Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Forward (+)

47743708 .. 47744091

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG260400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAGACGAACTCCGTCGTACGGACGCCACCGCAACTCCAGCTCCGATGCTCGGAGCACGCCTGACCGCTTCCCCTACTCGCCGACCCCCTCATCCTACTCCGACGCCTCCACTGCACGCAAGTCCACCTCCGGCCAGAGCGCAGTCGCAGTCGCAGCTCGCTCCGTCGTCGGAGTCTTCGTCGGCTGCTTCACTCCTCCCGAGACCAAGAGCTCCGCTAGCTTCGGCGACTCCGAGGAGTTCAAACCTCGCTCTGGTAATACTATATCCATATATTCCTCGTTAGACTACACACGTAAATCTTGGAGATCTGAGATGAATGATTGGTTTGTTATATTTGCTTATTTTGTTAGTGTTTTCGGACGCATCTGGAGCTGGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

127

Amino Acids

14.21

Weight (kDa)

9.66

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	31, 67, 216
AcoI	YGGCCR	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	25, 105
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	3 cut(s)	20, 51, 254
AflIII	ACRYGT	1 cut(s)	293
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	5 cut(s)	42, 158, 213, 222, 375
AluI	AGCT	5 cut(s)	42, 158, 213, 222, 375
Alw21I	GWGCWC	2 cut(s)	59, 215
Alw26I	GTCTC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	155, 186
AspLEI	GCGC	1 cut(s)	143
AsuNHI	GCTAGC	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	59, 215
BbvI	GCAGC	2 cut(s)	167, 173
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	219
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	2 cut(s)	156, 187
BlsI	GCNGC	2 cut(s)	157, 188
BmeT110I	CYCGRG	1 cut(s)	200
BmsI	GCATC	2 cut(s)	37, 375
BmtI	GCTAGC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	169
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	22
BsaAI	YACGTR	1 cut(s)	296
BsaHI	GRCGYC	2 cut(s)	25, 105
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	234
BsaXI	ACNNNNNCTCC	6 cut(s)	20, 26, 50, 56, 165, 195
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 51, 254
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	3 cut(s)	20, 51, 254
BseMII	CTCAG	1 cut(s)	303
BseRI	GAGGAG	2 cut(s)	186, 251
BseXI	GCAGC	2 cut(s)	167, 173
BseYI	CCCAGC	1 cut(s)	375
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	59, 215
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	132
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	3 cut(s)	20, 51, 254
BsmAI	GTCTC	1 cut(s)	197
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	59, 215
Bsp143I	GATC	1 cut(s)	308
BspACI	CCGC	3 cut(s)	31, 67, 216
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	308
BssNI	GRCGYC	2 cut(s)	25, 105
BstACI	GRCGYC	2 cut(s)	25, 105
BstBAI	YACGTR	1 cut(s)	296
BstC8I	GCNNGC	4 cut(s)	59, 118, 160, 220
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	92
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	311
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	308
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 372
BstV1I	GCAGC	2 cut(s)	167, 173
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	308
BstYI	RGATCY	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	4 cut(s)	59, 118, 160, 220
CfoI	GCGC	1 cut(s)	143
CseI	GACGC	3 cut(s)	33, 113, 372
Csp6I	GTAC	1 cut(s)	19
CviJI	RGCY	7 cut(s)	42, 135, 158, 186, 213, 222, 375
CviKI_1	RGCY	7 cut(s)	42, 135, 158, 186, 213, 222, 375
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	310
DpnII	GATC	1 cut(s)	308
EaeI	YGGCCR	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	213
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	200
EcoICRI	GAGCTC	1 cut(s)	213
EcoT38I	GRGCYC	1 cut(s)	215
FaiI	YATR	4 cut(s)	266, 272, 274, 335
Fnu4HI	GCNGC	2 cut(s)	156, 187
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	156, 187
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	156, 187
GsaI	CCCAGC	1 cut(s)	379
GsuI	CTGGAG	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	3 cut(s)	33, 113, 372
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	25, 105
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	2 cut(s)	174, 230
HpaII	CCGG	1 cut(s)	132
Hpy166II	GTNNAC	1 cut(s)	126
Hpy188I	TCNGA	7 cut(s)	46, 54, 103, 173, 235, 313, 362
Hpy188III	TCNNGA	2 cut(s)	200, 370
Hpy8I	GTNNAC	1 cut(s)	126
Hpy99I	CGWCG	5 cut(s)	19, 107, 170, 173, 185
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 372
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	2 cut(s)	25, 105
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	308
LmnI	GCTCC	5 cut(s)	47, 54, 167, 218, 372
LpnPI	CCDG	7 cut(s)	52, 75, 145, 149, 240, 355, 361
Lsp1109I	GCAGC	2 cut(s)	167, 173
LweI	GCATC	2 cut(s)	37, 375
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	295
MalI	GATC	1 cut(s)	310
MboI	GATC	1 cut(s)	308
MboII	GAAGA	1 cut(s)	169
MflI	RGATCY	1 cut(s)	308
MhlI	GDGCHC	2 cut(s)	59, 215
MlyI	GAGTC	2 cut(s)	183, 224
MmeI	TCCRAC	2 cut(s)	126, 151
MnlI	CCTC	7 cut(s)	100, 118, 139, 207, 229, 258, 289
MspI	CCGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 372
NdeII	GATC	1 cut(s)	308
NheI	GCTAGC	1 cut(s)	218
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 231
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	157, 188
PleI	GAGTC	2 cut(s)	182, 224
PpsI	GAGTC	2 cut(s)	182, 224
Ppu21I	YACGTR	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	215
PspFI	CCCAGC	1 cut(s)	375
PspLI	CGTACG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	308
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	156, 187
Sau3AI	GATC	1 cut(s)	308
SchI	GAGTC	2 cut(s)	183, 224
SduI	GDGCHC	2 cut(s)	59, 215
SetI	ASST	8 cut(s)	44, 131, 160, 215, 224, 250, 298, 377
SfaNI	GCATC	2 cut(s)	37, 375
SsiI	CCGC	3 cut(s)	31, 67, 216
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	215
TaiI	ACGT	1 cut(s)	298
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	155, 186
TspDTI	ATGAA	1 cut(s)	332
TspGWI	ACGGA	2 cut(s)	36, 154
TspRI	CASTG	1 cut(s)	118
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.