Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Reverse (-)

142570 .. 145719

Gene Structure 3150 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G00330.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGCCCAGTCGTCGGAGACATAGCTACACCGTCGGATCTCCTGCAACCACATCTTCCAATTACAGTAACACTACTTTCACCGATCGTTCCTTCCCGACAACCCCTGCCCGTACATCCACCGACACAACCACCTCCATCGCTCGTCGCATCTCCGGTATCTTCATCAACTGCTTCACTCCTCCCGATTCCGTTTCCTCCAACTACATCGACAATTCAAAGTCCTCTTCCGACAATAATATCCGTAGTAGACGTAGCTCAACAGGAAGTAGTAGTGTACAGAGGAGTTATGGAAATGCAAACGAAACAGAGCATACAAGATTCACCTTCGATGAAATCTACGACGCGACCAAGAACTTCTCTCCGTCCTTTAGGATCGGACAAGGCGGTTTTGGCACTGTTTACAAGGTCAAACTCAGAGATGGCAAAACCTTTGCTGTGAAACGTGCCAAAAAGAGTATGCATGACGACCGTCAAGGTGCAGATGCAGAGTTTATGAGTGAGATTCAGACATTAGCTCAAGTTACTCATTTGAGTTTGGTTAAATACTATGGATTTGTTGTTCATAACGACGAGAAGATTCTCGTTGTGGAGTATGTAGCCAATGGAACTCTTAGAGATCACTTGGATTGTAAGGAAGGAAAGACTCTCGACATGGCGACTCGGTTAGATATCGCAACCGATGTAGCTCATGCCATAACCTATCTTCACATGTATACACAGCCACCTATCATCCACAGAGATATCAAATCTTCAAACATTCTCCTCACTGAGAATTACAGAGCCAAGGTTGCTGATTTCGGGTTTGCAAGATTAGCTCCAGATACTGATTCAGGAGCCACGCATGTGTCAACACAAGTCAAAGGAACCGCTGGTTACTTAGACCCAGAGTACTTAACAACGTATCAACTCACAGAGAAAAGTGACGTCTACTCTTTTGGTGTACTGCTCGTCGAGCTTCTCACAGGTCGGCGTCCCATCGAGCTTAGCAGAGGACAAAAAGAACGCATCACCATTAGATGGGCGATCAAGAAGTTCACGAGTGGAGATACGATATCGGTATTGGACCCGAAGCTAGAACAGAATTCAGCGAACAACTTAGCATTAGAGAAGGTATTGGAGATGGCGTTTCAATGTCTAGCTCCTCATAGACGTTCGAGACCAAGCATGAAAAAATGCAGTGAGATTTTGTGGGGAATTCGTAAAGATTACAGAGAGTTGCTCAACACAAGTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

411

Amino Acids

46.17

Weight (kDa)

