FvH4_2g23841

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0017945
Physical Location & Seq
Reverse (-)
19488363 .. 19489214
852 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g23841.t1

Sequence Viewer

Length: 720 bp
ATGAAGAGAAAGAGTAAACCATTCCGAACCAAACTCATCATCCTCTTGATGATGGAGAATGTCAAGAAGATTCTTACCTTGTTTGCAGCAACCCTGCTATTGCTGCCCTACATGGAGGCGCAGCATTATGCTCCTCCCCGCCCGCTCTGTGCGTCCCAATTCGCGCTAGCTAGCTATGCATGTTCACTGCTGCCATATGGTCCAATGCCGCCTATTCCACAACCTCCTTCCCCTCCTTCCCCTTCACCCCCTGATGATGATGACGACGATGACGACGACGACGATGATGATGACGACGACGACAATGATGATGGTCGTGATGACGACGATGACAATGGTCGTGATGGTGGTGGTAATGACGGTGGTGGTGGTGGTGGTGGTGATGGTGCTGCTCGAGCAAACAGTCACGGCCACGGCCACAGCAACAGCCACAGCAACGGCCACGGCCATGGACACGGGCGCGAACACCACGGACATGGGCACAGTCGCAAACAACAGCGTCACCGTAGACACAAGCGCAGGCGCGGGCACCATCATAGGTCACAAAGATCCATGACACCCCAAGAAGATAATTGCTGCAAATGGTTGACCCAGCTTGATAACCAGTGTGTCTGTGAGCTGCTCCTGCGCTTGCCAACCTTCCTGCTTAAGCCTGCACACACTTACTCTGTTTATATTGGAACATCCTGCAACATCACATACACTTGCCCGCATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

26.48

Weight (kDa)

