MD03G1268100.v1.1

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0017945
Physical Location & Seq
Reverse (-)
35297395 .. 35298273
879 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1268100.v1.1.491

Sequence Viewer

Length: 438 bp
ATGAAGGCGCAGCATCTATTCCCGCCTGCGCGCCCCCTCTGTGCATCGCAATTTGCACTTGCTAACTATGCTTGCTCGATGCTACCCTTTACTCCGACACCCCCACCAACACCCCCCTCCCCTCCCCCTTCACCCCCCGATGATGATGAAGGACAGGAAGAGGACCATGGTCAGGACCATGGACACGGTCACGGACATGGACACAATCACGGACATAGACATGTCCATCACAGGCACAGGCATCATGATCATCAAGCCATTCCTGCCGAAGATAATTGTTGTAAGTGGTTGAACCAGCTGGACAATGAATGTGTGTGTGAGCTGCTGGTTCACCTGCCCAACTTCCTCATTAGGCCTGCTCATGCGTACTCCGTGGCTGTCGGAGAAACTTGCACCGTTAGCTACACTTGCGGAACTCCGATCAGGATAAAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

146

Amino Acids

16.1

Weight (kDa)

6.28

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 342
Acc36I ACCTGC 1 cut(s) 342
AccII CGCG 1 cut(s) 31
AciI CCGC 2 cut(s) 23, 411
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 1 cut(s) 172
AflIII ACRYGT 1 cut(s) 220
AgsI TTSAA 1 cut(s) 292
AluBI AGCT 3 cut(s) 298, 322, 402
AluI AGCT 3 cut(s) 298, 322, 402
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 10, 322
AspLEI GCGC 3 cut(s) 10, 31, 33
AspS9I GGNCC 2 cut(s) 163, 175
AsuHPI GGTGA 2 cut(s) 123, 323
AvaII GGWCC 2 cut(s) 163, 175
BbvI GCAGC 2 cut(s) 22, 309
BccI CCATC 1 cut(s) 234
BclI TGATCA 1 cut(s) 247
BfuAI ACCTGC 1 cut(s) 342
BisI GCNGC 2 cut(s) 11, 323
BlsI GCNGC 2 cut(s) 12, 324
Bme18I GGWCC 2 cut(s) 163, 175
BmgT120I GGNCC 2 cut(s) 163, 175
BmsI GCATC 4 cut(s) 22, 53, 69, 250
BoxI GACNNNNGTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 166, 178, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 172
BseDI CCNNGG 3 cut(s) 166, 178, 372
BseLI CCNNNNNNNGG 1 cut(s) 172
BsePI GCGCGC 1 cut(s) 29
BseXI GCAGC 2 cut(s) 22, 309
Bsh1236I CGCG 1 cut(s) 31
BshFI GGCC 1 cut(s) 355
BslI CCNNNNNNNGG 1 cut(s) 172
BsnI GGCC 1 cut(s) 355
Bsp143I GATC 2 cut(s) 247, 420
Bsp19I CCATGG 2 cut(s) 166, 178
BspACI CCGC 2 cut(s) 23, 411
BspANI GGCC 1 cut(s) 355
BspFNI CGCG 1 cut(s) 31
BspHI TCATGA 1 cut(s) 244
BspMI ACCTGC 1 cut(s) 342
BssECI CCNNGG 3 cut(s) 166, 178, 372
BssHII GCGCGC 1 cut(s) 29
BssMI GATC 2 cut(s) 247, 420
BssT1I CCWWGG 2 cut(s) 166, 178
Bst4CI ACNGT 2 cut(s) 188, 397
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 4 cut(s) 27, 31, 73, 357
BstDSI CCRYGG 3 cut(s) 166, 178, 372
BstFNI CGCG 1 cut(s) 31
BstHHI GCGC 3 cut(s) 10, 31, 33
BstKTI GATC 2 cut(s) 250, 423
BstMBI GATC 2 cut(s) 247, 420
BstMWI GCNNNNNNNGC 4 cut(s) 68, 263, 399, 408
BstNSI RCATGY 1 cut(s) 224
BstPAI GACNNNNGTC 1 cut(s) 168
BstUI CGCG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 22, 309
BsuRI GGCC 1 cut(s) 355
BtgI CCRYGG 3 cut(s) 166, 178, 372
BtgZI GCGATG 1 cut(s) 30
BveI ACCTGC 1 cut(s) 342
Cac8I GCNNGC 4 cut(s) 27, 31, 73, 357
CciI TCATGA 1 cut(s) 244
CfoI GCGC 3 cut(s) 10, 31, 33
Cfr13I GGNCC 2 cut(s) 163, 175
Csp6I GTAC 1 cut(s) 367
CviAII CATG 6 cut(s) 167, 179, 197, 221, 245, 362
CviJI RGCY 6 cut(s) 257, 298, 322, 355, 377, 402
