Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Forward (+)

25565461 .. 25567528

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1116500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGGCGAAAGCAAGGGAATTAGAGGACGGGGCCAAGAAAATTGAAGGGAGTGGTGTTGTACAAAATCAAACTGAAATTCATGGTTCTTCAAACATGGTTTCAATGGAAGAGTCTGAAACCGAATTTGAGCCACAACAAGTCTTCTCCTCGGAATTTGGCACAATCCACGAGAATACGCAGGGTAGCAGACCTGATACTTCTCCAGGGTTCTCCAATTGGTTCAGTAGGAGAGCCAAAAAGAGAGAAAAAAGTGGGAGCGAATATGGGCAGAAACATGTGAAAGTATTTTCGGATGCTTCGAGAGATAGGAGCGAGAGAAGATGCGGTTCTAGTCAAGGCATCTACTCCAATCCCAATAACTCAAGGCATGGGAGTGAGCCCGGGAGTGTAAAGTTCACCATGGAAGAGATAAACAAGGCCACAAAGAGCTTCTCTCGCTCTTGCAAGATTGGAAAGGGTGGTTTCGGGACAGTTTATAAGGGGAGACTCGAAGACGGGACCTTTGTTGCAATCAAACGCGCTAAAAAGAGTGTATATGACAAGCATTTGGGAGTGGAATTCCAAAGCGAGATTCAAATGCTGGCGCAGGTGGAGCATTTGAATTTGGTCAAGTTCTACGGGTACTTGGAGCATGAAGATGAAAAGATTGTTGTTGTCGAGTATGTTCCTAATGGAACCCTCAGACAACATTTGGATTATCATCCGATTATTCATCGAGACATAAAGTCATCCAACATTCTCTTAACGGAAAACTTCAGGGCCAAGGTAGCTGATTTTGGTTTTGCTAGGCTTGCTGCTGATAGCGACTCAGGTGCCACCGATGTTTCTACTCAAGTTAAAGGAACCAGTGGCTACTTGGACCCCGAGTACCTGAGAACCTATCAACTCACGGAGAAGAGTGATGTCTTCTCATTTGGTGTGCTACTGGTTGAGCTAGTTACAGGCAGGCGTCCGATTGAACCTACACGGGAAATCAAGGAAAGAATAACTGCAAAATGGGCTATGAAGAAGTTTACCGATGGAGATGCTCTTTCGATTTTGGACCCGAGGTTAGAACAGACAGCAGTAAGTGGTCTAGCCATCGAAAAGATTCTTGAACTAGCATTACAATGCTTGGCTCCACGCAGACAGAACCGGCCTAGCATGAGGAGGTGCGGGGAGATCCTCTGGAGCATCCGTAAGGATTACAAAGAGGTATTAGCTTCAGACTTCTGTTCATTTTCTAGCCGTTCACAAATAAGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

416

Amino Acids

46.73

Weight (kDa)

8.6

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	146 - 232	5.7e-16	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	147 - 232	7.1e-16	Protein tyrosine and serine/threonine kinase
PK_Tyr_Ser-Thr	PF07714	229 - 387	1.4e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	231 - 387	1.7e-25	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	477
AarI	CACCTGC	1 cut(s)	577
Acc36I	ACCTGC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	812
AccII	CGCG	1 cut(s)	519
AciI	CCGC	2 cut(s)	324, 1155
AclWI	GGATC	1 cut(s)	1156
AcsI	RAATTY	5 cut(s)	75, 122, 152, 557, 601
AcuI	CTGAAG	2 cut(s)	739, 1188
AcyI	GRCGYC	1 cut(s)	949
AfaI	GTAC	4 cut(s)	60, 623, 869, 1243
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	7 cut(s)	44, 90, 102, 575, 601, 959, 1097
AhdI	GACNNNNNGTC	1 cut(s)	724
AjnI	CCWGG	1 cut(s)	202
AjuI	GAANNNNNNNTTGG	2 cut(s)	555, 587