9.26

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	124 - 395	6.4e-51	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	124 - 395	2.1e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	927
AccB7I	CCANNNNNTGG	1 cut(s)	1017
AccI	GTMKAC	3 cut(s)	247, 713, 927
AccII	CGCG	1 cut(s)	344
AciI	CCGC	2 cut(s)	384, 867
AclWI	GGATC	2 cut(s)	43, 380
AcsI	RAATTY	2 cut(s)	1081, 1194
AcyI	GRCGYC	2 cut(s)	924, 970
AfaI	GTAC	4 cut(s)	112, 276, 890, 942
AfiI	CCNNNNNNNGG	2 cut(s)	12, 1017
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	3 cut(s)	216, 753, 1130
AleI	CACNNNNGTG	1 cut(s)	842
AloI	GAACNNNNNNTCC	2 cut(s)	543, 575
AluBI	AGCT	9 cut(s)	24, 255, 515, 686, 815, 955, 982, 1072, 1139
AluI	AGCT	9 cut(s)	24, 255, 515, 686, 815, 955, 982, 1072, 1139
Alw26I	GTCTC	2 cut(s)	10, 1150
AlwI	GGATC	2 cut(s)	43, 380
AlwNI	CAGNNNCTG	1 cut(s)	824
ApoI	RAATTY	2 cut(s)	1081, 1194
AspS9I	GGNCC	1 cut(s)	1063
AsuHPI	GGTGA	3 cut(s)	70, 313, 1000
AvaII	GGWCC	1 cut(s)	1063
BauI	CACGAG	1 cut(s)	1036
BccI	CCATC	5 cut(s)	143, 413, 983, 1011, 1114
BcoDI	GTCTC	2 cut(s)	10, 1150
BfaI	CTAG	2 cut(s)	1073, 1136
BlpI	GCTNAGC	1 cut(s)	983
BmcAI	AGTACT	1 cut(s)	890
Bme18I	GGWCC	1 cut(s)	1063
BmgT120I	GGNCC	1 cut(s)	1063
BmiI	GGNNCC	3 cut(s)	835, 865, 1065
BmsI	GCATC	3 cut(s)	156, 472, 1014
BoxI	GACNNNNGTC	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	1203, 1235
BpmI	CTGGAG	1 cut(s)	801
Bpu1102I	GCTNAGC	1 cut(s)	983
BpuEI	CTTGAG	1 cut(s)	501
BsaHI	GRCGYC	2 cut(s)	924, 970
BsaI	GGTCTC	1 cut(s)	1150
BsaJI	CCNNGG	1 cut(s)	783
BsaWI	WCCGGW	1 cut(s)	152
BsaXI	ACNNNNNCTCC	2 cut(s)	1109, 1139
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 1017
Bse1I	ACTGG	1 cut(s)	6
BseDI	CCNNGG	1 cut(s)	783
BseGI	GGATG	2 cut(s)	113, 729
BseLI	CCNNNNNNNGG	2 cut(s)	12, 1017
BseMII	CTCAG	2 cut(s)	427, 759
BseNI	ACTGG	1 cut(s)	6
BseRI	GAGGAG	4 cut(s)	168, 295, 752, 1131
BsgI	GTGCAG	1 cut(s)	498
Bsh1236I	CGCG	1 cut(s)	344
Bsh1285I	CGRYCG	2 cut(s)	85, 469
BsiEI	CGRYCG	2 cut(s)	85, 469
BsiSI	CCGG	1 cut(s)	153
BslFI	GGGAC	1 cut(s)	957
BslI	CCNNNNNNNGG	2 cut(s)	12, 1017
BsmAI	GTCTC	2 cut(s)	10, 1150
BsmFI	GGGAC	1 cut(s)	957
Bso31I	GGTCTC	1 cut(s)	1150
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	5 cut(s)	35, 82, 372, 616, 1023
Bsp1720I	GCTNAGC	1 cut(s)	983
BspACI	CCGC	2 cut(s)	384, 867
BspCNI	CTCAG	2 cut(s)	426, 760
BspFNI	CGCG	1 cut(s)	344
BspLI	GGNNCC	3 cut(s)	835, 865, 1065
BspPI	GGATC	2 cut(s)	43, 380
BspTNI	GGTCTC	1 cut(s)	1150
BsrGI	TGTACA	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	783
BssMI	GATC	5 cut(s)	35, 82, 372, 616, 1023
BssNAI	GTATAC	1 cut(s)	714
BssNI	GRCGYC	2 cut(s)	924, 970
BssSI	CACGAG	1 cut(s)	1036
BssT1I	CCWWGG	1 cut(s)	783
Bst1107I	GTATAC	1 cut(s)	714
Bst2BI	CACGAG	1 cut(s)	1036