6.23

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 145
AccI GTMKAC 1 cut(s) 508
AccII CGCG 3 cut(s) 164, 462, 525
AciI CCGC 5 cut(s) 139, 143, 209, 525, 710
AclWI GGATC 1 cut(s) 543
AcoI YGGCCR 4 cut(s) 409, 415, 439, 445
AflII CTTAAG 1 cut(s) 647
AluBI AGCT 4 cut(s) 170, 174, 595, 619
AluI AGCT 4 cut(s) 170, 174, 595, 619
AlwI GGATC 1 cut(s) 543
Ama87I CYCGRG 1 cut(s) 393
AoxI GGCC 4 cut(s) 409, 415, 439, 445
ApeKI GCWGC 7 cut(s) 86, 103, 121, 190, 389, 576, 619
AspLEI GCGC 6 cut(s) 121, 166, 462, 519, 525, 630
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 237, 392, 494
AsuNHI GCTAGC 2 cut(s) 166, 170
AvaI CYCGRG 1 cut(s) 393
AvaII GGWCC 1 cut(s) 200
BaeGI GKGCMC 2 cut(s) 483, 531
BanI GGYRCC 1 cut(s) 528
BbvI GCAGC 7 cut(s) 90, 98, 133, 177, 376, 563, 606
BccI CCATC 5 cut(s) 46, 305, 338, 377, 540
BceAI ACGGC 4 cut(s) 424, 430, 454, 460
BfaI CTAG 2 cut(s) 167, 171
BfrI CTTAAG 1 cut(s) 647
BisI GCNGC 8 cut(s) 87, 104, 122, 191, 209, 390, 577, 620
BlsI GCNGC 8 cut(s) 88, 105, 123, 192, 210, 391, 578, 621
Bme18I GGWCC 1 cut(s) 200
BmeT110I CYCGRG 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 530
BmtI GCTAGC 2 cut(s) 170, 174
BoxI GACNNNNGTC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 412, 442, 448, 469
Bse1I ACTGG 1 cut(s) 604
BseDI CCNNGG 4 cut(s) 412, 442, 448, 469
BseGI GGATG 3 cut(s) 39, 683, 712
BseNI ACTGG 1 cut(s) 604
BseRI GAGGAG 1 cut(s) 123
BseSI GKGCMC 2 cut(s) 483, 531
BseXI GCAGC 7 cut(s) 90, 98, 133, 177, 376, 563, 606
BseYI CCCAGC 1 cut(s) 591
BsgI GTGCAG 1 cut(s) 639
Bsh1236I CGCG 3 cut(s) 164, 462, 525
BshFI GGCC 4 cut(s) 411, 417, 441, 447
BshNI GGYRCC 1 cut(s) 528
BsiHKCI CYCGRG 1 cut(s) 393
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 4 cut(s) 411, 417, 441, 447
BsoBI CYCGRG 1 cut(s) 393
Bsp1286I GDGCHC 2 cut(s) 483, 531
Bsp143I GATC 1 cut(s) 548
Bsp19I CCATGG 1 cut(s) 448
BspACI CCGC 5 cut(s) 139, 143, 209, 525, 710
BspANI GGCC 4 cut(s) 411, 417, 441, 447
BspFNI CGCG 3 cut(s) 164, 462, 525
BspLI GGNNCC 1 cut(s) 530
BspOI GCTAGC 2 cut(s) 170, 174
BspPI GGATC 1 cut(s) 543
BspT107I GGYRCC 1 cut(s) 528
BspTI CTTAAG 1 cut(s) 647
BsrBI CCGCTC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 604
BssECI CCNNGG 4 cut(s) 412, 442, 448, 469
BssMI GATC 1 cut(s) 548
BssT1I CCWWGG 1 cut(s) 448
Bst4CI ACNGT 4 cut(s) 362, 404, 485, 506
BstAFI CTTAAG 1 cut(s) 647
BstC8I GCNNGC 8 cut(s) 143, 168, 172, 521, 527, 632, 654, 710
BstDSI CCRYGG 4 cut(s) 412, 442, 448, 469
BstF5I GGATG 3 cut(s) 39, 683, 712
BstFNI CGCG 3 cut(s) 164, 462, 525
BstHHI GCGC 6 cut(s) 121, 166, 462, 519, 525, 630
BstKTI GATC 1 cut(s) 551
BstMBI GATC 1 cut(s) 548
BstMWI GCNNNNNNNGC 4 cut(s) 103, 176, 395, 625
BstNSI RCATGY 1 cut(s) 183
BstPAI GACNNNNGTC 1 cut(s) 336
BstSLI GKGCMC 2 cut(s) 483, 531
BstUI CGCG 3 cut(s) 164, 462, 525
BstV1I GCAGC 7 cut(s) 90, 98, 133, 177, 376, 563, 606
BstX2I RGATCY 1 cut(s) 548
BstXI CCANNNNNNTGG 2 cut(s) 449, 476
BstYI RGATCY 1 cut(s) 548
BsuRI GGCC 4 cut(s) 411, 417, 441, 447
BtgI CCRYGG 4 cut(s) 412, 442, 448, 469
BtsCI GGATG 3 cut(s) 39, 683, 712
BtsI GCAGTG 1 cut(s) 185
BtsIMutI CAGTG 2 cut(s) 185, 611
Cac8I GCNNGC 8 cut(s) 143, 168, 172, 521, 527, 632, 654, 710
CfoI GCGC 6 cut(s) 121, 166, 462, 519, 525, 630
Cfr13I GGNCC 1 cut(s) 200
CseI GACGC 2 cut(s) 141, 488
CviAII CATG 6 cut(s) 112, 180, 449, 476, 553, 717
DpnI GATC 1 cut(s) 550
DpnII GATC 1 cut(s) 548
EaeI YGGCCR 4 cut(s) 409, 415, 439, 445
Eco130I CCWWGG 1 cut(s) 448
Eco47I GGWCC 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 393
EcoT14I CCWWGG 1 cut(s) 448
EcoT22I ATGCAT 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 448
FaeI CATG 6 cut(s) 115, 183, 452, 479, 556, 720
FaqI GGGAC 1 cut(s) 139
