RLG00000012114

Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0017945
Physical Location & Seq
Forward (+)
15412897 .. 15413383
487 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012114

Sequence Viewer

Length: 363 bp
ATGGAGAGAGTCAAGAAGATTCTTACCTTGTTTGCAGCAACCCTGCTATTGCTGCCCATCATGGAGGCGCAGCATTATCCTCCTCCCCGCCCATTTTGTGCATCCCAATTCGCACTTGCTAGCTACGCGTGTTCACTGCTGCCGTATACTCCAATGCCAACTCCACAACCTCCTTCCCCGCCTATCGACCGGAGCATGGTAGCGGCCACGGCCATGGTCGCAGCCACGGCCACCACCACGGACATGGGCACAATCGCAAACAACAACATCGCCATAGGCACAGGCATGGGCACGGACATGGGCACCACCATAGGTCAGAAACACCGCTGTCACCCCAAGAAGATAATTGCTGCAAATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.71

Weight (kDa)

9.22

Isoelectric Point (pI)

48.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017945)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63095
fragaria_vesca FvH4_2g23841
malus_domestica MD03G1268100.v1.1
prunus_persica Prupe.8G243700_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0291441
rosa_laevigata RLG00000012114
rosa_multiflora Rmu_sc0003296.1_g000002
rosa_roxburghii Rroxscaffold_7G00176050
rosa_rugosa Rorug06G0219400
rosa_samantha Rh6AG331700 Rh6CG344800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 146
AccII CGCG 1 cut(s) 128
AciI CCGC 4 cut(s) 88, 179, 203, 325
AcoI YGGCCR 3 cut(s) 204, 210, 228
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 126
AluBI AGCT 1 cut(s) 123
AluI AGCT 1 cut(s) 123
AoxI GGCC 3 cut(s) 204, 210, 228
ApeKI GCWGC 6 cut(s) 35, 52, 70, 139, 221, 350
AspLEI GCGC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 323
AsuNHI GCTAGC 1 cut(s) 119
BaeGI GKGCMC 3 cut(s) 251, 293, 305
BanI GGYRCC 1 cut(s) 302
BbvI GCAGC 6 cut(s) 39, 47, 82, 126, 233, 337
BccI CCATC 1 cut(s) 65
BceAI ACGGC 3 cut(s) 127, 225, 243
BfaI CTAG 1 cut(s) 120
BisI GCNGC 7 cut(s) 36, 53, 71, 140, 204, 222, 351
BlsI GCNGC 7 cut(s) 37, 54, 72, 141, 205, 223, 352
BmiI GGNNCC 1 cut(s) 304
BmsI GCATC 1 cut(s) 110
BmtI GCTAGC 1 cut(s) 123
BsaJI CCNNGG 4 cut(s) 207, 213, 225, 237
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseDI CCNNGG 4 cut(s) 207, 213, 225, 237
BseGI GGATG 1 cut(s) 101
BseLI CCNNNNNNNGG 1 cut(s) 196
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 3 cut(s) 251, 293, 305
BseXI GCAGC 6 cut(s) 39, 47, 82, 126, 233, 337
Bsh1236I CGCG 1 cut(s) 128
Bsh1285I CGRYCG 1 cut(s) 190
BshFI GGCC 3 cut(s) 206, 212, 230
BshNI GGYRCC 1 cut(s) 302
BsiEI CGRYCG 1 cut(s) 190
BsiSI CCGG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 196
BsnI GGCC 3 cut(s) 206, 212, 230
Bsp1286I GDGCHC 3 cut(s) 251, 293, 305
Bsp19I CCATGG 1 cut(s) 213
BspACI CCGC 4 cut(s) 88, 179, 203, 325
BspANI GGCC 3 cut(s) 206, 212, 230
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 1 cut(s) 304
BspOI GCTAGC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 302
BssECI CCNNGG 4 cut(s) 207, 213, 225, 237
BssNAI GTATAC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 213
Bst1107I GTATAC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 121
BstDSI CCRYGG 4 cut(s) 207, 213, 225, 237
BstF5I GGATG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 70
BstMCI CGRYCG 1 cut(s) 190
BstMWI GCNNNNNNNGC 5 cut(s) 52, 125, 209, 218, 227
BstSLI GKGCMC 3 cut(s) 251, 293, 305
BstUI CGCG 1 cut(s) 128
BstV1I GCAGC 6 cut(s) 39, 47, 82, 126, 233, 337