Bst4CI	ACNGT	4 cut(s)	31, 65, 397, 470
Bst6I	CTCTTC	1 cut(s)	229
BstACI	GRCGYC	2 cut(s)	924, 970
BstAUI	TGTACA	1 cut(s)	274
BstDEI	CTNAG	6 cut(s)	413, 611, 768, 877, 983, 1096
BstF5I	GGATG	2 cut(s)	113, 729
BstFNI	CGCG	1 cut(s)	344
BstKTI	GATC	5 cut(s)	38, 85, 375, 619, 1026
BstMAI	GTCTC	2 cut(s)	10, 1150
BstMBI	GATC	5 cut(s)	35, 82, 372, 616, 1023
BstMCI	CGRYCG	2 cut(s)	85, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	390, 788, 812, 952
BstNSI	RCATGY	2 cut(s)	712, 845
BstPAI	GACNNNNGTC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BstZ17I	GTATAC	1 cut(s)	714
BtgZI	GCGATG	1 cut(s)	121
BtsCI	GGATG	2 cut(s)	113, 729
BtsI	GCAGTG	1 cut(s)	1183
BtsIMutI	CAGTG	3 cut(s)	393, 765, 1183
CaiI	CAGNNNCTG	1 cut(s)	824
Cfr13I	GGNCC	1 cut(s)	1063
CseI	GACGC	2 cut(s)	350, 959
Csp6I	GTAC	4 cut(s)	111, 275, 889, 941
CviAII	CATG	6 cut(s)	461, 652, 689, 709, 842, 1165
CviQI	GTAC	4 cut(s)	111, 275, 889, 941
DdeI	CTNAG	6 cut(s)	413, 611, 768, 877, 983, 1096
DpnI	GATC	5 cut(s)	37, 84, 374, 618, 1025
DpnII	GATC	5 cut(s)	35, 82, 372, 616, 1023
Eam1104I	CTCTTC	1 cut(s)	229
EarI	CTCTTC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	783
Eco31I	GGTCTC	1 cut(s)	1150
Eco32I	GATATC	3 cut(s)	670, 742, 1053
Eco47I	GGWCC	1 cut(s)	1063
EcoRI	GAATTC	2 cut(s)	1081, 1194
EcoRV	GATATC	3 cut(s)	670, 742, 1053
EcoT14I	CCWWGG	1 cut(s)	783
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	783
FaeI	CATG	6 cut(s)	464, 655, 692, 712, 845, 1168
FaqI	GGGAC	1 cut(s)	957
FatI	CATG	6 cut(s)	460, 651, 688, 708, 841, 1164
FblI	GTMKAC	3 cut(s)	247, 713, 927
FokI	GGATG	2 cut(s)	100, 716
FspBI	CTAG	2 cut(s)	1073, 1136
GsuI	CTGGAG	1 cut(s)	801
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	2 cut(s)	350, 959
Hin1I	GRCGYC	2 cut(s)	924, 970
Hin1II	CATG	6 cut(s)	464, 655, 692, 712, 845, 1168
HincII	GTYRAC	1 cut(s)	849
HindII	GTYRAC	1 cut(s)	849
HinfI	GANTC	7 cut(s)	185, 318, 502, 577, 643, 658, 827
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	70, 313, 1000
Hpy166II	GTNNAC	8 cut(s)	248, 275, 400, 714, 849, 928, 941, 1035
Hpy188I	TCNGA	6 cut(s)	15, 35, 229, 377, 416, 507
Hpy188III	TCNNGA	8 cut(s)	94, 182, 647, 818, 831, 1027, 1036, 1155
Hpy8I	GTNNAC	8 cut(s)	248, 275, 400, 714, 849, 928, 941, 1035
Hpy99I	CGWCG	6 cut(s)	15, 35, 147, 344, 572, 953
HpyAV	CCTTC	4 cut(s)	100, 334, 629, 1102
HpyCH4III	ACNGT	4 cut(s)	31, 65, 397, 470
HpyCH4IV	ACGT	5 cut(s)	250, 442, 899, 924, 1150
HpyCH4V	TGCA	7 cut(s)	44, 296, 460, 479, 485, 806, 1176
HpyF10VI	GCNNNNNNNGC	4 cut(s)	390, 788, 812, 952
HpyF3I	CTNAG	6 cut(s)	413, 611, 768, 877, 983, 1096
HpySE526I	ACGT	5 cut(s)	250, 442, 899, 924, 1150
Hsp92I	GRCGYC	2 cut(s)	924, 970
Hsp92II	CATG	6 cut(s)	464, 655, 692, 712, 845, 1168
Kzo9I	GATC	5 cut(s)	35, 82, 372, 616, 1023