AluBI	AGCT	4 cut(s)	429, 770, 934, 1202
AluI	AGCT	4 cut(s)	429, 770, 934, 1202
Alw26I	GTCTC	2 cut(s)	478, 711
AlwI	GGATC	1 cut(s)	1156
Ama87I	CYCGRG	3 cut(s)	380, 863, 1045
AoxI	GGCC	4 cut(s)	30, 417, 759, 1136
ApeKI	GCWGC	1 cut(s)	794
ApoI	RAATTY	5 cut(s)	75, 122, 152, 557, 601
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
Asp700I	GAANNNNTTC	1 cut(s)	1089
AspLEI	GCGC	2 cut(s)	521, 586
AspS9I	GGNCC	5 cut(s)	30, 498, 759, 859, 1042
AsuC2I	CCSGG	2 cut(s)	381, 382
AsuHPI	GGTGA	1 cut(s)	388
AvaI	CYCGRG	3 cut(s)	380, 863, 1045
AvaII	GGWCC	3 cut(s)	498, 859, 1042
BanI	GGYRCC	1 cut(s)	812
BanII	GRGCYC	1 cut(s)	381
BauI	CACGAG	1 cut(s)	167
BbsI	GAAGAC	3 cut(s)	133, 498, 898
BbvI	GCAGC	1 cut(s)	781
BccI	CCATC	2 cut(s)	1013, 1088
BceAI	ACGGC	1 cut(s)	1212
BcgI	CGANNNNNNTGC	4 cut(s)	794, 828, 1007, 1041
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	2 cut(s)	381, 382
BcoDI	GTCTC	2 cut(s)	478, 711
BfaI	CTAG	7 cut(s)	330, 786, 935, 1076, 1100, 1140, 1224
BfuAI	ACCTGC	1 cut(s)	577
BisI	GCNGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	796
BmcAI	AGTACT	1 cut(s)	1243
Bme1390I	CCNGG	3 cut(s)	204, 381, 382
Bme18I	GGWCC	3 cut(s)	498, 859, 1042
BmeRI	GACNNNNNGTC	1 cut(s)	724
BmeT110I	CYCGRG	3 cut(s)	380, 863, 1045
BmgT120I	GGNCC	5 cut(s)	30, 498, 759, 859, 1042
BmiI	GGNNCC	8 cut(s)	31, 499, 676, 814, 844, 861, 1044, 1119
BmrFI	CCNGG	3 cut(s)	204, 381, 382
BmsI	GCATC	5 cut(s)	283, 311, 348, 1015, 1182
BpiI	GAAGAC	3 cut(s)	133, 498, 898
BplI	GAGNNNNNCTC	2 cut(s)	418, 450
BpmI	CTGGAG	2 cut(s)	186, 1189
BpuEI	CTTGAG	2 cut(s)	346, 816
BpuMI	CCSGG	2 cut(s)	381, 382
BsaBI	GATNNNNATC	1 cut(s)	699
BsaHI	GRCGYC	1 cut(s)	949
BsaJI	CCNNGG	6 cut(s)	147, 203, 380, 399, 762, 1046
BsaXI	ACNNNNNCTCC	2 cut(s)	1162, 1192
Bse118I	RCCGGY	1 cut(s)	1134
Bse1I	ACTGG	2 cut(s)	846, 930
Bse8I	GATNNNNATC	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	204
BseDI	CCNNGG	6 cut(s)	147, 203, 380, 399, 762, 1046
BseGI	GGATG	4 cut(s)	298, 700, 728, 1173
BseJI	GATNNNNATC	1 cut(s)	699
BseMII	CTCAG	3 cut(s)	694, 822, 863
BseNI	ACTGG	2 cut(s)	846, 930
BseRI	GAGGAG	2 cut(s)	136, 1162
BseXI	GCAGC	1 cut(s)	781
Bsh1236I	CGCG	1 cut(s)	519
BshFI	GGCC	4 cut(s)	32, 419, 761, 1138
BshNI	GGYRCC	1 cut(s)	812
BsiHKCI	CYCGRG	3 cut(s)	380, 863, 1045
BsiSI	CCGG	2 cut(s)	381, 1135
BslFI	GGGAC	2 cut(s)	481, 511
BsmAI	GTCTC	2 cut(s)	478, 711
BsmFI	GGGAC	2 cut(s)	481, 511
