Rroxscaffold_7G00176050

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017945
Physical Location & Seq
Forward (+)
15516743 .. 15523392
6650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176050.1

Sequence Viewer

Length: 864 bp
ATGCAGTTGCAAAGGGAAGAGGTTAAGAACATAGAGGTGTTGGCTGGGAAAAATAAAGAAGAGGTGCAGAGAATGGTGGTAATTAAGAAGGCTTTGTTTTGCAACCAGATGAATGGTGACAGGTTTGGCCTAAAACGCTTAAAATACAAGCAGAAGATGATGGAGGGAGTCAAGAAGATTCTTACCTTGTTTGCAGCGACCCTGCTATTGCTGCCCATCATGGAGGCGCAGCATTATCCTCCTCCCCGCCCATTTTGTGCATCCCAATTCGCACTTGCTAGCTACGCGTGTTCACTGCTGCCGTATACTCCAATGCCAACTCCACAACCTCCTTCCCCTCCTGCCCCTTCACCTCCTGATGACGACGATGACAACGACGACGGTGGTGGTGGTGGTGATGGTGATGGCGATCGTGATGGTGATGGTGATGACGGTCGTGATGGTGGTGGTGATGGCGGTCGTGATGGTGATGGTGATGGCGGTCGTGATGGTGGTGGTGATCGACCAGAGCATGGTAGCGGCCACGGCCATAGTCACAGCCACGGCCACCACCACGGACATGGGCGCAATCGCAAACAACAACGTCGCCATAGACACAGGCAAGGGCACGGGCACGGGCACCACCATAGGTCAGAAACACCACTGTCACCCCAAGAAGATAATTGCTGCAAATGGTTGAGCCAGCTTGATAACCAGTGTGTCTGTGAGTTGCTTCTGCGCTTGCCCACCTTCCTCCTTAAGCCTGCACACACTTACTCTATCGGTCATGCATGCAACGAAATAAAGAGAAACATGGATTCTCTCTGCAACCTTGAAAAGGAGAAAGAAAAAGAAGAAGAAGCTTTACTAATCGAAAGAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

287

Amino Acids

31.82

Weight (kDa)

6.25

Isoelectric Point (pI)