LmnI	GCTCC	3 cut(s)	820, 833, 1144
LweI	GCATC	3 cut(s)	156, 472, 1014
MaeI	CTAG	2 cut(s)	1073, 1136
MaeII	ACGT	5 cut(s)	250, 442, 899, 924, 1150
MaeIII	GTNAC	4 cut(s)	65, 520, 872, 920
MalI	GATC	5 cut(s)	37, 84, 374, 618, 1025
MboI	GATC	5 cut(s)	35, 82, 372, 616, 1023
MboII	GAAGA	6 cut(s)	45, 151, 216, 586, 695, 741
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	5 cut(s)	58, 211, 772, 1081, 1194
MlyI	GAGTC	2 cut(s)	637, 652
MmeI	TCCRAC	3 cut(s)	13, 222, 252
MnlI	CCTC	8 cut(s)	142, 189, 205, 232, 273, 773, 983, 1152
Mph1103I	ATGCAT	1 cut(s)	462
MseI	TTAA	2 cut(s)	540, 893
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	869
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	344
MwoI	GCNNNNNNNGC	4 cut(s)	390, 788, 812, 952
NdeII	GATC	5 cut(s)	35, 82, 372, 616, 1023
NlaIII	CATG	6 cut(s)	464, 655, 692, 712, 845, 1168
NlaIV	GGNNCC	3 cut(s)	835, 865, 1065
NmuCI	GTSAC	1 cut(s)	920
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	2 cut(s)	712, 845
OliI	CACNNNNGTG	1 cut(s)	842
PciI	ACATGT	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	185, 318, 502, 577, 827
PflMI	CCANNNNNTGG	1 cut(s)	1017
Ple19I	CGATCG	1 cut(s)	85
PleI	GAGTC	2 cut(s)	637, 652
PpsI	GAGTC	2 cut(s)	637, 652
PscI	ACATGT	1 cut(s)	708
PshAI	GACNNNNGTC	1 cut(s)	468
PspN4I	GGNNCC	3 cut(s)	835, 865, 1065
PspPI	GGNCC	1 cut(s)	1063
PstNI	CAGNNNCTG	1 cut(s)	824
PsuI	RGATCY	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	85
RsaI	GTAC	4 cut(s)	112, 276, 890, 942
RsaNI	GTAC	4 cut(s)	111, 275, 889, 941
RseI	CAYNNNNRTG	1 cut(s)	842
SaqAI	TTAA	2 cut(s)	540, 893
Sau3AI	GATC	5 cut(s)	35, 82, 372, 616, 1023
Sau96I	GGNCC	1 cut(s)	1063
ScaI	AGTACT	1 cut(s)	890
SchI	GAGTC	2 cut(s)	637, 652
SfaNI	GCATC	3 cut(s)	156, 472, 1014
SinI	GGWCC	1 cut(s)	1063
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	5 cut(s)	58, 211, 772, 1081, 1194
SsiI	CCGC	2 cut(s)	384, 867
SspMI	CTAG	2 cut(s)	1073, 1136
StyI	CCWWGG	1 cut(s)	783
TaaI	ACNGT	4 cut(s)	31, 65, 397, 470
TaiI	ACGT	5 cut(s)	253, 445, 902, 927, 1153
TaqI	TCGA	6 cut(s)	207, 327, 648, 951, 978, 1154
TasI	AATT	5 cut(s)	58, 211, 772, 1081, 1194
TatI	WGTACW	3 cut(s)	274, 888, 940
TfiI	GAWTC	5 cut(s)	185, 318, 502, 577, 827
Tru1I	TTAA	2 cut(s)	540, 893
Tru9I	TTAA	2 cut(s)	540, 893
TscAI	CASTG	3 cut(s)	400, 772, 1183
TseFI	GTSAC	1 cut(s)	920
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	4 cut(s)	151, 345, 551, 1181
TspGWI	ACGGA	3 cut(s)	178, 230, 351
TspRI	CASTG	3 cut(s)	400, 772, 1183
Van91I	CCANNNNNTGG	1 cut(s)	1017
VpaK11BI	GGWCC	1 cut(s)	1063
XapI	RAATTY	2 cut(s)	1081, 1194
XceI	RCATGY	2 cut(s)	712, 845
XmiI	GTMKAC	3 cut(s)	247, 713, 927
XspI	CTAG	2 cut(s)	1073, 1136
ZraI	GACGTC	1 cut(s)	925
ZrmI	AGTACT	1 cut(s)	890
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.