BsnI	GGCC	4 cut(s)	32, 419, 761, 1138
BsoBI	CYCGRG	3 cut(s)	380, 863, 1045
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	58
Bsp143I	GATC	1 cut(s)	1161
Bsp19I	CCATGG	1 cut(s)	399
BspACI	CCGC	2 cut(s)	324, 1155
BspANI	GGCC	4 cut(s)	32, 419, 761, 1138
BspCNI	CTCAG	3 cut(s)	693, 821, 864
BspFNI	CGCG	1 cut(s)	519
BspLI	GGNNCC	8 cut(s)	31, 499, 676, 814, 844, 861, 1044, 1119
BspMI	ACCTGC	1 cut(s)	577
BspPI	GGATC	1 cut(s)	1156
BspT107I	GGYRCC	1 cut(s)	812
BsrFI	RCCGGY	1 cut(s)	1134
BsrGI	TGTACA	1 cut(s)	58
BsrI	ACTGG	2 cut(s)	846, 930
BssAI	RCCGGY	1 cut(s)	1134
BssECI	CCNNGG	6 cut(s)	147, 203, 380, 399, 762, 1046
BssMI	GATC	1 cut(s)	1161
BssNI	GRCGYC	1 cut(s)	949
BssSI	CACGAG	1 cut(s)	167
BssT1I	CCWWGG	2 cut(s)	399, 762
Bst2BI	CACGAG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	1 cut(s)	472
Bst6I	CTCTTC	3 cut(s)	102, 399, 890
BstACI	GRCGYC	1 cut(s)	949
BstAUI	TGTACA	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	582, 792, 947
BstDEI	CTNAG	3 cut(s)	680, 808, 872
BstDSI	CCRYGG	1 cut(s)	399
BstF5I	GGATG	4 cut(s)	298, 700, 728, 1173
BstFNI	CGCG	1 cut(s)	519
BstHHI	GCGC	2 cut(s)	521, 586
BstKTI	GATC	1 cut(s)	1164
BstMAI	GTCTC	2 cut(s)	478, 711
BstMBI	GATC	1 cut(s)	1161
BstMWI	GCNNNNNNNGC	5 cut(s)	435, 592, 767, 791, 998
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	278
BstSCI	CCNGG	3 cut(s)	202, 379, 380
BstUI	CGCG	1 cut(s)	519
BstV1I	GCAGC	1 cut(s)	781
BstV2I	GAAGAC	3 cut(s)	133, 498, 898
BstX2I	RGATCY	1 cut(s)	1161
BstYI	RGATCY	1 cut(s)	1161
BsuRI	GGCC	4 cut(s)	32, 419, 761, 1138
BtgI	CCRYGG	1 cut(s)	399
BtsCI	GGATG	4 cut(s)	298, 700, 728, 1173
BtsIMutI	CAGTG	1 cut(s)	853
BveI	ACCTGC	1 cut(s)	577
Cac8I	GCNNGC	3 cut(s)	582, 792, 947
CfoI	GCGC	2 cut(s)	521, 586
Cfr10I	RCCGGY	1 cut(s)	1134
Cfr13I	GGNCC	5 cut(s)	30, 498, 759, 859, 1042
Cfr9I	CCCGGG	1 cut(s)	380
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	4 cut(s)	59, 622, 868, 1242
CviAII	CATG	7 cut(s)	80, 94, 275, 368, 400, 632, 1144
CviQI	GTAC	4 cut(s)	59, 622, 868, 1242
DdeI	CTNAG	3 cut(s)	680, 808, 872
DpnI	GATC	1 cut(s)	1163
DpnII	GATC	1 cut(s)	1161
DriI	GACNNNNNGTC	1 cut(s)	724
Eam1104I	CTCTTC	3 cut(s)	102, 399, 890
Eam1105I	GACNNNNNGTC	1 cut(s)	724
EarI	CTCTTC	3 cut(s)	102, 399, 890
Eco130I	CCWWGG	2 cut(s)	399, 762
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	3 cut(s)	498, 859, 1042
Eco57I	CTGAAG	2 cut(s)	739, 1188
Eco88I	CYCGRG	3 cut(s)	380, 863, 1045