59.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 618
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 1 cut(s) 305
AccII CGCG 1 cut(s) 287
AciI CCGC 4 cut(s) 247, 456, 480, 519
AcoI YGGCCR 3 cut(s) 520, 526, 544
AfiI CCNNNNNNNGG 2 cut(s) 512, 817
AflII CTTAAG 1 cut(s) 737
AflIII ACRYGT 1 cut(s) 285
AgsI TTSAA 1 cut(s) 815
AluBI AGCT 3 cut(s) 282, 685, 842
AluI AGCT 3 cut(s) 282, 685, 842
AoxI GGCC 4 cut(s) 127, 520, 526, 544
ApeKI GCWGC 5 cut(s) 194, 211, 229, 298, 666
AspLEI GCGC 3 cut(s) 229, 567, 720
AsuNHI GCTAGC 1 cut(s) 278
BaeGI GKGCMC 3 cut(s) 609, 615, 621
BanI GGYRCC 1 cut(s) 618
BarI GAAGNNNNNNTAC 2 cut(s) 828, 860
BbvI GCAGC 5 cut(s) 198, 206, 241, 285, 653
BceAI ACGGC 3 cut(s) 286, 541, 559
BfaI CTAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 737
BisI GCNGC 6 cut(s) 195, 212, 230, 299, 520, 667
BlsI GCNGC 6 cut(s) 196, 213, 231, 300, 521, 668
BmiI GGNNCC 1 cut(s) 620
BmsI GCATC 1 cut(s) 269
BmtI GCTAGC 1 cut(s) 282
BsaBI GATNNNNATC 1 cut(s) 408
BsaJI CCNNGG 3 cut(s) 523, 541, 553
Bsc4I CCNNNNNNNGG 2 cut(s) 512, 817
Bse1I ACTGG 1 cut(s) 694
Bse8I GATNNNNATC 1 cut(s) 408
BseDI CCNNGG 3 cut(s) 523, 541, 553
BseGI GGATG 1 cut(s) 260
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 2 cut(s) 512, 817
BseNI ACTGG 1 cut(s) 694
BseRI GAGGAG 1 cut(s) 231
BseSI GKGCMC 3 cut(s) 609, 615, 621
BseXI GCAGC 5 cut(s) 198, 206, 241, 285, 653
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 2 cut(s) 86, 729
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 4 cut(s) 412, 436, 460, 484
BshFI GGCC 4 cut(s) 129, 522, 528, 546
BshNI GGYRCC 1 cut(s) 618
BsiEI CGRYCG 4 cut(s) 412, 436, 460, 484
BslI CCNNNNNNNGG 2 cut(s) 512, 817
BsnI GGCC 4 cut(s) 129, 522, 528, 546
Bsp1286I GDGCHC 3 cut(s) 609, 615, 621
Bsp143I GATC 2 cut(s) 409, 499
BspACI CCGC 4 cut(s) 247, 456, 480, 519
BspANI GGCC 4 cut(s) 129, 522, 528, 546
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 1 cut(s) 620
BspOI GCTAGC 1 cut(s) 282
BspT107I GGYRCC 1 cut(s) 618
BspTI CTTAAG 1 cut(s) 737
BsrI ACTGG 1 cut(s) 694
BssECI CCNNGG 3 cut(s) 523, 541, 553
BssMI GATC 2 cut(s) 409, 499
BssNAI GTATAC 1 cut(s) 306
Bst1107I GTATAC 1 cut(s) 306
Bst4CI ACNGT 3 cut(s) 383, 434, 645
Bst6I CTCTTC 2 cut(s) 12, 54
BstAFI CTTAAG 1 cut(s) 737
BstC8I GCNNGC 5 cut(s) 280, 683, 722, 744, 772
BstDSI CCRYGG 3 cut(s) 523, 541, 553
BstENI CCTNNNNNAGG 1 cut(s) 815
BstF5I GGATG 1 cut(s) 260
BstFNI CGCG 1 cut(s) 287
BstHHI GCGC 3 cut(s) 229, 567, 720
BstKTI GATC 2 cut(s) 412, 502
BstMBI GATC 2 cut(s) 409, 499
BstMCI CGRYCG 4 cut(s) 412, 436, 460, 484
BstMWI GCNNNNNNNGC 4 cut(s) 135, 211, 284, 525
BstNSI RCATGY 1 cut(s) 774
BstSLI GKGCMC 3 cut(s) 609, 615, 621
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 5 cut(s) 198, 206, 241, 285, 653
BstXI CCANNNNNNTGG 2 cut(s) 113, 560
BstZ17I GTATAC 1 cut(s) 306
BsuRI GGCC 4 cut(s) 129, 522, 528, 546
BtgI CCRYGG 3 cut(s) 523, 541, 553
BtsCI GGATG 1 cut(s) 260
BtsI GCAGTG 1 cut(s) 293
BtsIMutI CAGTG 3 cut(s) 293, 641, 701
Cac8I GCNNGC 5 cut(s) 280, 683, 722, 744, 772
CfoI GCGC 3 cut(s) 229, 567, 720
CviAII CATG 6 cut(s) 220, 512, 560, 767, 771, 793
DpnI GATC 2 cut(s) 411, 501
DpnII GATC 2 cut(s) 409, 499
EaeI YGGCCR 3 cut(s) 520, 526, 544
Eam1104I CTCTTC 2 cut(s) 12, 54
EarI CTCTTC 2 cut(s) 12, 54
EcoNI CCTNNNNNAGG 1 cut(s) 815
EcoT22I ATGCAT 1 cut(s) 772
FaeI CATG 6 cut(s) 223, 515, 563, 770, 774, 796
FatI CATG 6 cut(s) 219, 511, 559, 766, 770, 792
