) 348, 390, 583
SmlI CTYRAG 1 cut(s) 515
SmoI CTYRAG 1 cut(s) 515
Sse9I AATT 2 cut(s) 110, 439
SsiI CCGC 3 cut(s) 91, 282, 321
SspMI CTAG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 260, 329, 423
TaiI ACGT 2 cut(s) 376, 564
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 110, 439
TauI GCSGC 1 cut(s) 324
TfiI GAWTC 1 cut(s) 22
Tru1I TTAA 2 cut(s) 516, 564
Tru9I TTAA 2 cut(s) 516, 564
TscAI CASTG 2 cut(s) 144, 479
TseFI GTSAC 2 cut(s) 329, 423
TseI GCWGC 5 cut(s) 38, 55, 73, 142, 444
Tsp45I GTSAC 2 cut(s) 329, 423
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 144, 479
Van91I CCANNNNNTGG 1 cut(s) 314
Vha464I CTTAAG 1 cut(s) 515
XcmI CCANNNNNNNNNTGG 1 cut(s) 347
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.