EcoO109I	RGGNCCY	1 cut(s)	498
EcoRI	GAATTC	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	202
EcoT14I	CCWWGG	2 cut(s)	399, 762
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	2 cut(s)	399, 762
FaeI	CATG	7 cut(s)	83, 97, 278, 371, 403, 635, 1147
FaqI	GGGAC	2 cut(s)	481, 511
FatI	CATG	7 cut(s)	79, 93, 274, 367, 399, 631, 1143
FauI	CCCGC	1 cut(s)	1148
Fnu4HI	GCNGC	1 cut(s)	795
FokI	GGATG	4 cut(s)	305, 687, 715, 1160
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	1 cut(s)	795
FspBI	CTAG	7 cut(s)	330, 786, 935, 1076, 1100, 1140, 1224
GlaI	GCGC	2 cut(s)	520, 585
GluI	GCNGC	1 cut(s)	795
GsuI	CTGGAG	2 cut(s)	186, 1189
HaeIII	GGCC	4 cut(s)	32, 419, 761, 1138
HapII	CCGG	2 cut(s)	381, 1135
HgaI	GACGC	1 cut(s)	938
HhaI	GCGC	2 cut(s)	521, 586
Hin1I	GRCGYC	1 cut(s)	949
Hin1II	CATG	7 cut(s)	83, 97, 278, 371, 403, 635, 1147
Hin6I	GCGC	2 cut(s)	519, 584
HinP1I	GCGC	2 cut(s)	519, 584
HinfI	GANTC	5 cut(s)	110, 486, 571, 806, 1090
HpaII	CCGG	2 cut(s)	381, 1135
HphI	GGTGA	1 cut(s)	388
Hpy166II	GTNNAC	3 cut(s)	396, 1014, 1232
Hpy188I	TCNGA	7 cut(s)	115, 151, 292, 683, 705, 954, 1207
Hpy188III	TCNNGA	5 cut(s)	300, 466, 716, 1094, 1168
Hpy8I	GTNNAC	3 cut(s)	396, 1014, 1232
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	1 cut(s)	472
HpyCH4V	TGCA	3 cut(s)	444, 509, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	435, 592, 767, 791, 998
HpyF3I	CTNAG	3 cut(s)	680, 808, 872
Hsp92I	GRCGYC	1 cut(s)	949
Hsp92II	CATG	7 cut(s)	83, 97, 278, 371, 403, 635, 1147
HspAI	GCGC	2 cut(s)	519, 584
Kzo9I	GATC	1 cut(s)	1161
LmnI	GCTCC	6 cut(s)	255, 309, 592, 628, 1123, 1170
Lsp1109I	GCAGC	1 cut(s)	781
LweI	GCATC	5 cut(s)	283, 311, 348, 1015, 1182
MaeI	CTAG	7 cut(s)	330, 786, 935, 1076, 1100, 1140, 1224
MaeIII	GTNAC	1 cut(s)	937
MalI	GATC	1 cut(s)	1163
MboI	GATC	1 cut(s)	1161
MfeI	CAATTG	1 cut(s)	214
MflI	RGATCY	1 cut(s)	1161
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	8 cut(s)	17, 39, 75, 122, 152, 214, 557, 601
MlyI	GAGTC	3 cut(s)	119, 480, 800
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	8 cut(s)	16, 157, 689, 1041, 1140, 1143, 1175, 1186
MroXI	GAANNNNTTC	1 cut(s)	1089
MseI	TTAA	2 cut(s)	743, 837
MslI	CAYNNNNRTG	3 cut(s)	372, 636, 1108
MspI	CCGG	2 cut(s)	381, 1135
MspR9I	CCNGG	3 cut(s)	204, 381, 382
MunI	CAATTG	1 cut(s)	214
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	519
MwoI	GCNNNNNNNGC	5 cut(s)	435, 592, 767, 791, 998