FauI CCCGC 1 cut(s) 254
FblI GTMKAC 1 cut(s) 305
Fnu4HI GCNGC 6 cut(s) 195, 212, 230, 299, 520, 667
FokI GGATG 1 cut(s) 247
Fsp4HI GCNGC 6 cut(s) 195, 212, 230, 299, 520, 667
FspBI CTAG 1 cut(s) 279
GlaI GCGC 3 cut(s) 228, 566, 719
GluI GCNGC 6 cut(s) 195, 212, 230, 299, 520, 667
GsaI CCCAGC 1 cut(s) 48
HaeIII GGCC 4 cut(s) 129, 522, 528, 546
HhaI GCGC 3 cut(s) 229, 567, 720
Hin1II CATG 6 cut(s) 223, 515, 563, 770, 774, 796
Hin6I GCGC 3 cut(s) 227, 565, 718
HinP1I GCGC 3 cut(s) 227, 565, 718
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 3 cut(s) 168, 178, 797
Hpy166II GTNNAC 2 cut(s) 293, 306
Hpy188I TCNGA 1 cut(s) 634
Hpy188III TCNNGA 6 cut(s) 172, 356, 413, 437, 461, 485
Hpy8I GTNNAC 2 cut(s) 293, 306
Hpy99I CGWCG 4 cut(s) 368, 380, 383, 588
HpyAV CCTTC 4 cut(s) 82, 342, 357, 739
HpyCH4III ACNGT 3 cut(s) 383, 434, 645
HpyCH4IV ACGT 1 cut(s) 583
HpyF10VI GCNNNNNNNGC 4 cut(s) 135, 211, 284, 525
HpySE526I ACGT 1 cut(s) 583
Hsp92II CATG 6 cut(s) 223, 515, 563, 770, 774, 796
HspAI GCGC 3 cut(s) 227, 565, 718
Kzo9I GATC 2 cut(s) 409, 499
Lsp1109I GCAGC 5 cut(s) 198, 206, 241, 285, 653
LweI GCATC 1 cut(s) 269
MaeI CTAG 1 cut(s) 279
MaeII ACGT 1 cut(s) 583
MaeIII GTNAC 3 cut(s) 116, 533, 645
MalI GATC 2 cut(s) 411, 501
MboI GATC 2 cut(s) 409, 499
MboII GAAGA 7 cut(s) 29, 71, 166, 187, 668, 845, 848
MhlI GDGCHC 3 cut(s) 609, 615, 621
MluCI AATT 3 cut(s) 81, 266, 661
MluI ACGCGT 1 cut(s) 285
MlyI GAGTC 1 cut(s) 177
Mph1103I ATGCAT 1 cut(s) 772
MseI TTAA 4 cut(s) 24, 84, 140, 738
MslI CAYNNNNRTG 2 cut(s) 35, 558
MspCI CTTAAG 1 cut(s) 737
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 4 cut(s) 135, 211, 284, 525
NdeII GATC 2 cut(s) 409, 499
NheI GCTAGC 1 cut(s) 278
NlaIII CATG 6 cut(s) 223, 515, 563, 770, 774, 796
NlaIV GGNNCC 1 cut(s) 620
NmuCI GTSAC 3 cut(s) 116, 533, 645
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 1 cut(s) 774
PaeI GCATGC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 2 cut(s) 178, 797
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 6 cut(s) 196, 213, 231, 300, 521, 668
Ple19I CGATCG 1 cut(s) 412
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspFI CCCAGC 1 cut(s) 44
PspN4I GGNNCC 1 cut(s) 620
PvuI CGATCG 1 cut(s) 412
RseI CAYNNNNRTG 2 cut(s) 35, 558
SaqAI TTAA 4 cut(s) 24, 84, 140, 738
SatI GCNGC 6 cut(s) 195, 212, 230, 299, 520, 667
Sau3AI GATC 2 cut(s) 409, 499
SchI GAGTC 1 cut(s) 177
SduI GDGCHC 3 cut(s) 609, 615, 621
SfaNI GCATC 1 cut(s) 269
SmiMI CAYNNNNRTG 2 cut(s) 35, 558
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 774
Sse9I AATT 3 cut(s) 81, 266, 661
SsiI CCGC 4 cut(s) 247, 456, 480, 519
SspMI CTAG 1 cut(s) 279
TaaI ACNGT 3 cut(s) 383, 434, 645
TaiI ACGT 1 cut(s) 586
TaqI TCGA 2 cut(s) 502, 852
TaqII GACCGA 1 cut(s) 752
TasI AATT 3 cut(s) 81, 266, 661
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 2 cut(s) 178, 797
Tru1I TTAA 4 cut(s) 24, 84, 140, 738
Tru9I TTAA 4 cut(s) 24, 84, 140, 738
TscAI CASTG 3 cut(s) 300, 648, 701
TseFI GTSAC 3 cut(s) 116, 533, 645
TseI GCWGC 5 cut(s) 194, 211, 229, 298, 666
Tsp45I GTSAC 3 cut(s) 116, 533, 645
TspDTI ATGAA 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 570
TspRI CASTG 3 cut(s) 300, 648, 701
Van91I CCANNNNNTGG 1 cut(s) 512
Vha464I CTTAAG 1 cut(s) 737
XagI CCTNNNNNAGG 1 cut(s) 815
XceI RCATGY 1 cut(s) 774
XcmI CCANNNNNNNNNTGG 1 cut(s) 557
XmiI GTMKAC 1 cut(s) 305
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.