BstXI CCANNNNNNTGG 2 cut(s) 214, 244
BstZ17I GTATAC 1 cut(s) 147
BsuRI GGCC 3 cut(s) 206, 212, 230
BtgI CCRYGG 4 cut(s) 207, 213, 225, 237
BtgZI GCGATG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 101
BtsI GCAGTG 1 cut(s) 134
BtsIMutI CAGTG 1 cut(s) 134
Cac8I GCNNGC 1 cut(s) 121
CfoI GCGC 1 cut(s) 70
CviAII CATG 6 cut(s) 61, 196, 214, 244, 286, 298
CviJI RGCY 5 cut(s) 123, 206, 212, 224, 230
CviKI_1 RGCY 5 cut(s) 123, 206, 212, 224, 230
EaeI YGGCCR 3 cut(s) 204, 210, 228
Eco130I CCWWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 213
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 6 cut(s) 64, 199, 217, 247, 289, 301
FaiI YATR 9 cut(s) 62, 147, 197, 215, 245, 275, 287, 299, 311
FatI CATG 6 cut(s) 60, 195, 213, 243, 285, 297
FauI CCCGC 2 cut(s) 95, 186
FblI GTMKAC 1 cut(s) 146
Fnu4HI GCNGC 7 cut(s) 36, 53, 71, 140, 204, 222, 351
FokI GGATG 1 cut(s) 88
Fsp4HI GCNGC 7 cut(s) 36, 53, 71, 140, 204, 222, 351
FspBI CTAG 1 cut(s) 120
GlaI GCGC 1 cut(s) 69
GluI GCNGC 7 cut(s) 36, 53, 71, 140, 204, 222, 351
HaeIII GGCC 3 cut(s) 206, 212, 230
HapII CCGG 1 cut(s) 190
HhaI GCGC 1 cut(s) 70
Hin1II CATG 6 cut(s) 64, 199, 217, 247, 289, 301
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 2 cut(s) 9, 19
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 2 cut(s) 134, 147
Hpy188I TCNGA 1 cut(s) 318
Hpy188III TCNNGA 1 cut(s) 13
Hpy8I GTNNAC 2 cut(s) 134, 147
HpyAV CCTTC 1 cut(s) 183
HpyCH4V TGCA 3 cut(s) 35, 101, 353
HpyF10VI GCNNNNNNNGC 5 cut(s) 52, 125, 209, 218, 227
Hsp92II CATG 6 cut(s) 64, 199, 217, 247, 289, 301
HspAI GCGC 1 cut(s) 68
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 3 cut(s) 56, 203, 267
Lsp1109I GCAGC 6 cut(s) 39, 47, 82, 126, 233, 337
LweI GCATC 1 cut(s) 110
MaeI CTAG 1 cut(s) 120
MaeIII GTNAC 1 cut(s) 329
MboII GAAGA 2 cut(s) 28, 352
MhlI GDGCHC 3 cut(s) 251, 293, 305
MluCI AATT 2 cut(s) 107, 345
MluI ACGCGT 1 cut(s) 126
MlyI GAGTC 1 cut(s) 18
MnlI CCTC 4 cut(s) 58, 90, 93, 180
MslI CAYNNNNRTG 4 cut(s) 212, 242, 284, 296
MspA1I CMGCKG 1 cut(s) 327
MspI CCGG 1 cut(s) 190
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 5 cut(s) 52, 125, 209, 218, 227
NcoI CCATGG 1 cut(s) 213
NheI GCTAGC 1 cut(s) 119
NlaIII CATG 6 cut(s) 64, 199, 217, 247, 289, 301
NlaIV GGNNCC 1 cut(s) 304
NmuCI GTSAC 1 cut(s) 329
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 7 cut(s) 37, 54, 72, 141, 205, 223, 352
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 1 cut(s) 304
RseI CAYNNNNRTG 4 cut(s) 212, 242, 284, 296
SatI GCNGC 7 cut(s) 36, 53, 71, 140, 204, 222, 351
SchI GAGTC 1 cut(s) 18
SduI GDGCHC 3 cut(s) 251, 293, 305
SetI ASST 4 cut(s) 29, 125, 172, 316
SfaNI GCATC 1 cut(s) 110
SmiMI CAYNNNNRTG 4 cut(s) 212, 242, 284, 296
Sse9I AATT 2 cut(s) 107, 345
SsiI CCGC 4 cut(s) 88, 179, 203, 325
SspMI CTAG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 213
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 107, 345
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 19
TscAI CASTG 1 cut(s) 141
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 6 cut(s) 35, 52, 70, 139, 221, 350
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 254, 308
TspRI CASTG 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 241
XmiI GTMKAC 1 cut(s) 146
XspI CTAG 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.