NciI	CCSGG	2 cut(s)	381, 382
NcoI	CCATGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	1161
NlaIII	CATG	7 cut(s)	83, 97, 278, 371, 403, 635, 1147
NlaIV	GGNNCC	8 cut(s)	31, 499, 676, 814, 844, 861, 1044, 1119
NspI	RCATGY	1 cut(s)	278
PaqCI	CACCTGC	1 cut(s)	577
PciI	ACATGT	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	1089
PfeI	GAWTC	2 cut(s)	571, 1090
PkrI	GCNGC	1 cut(s)	796
PleI	GAGTC	3 cut(s)	118, 480, 800
PpsI	GAGTC	3 cut(s)	118, 480, 800
PpuMI	RGGWCCY	1 cut(s)	498
PscI	ACATGT	1 cut(s)	274
PsiI	TTATAA	1 cut(s)	477
Psp5II	RGGWCCY	1 cut(s)	498
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
PspN4I	GGNNCC	8 cut(s)	31, 499, 676, 814, 844, 861, 1044, 1119
PspPI	GGNCC	5 cut(s)	30, 498, 759, 859, 1042
PspPPI	RGGWCCY	1 cut(s)	498
PsrI	GAACNNNNNNTAC	2 cut(s)	1089, 1121
PsuI	RGATCY	1 cut(s)	1161
RsaI	GTAC	4 cut(s)	60, 623, 869, 1243
RsaNI	GTAC	4 cut(s)	59, 622, 868, 1242
RseI	CAYNNNNRTG	3 cut(s)	372, 636, 1108
SaqAI	TTAA	2 cut(s)	743, 837
SatI	GCNGC	1 cut(s)	795
Sau3AI	GATC	1 cut(s)	1161
Sau96I	GGNCC	5 cut(s)	30, 498, 759, 859, 1042
ScaI	AGTACT	1 cut(s)	1243
SchI	GAGTC	3 cut(s)	119, 480, 800
ScrFI	CCNGG	3 cut(s)	204, 381, 382
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	5 cut(s)	283, 311, 348, 1015, 1182
SinI	GGWCC	3 cut(s)	498, 859, 1042
SmaI	CCCGGG	1 cut(s)	382
SmiMI	CAYNNNNRTG	3 cut(s)	372, 636, 1108
SmlI	CTYRAG	2 cut(s)	361, 831
SmoI	CTYRAG	2 cut(s)	361, 831
Sse9I	AATT	8 cut(s)	17, 39, 75, 122, 152, 214, 557, 601
SsiI	CCGC	2 cut(s)	324, 1155
SspMI	CTAG	7 cut(s)	330, 786, 935, 1076, 1100, 1140, 1224
StyD4I	CCNGG	3 cut(s)	202, 379, 380
StyI	CCWWGG	2 cut(s)	399, 762
TaaI	ACNGT	1 cut(s)	472
TaqI	TCGA	6 cut(s)	299, 489, 657, 715, 1034, 1083
TasI	AATT	8 cut(s)	17, 39, 75, 122, 152, 214, 557, 601
TatI	WGTACW	2 cut(s)	58, 1241
TfiI	GAWTC	2 cut(s)	571, 1090
Tru1I	TTAA	2 cut(s)	743, 837
Tru9I	TTAA	2 cut(s)	743, 837
TscAI	CASTG	1 cut(s)	853
TseI	GCWGC	1 cut(s)	794
TspDTI	ATGAA	6 cut(s)	68, 648, 654, 701, 1019, 1206
TspGWI	ACGGA	3 cut(s)	761, 905, 1166
TspMI	CCCGGG	1 cut(s)	380
TspRI	CASTG	1 cut(s)	853
VpaK11BI	GGWCC	3 cut(s)	498, 859, 1042
XapI	RAATTY	5 cut(s)	75, 122, 152, 557, 601
XceI	RCATGY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	853
XmaI	CCCGGG	1 cut(s)	380
XmnI	GAANNNNTTC	1 cut(s)	1089
XspI	CTAG	7 cut(s)	330, 786, 935, 1076, 1100, 1140, 1224
ZrmI	AGTACT	1 cut(s)	1243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.