FatI CATG 6 cut(s) 111, 179, 448, 475, 552, 716
FauI CCCGC 4 cut(s) 146, 150, 518, 717
FauNDI CATATG 1 cut(s) 196
FblI GTMKAC 1 cut(s) 508
Fnu4HI GCNGC 8 cut(s) 87, 104, 122, 191, 209, 390, 577, 620
FokI GGATG 3 cut(s) 26, 670, 699
Fsp4HI GCNGC 8 cut(s) 87, 104, 122, 191, 209, 390, 577, 620
FspBI CTAG 2 cut(s) 167, 171
GlaI GCGC 6 cut(s) 120, 165, 461, 518, 524, 629
GluI GCNGC 8 cut(s) 87, 104, 122, 191, 209, 390, 577, 620
GsaI CCCAGC 1 cut(s) 595
HaeIII GGCC 4 cut(s) 411, 417, 441, 447
HgaI GACGC 2 cut(s) 141, 488
HhaI GCGC 6 cut(s) 121, 166, 462, 519, 525, 630
Hin1II CATG 6 cut(s) 115, 183, 452, 479, 556, 720
Hin6I GCGC 6 cut(s) 119, 164, 460, 517, 523, 628
HinP1I GCGC 6 cut(s) 119, 164, 460, 517, 523, 628
HincII GTYRAC 1 cut(s) 588
HindII GTYRAC 1 cut(s) 588
HinfI GANTC 1 cut(s) 70
HphI GGTGA 3 cut(s) 237, 392, 494
Hpy166II GTNNAC 4 cut(s) 17, 185, 509, 588
Hpy188I TCNGA 1 cut(s) 26
Hpy188III TCNNGA 4 cut(s) 46, 64, 317, 341
Hpy8I GTNNAC 4 cut(s) 17, 185, 509, 588
Hpy99I CGWCG 7 cut(s) 269, 278, 281, 284, 299, 302, 329
HpyAV CCTTC 4 cut(s) 237, 246, 252, 649
HpyCH4III ACNGT 4 cut(s) 362, 404, 485, 506
HpyCH4V TGCA 5 cut(s) 86, 179, 579, 656, 690
HpyF10VI GCNNNNNNNGC 4 cut(s) 103, 176, 395, 625
Hsp92II CATG 6 cut(s) 115, 183, 452, 479, 556, 720
HspAI GCGC 6 cut(s) 119, 164, 460, 517, 523, 628
Kzo9I GATC 1 cut(s) 548
LmnI GCTCC 2 cut(s) 136, 627
LpnPI CCDG 9 cut(s) 107, 264, 505, 605, 617, 638, 656, 666, 700
Lsp1109I GCAGC 7 cut(s) 90, 98, 133, 177, 376, 563, 606
MaeI CTAG 2 cut(s) 167, 171
MaeIII GTNAC 3 cut(s) 404, 500, 540
MalI GATC 1 cut(s) 550
MbiI CCGCTC 1 cut(s) 145
MboI GATC 1 cut(s) 548
MboII GAAGA 3 cut(s) 16, 79, 578
MflI RGATCY 1 cut(s) 548
MhlI GDGCHC 2 cut(s) 483, 531
MluCI AATT 2 cut(s) 158, 571
MnlI CCTC 5 cut(s) 53, 109, 144, 234, 243
Mph1103I ATGCAT 1 cut(s) 181
MseI TTAA 1 cut(s) 648
MslI CAYNNNNRTG 2 cut(s) 447, 474
MspCI CTTAAG 1 cut(s) 647
MvnI CGCG 3 cut(s) 164, 462, 525
MwoI GCNNNNNNNGC 4 cut(s) 103, 176, 395, 625
NcoI CCATGG 1 cut(s) 448
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 548
NheI GCTAGC 2 cut(s) 166, 170
NlaIII CATG 6 cut(s) 115, 183, 452, 479, 556, 720
NlaIV GGNNCC 1 cut(s) 530
NmuCI GTSAC 3 cut(s) 404, 500, 540
NsiI ATGCAT 1 cut(s) 181
NspI RCATGY 1 cut(s) 183
PaeR7I CTCGAG 1 cut(s) 393
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 273, 279
PfeI GAWTC 1 cut(s) 70
PkrI GCNGC 8 cut(s) 88, 105, 123, 192, 210, 391, 578, 621
PshAI GACNNNNGTC 1 cut(s) 336
PspFI CCCAGC 1 cut(s) 591
PspN4I GGNNCC 1 cut(s) 530
PspPI GGNCC 1 cut(s) 200
PspXI VCTCGAGB 1 cut(s) 393
PsuI RGATCY 1 cut(s) 548
RseI CAYNNNNRTG 2 cut(s) 447, 474
SaqAI TTAA 1 cut(s) 648
SatI GCNGC 8 cut(s) 87, 104, 122, 191, 209, 390, 577, 620
Sau3AI GATC 1 cut(s) 548
Sau96I GGNCC 1 cut(s) 200
SduI GDGCHC 2 cut(s) 483, 531
SetI ASST 8 cut(s) 80, 172, 176, 226, 542, 597, 621, 641
Sfr274I CTCGAG 1 cut(s) 393
SinI GGWCC 1 cut(s) 200
SlaI CTCGAG 1 cut(s) 393
SmiMI CAYNNNNRTG 2 cut(s) 447, 474
SmlI CTYRAG 2 cut(s) 393, 647
SmoI CTYRAG 2 cut(s) 393, 647
Sse9I AATT 2 cut(s) 158, 571
SsiI CCGC 5 cut(s) 139, 143, 209, 525, 710
SspMI CTAG 2 cut(s) 167, 171
StyI CCWWGG 1 cut(s) 448
TaaI ACNGT 4 cut(s) 362, 404, 485, 506
TaqI TCGA 1 cut(s) 394
TasI AATT 2 cut(s) 158, 571
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 648
Tru9I TTAA 1 cut(s) 648
TscAI CASTG 2 cut(s) 192, 611
TseFI GTSAC 3 cut(s) 404, 500, 540
TseI GCWGC 7 cut(s) 86, 103, 121, 190, 389, 576, 619
Tsp45I GTSAC 3 cut(s) 404, 500, 540
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 192, 611
Vha464I CTTAAG 1 cut(s) 647
VpaK11BI GGWCC 1 cut(s) 200
XceI RCATGY 1 cut(s) 183
XhoI CTCGAG 1 cut(s) 393
XmiI GTMKAC 1 cut(s) 508
XspI CTAG 2 cut(s) 167, 171
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.