CviKI_1 RGCY 6 cut(s) 257, 298, 322, 355, 377, 402
CviQI GTAC 1 cut(s) 367
DpnI GATC 2 cut(s) 249, 422
DpnII GATC 2 cut(s) 247, 420
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 2 cut(s) 166, 178
Eco147I AGGCCT 1 cut(s) 355
Eco47I GGWCC 2 cut(s) 163, 175
EcoT14I CCWWGG 2 cut(s) 166, 178
ErhI CCWWGG 2 cut(s) 166, 178
FaeI CATG 6 cut(s) 170, 182, 200, 224, 248, 365
FaiI YATR 9 cut(s) 69, 168, 180, 198, 216, 222, 246, 363, 436
FatI CATG 6 cut(s) 166, 178, 196, 220, 244, 361
FauI CCCGC 1 cut(s) 30
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 11, 323
Fsp4HI GCNGC 2 cut(s) 11, 323
GlaI GCGC 3 cut(s) 9, 30, 32
GluI GCNGC 2 cut(s) 11, 323
HaeIII GGCC 1 cut(s) 355
HhaI GCGC 3 cut(s) 10, 31, 33
Hin1II CATG 6 cut(s) 170, 182, 200, 224, 248, 365
Hin6I GCGC 3 cut(s) 8, 29, 31
HinP1I GCGC 3 cut(s) 8, 29, 31
HphI GGTGA 2 cut(s) 123, 323
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 3 cut(s) 96, 383, 420
Hpy188III TCNNGA 3 cut(s) 173, 245, 424
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 2 cut(s) 138, 143
HpyCH4III ACNGT 2 cut(s) 188, 397
HpyCH4V TGCA 3 cut(s) 44, 56, 393
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 263, 399, 408
Hsp92II CATG 6 cut(s) 170, 182, 200, 224, 248, 365
HspAI GCGC 3 cut(s) 8, 29, 31
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 2 cut(s) 247, 420
Lsp1109I GCAGC 2 cut(s) 22, 309
LweI GCATC 4 cut(s) 22, 53, 69, 250
MaeIII GTNAC 1 cut(s) 188
MalI GATC 2 cut(s) 249, 422
MboI GATC 2 cut(s) 247, 420
MboII GAAGA 2 cut(s) 170, 281
MluCI AATT 2 cut(s) 50, 274
MmeI TCCRAC 2 cut(s) 119, 361
MnlI CCTC 5 cut(s) 47, 127, 132, 154, 356
MslI CAYNNNNRTG 2 cut(s) 195, 219
MspA1I CMGCKG 1 cut(s) 298
MvnI CGCG 1 cut(s) 31
MwoI GCNNNNNNNGC 4 cut(s) 68, 263, 399, 408
NcoI CCATGG 2 cut(s) 166, 178
NdeII GATC 2 cut(s) 247, 420
NlaIII CATG 6 cut(s) 170, 182, 200, 224, 248, 365
NmuCI GTSAC 1 cut(s) 188
NspI RCATGY 1 cut(s) 224
PagI TCATGA 1 cut(s) 244
PaqCI CACCTGC 1 cut(s) 342
PauI GCGCGC 1 cut(s) 29
PceI AGGCCT 1 cut(s) 355
PciI ACATGT 1 cut(s) 220
PflFI GACNNNGTC 1 cut(s) 186
PkrI GCNGC 2 cut(s) 12, 324
PscI ACATGT 1 cut(s) 220
PshAI GACNNNNGTC 1 cut(s) 168
PspPI GGNCC 2 cut(s) 163, 175
PsyI GACNNNGTC 1 cut(s) 186
PteI GCGCGC 1 cut(s) 29
PvuII CAGCTG 1 cut(s) 298
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
RseI CAYNNNNRTG 2 cut(s) 195, 219
SatI GCNGC 2 cut(s) 11, 323
Sau3AI GATC 2 cut(s) 247, 420
Sau96I GGNCC 2 cut(s) 163, 175
SetI ASST 4 cut(s) 300, 324, 336, 404
SfaNI GCATC 4 cut(s) 22, 53, 69, 250
SinI GGWCC 2 cut(s) 163, 175
SmiMI CAYNNNNRTG 2 cut(s) 195, 219
Sse9I AATT 2 cut(s) 50, 274
SseBI AGGCCT 1 cut(s) 355
SsiI CCGC 2 cut(s) 23, 411
StuI AGGCCT 1 cut(s) 355
StyI CCWWGG 2 cut(s) 166, 178
TaaI ACNGT 2 cut(s) 188, 397
TaqI TCGA 1 cut(s) 77
TasI AATT 2 cut(s) 50, 274
TseFI GTSAC 1 cut(s) 188
TseI GCWGC 2 cut(s) 10, 322
Tsp45I GTSAC 1 cut(s) 188
TspDTI ATGAA 3 cut(s) 17, 162, 321
TspGWI ACGGA 3 cut(s) 207, 225, 361
Tth111I GACNNNGTC 1 cut(s) 186
VpaK11BI GGWCC 2 cut(s) 163, 175
XceI RCATGY 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.