Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Forward (+)

41523822 .. 41530552

Gene Structure 6731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG164100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGACGAACTCCGTCGTACGGACGCCACCACAACTCCAACTCCGATGCTCGGAGCACGCTTGACCGCTTCCCCTACTCGCCTACCCCCTCATCGTACTCCGACGCATCCACTGCACGCAAGTCCACCTCCGGCCAGAGCGCAGTCGCAGTCGCAGCTCTCTCCGTCGTCGGAGTCTTCGTCAGCTGCTTCACTCCTCCCGAGACCAAGAGCTCCGCTAGCTTCGGCGACTCCGGGGAGTTCAAACCTCACTCTGTGTTTTCGGACGCATTTGGGGCTGGGAGTGAGAGGAGACGCAGTTCTGGTTCGAGTCGGGGAGCTTATGCCAGTTCGGATAACTCGAGACATGAGAGACAGGCTGGGTGTTTTCTGAGTTCATTCTCGACGAGGCCTGTATTGACAAATGCATCCGGAAATTTTGTCTACAGTCAACCTGGTTATATCATTGCTCTTTCTAGTTCCCAGTGCATTGCAAATTTGCAATATCATTCTATTCTTCTTTATGTACTGTATTGCTGTATTGCAAATTTGCATTTTATTTACCACAATAGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

185

Amino Acids

20.02

Weight (kDa)

9.37

Isoelectric Point (pI)

55.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	423
AccIII	TCCGGA	1 cut(s)	410
AciI	CCGC	2 cut(s)	67, 216
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	4 cut(s)	415, 475, 526, 552
AcyI	GRCGYC	1 cut(s)	25
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	3 cut(s)	20, 98, 507
AfiI	CCNNNNNNNGG	2 cut(s)	20, 51
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	433
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	5 cut(s)	158, 186, 213, 222, 320
AluI	AGCT	5 cut(s)	158, 186, 213, 222, 320
Alw21I	GWGCWC	2 cut(s)	59, 215
Alw26I	GTCTC	4 cut(s)	197, 286, 337, 346
Ama87I	CYCGRG	2 cut(s)	200, 340
Aor13HI	TCCGGA	1 cut(s)	410
AoxI	GGCC	2 cut(s)	133, 389
ApeKI	GCWGC	2 cut(s)	155, 186
ApoI	RAATTY	4 cut(s)	415, 475, 526, 552
AspLEI	GCGC	1 cut(s)	143
AsuC2I	CCSGG	1 cut(s)	235
AsuNHI	GCTAGC	1 cut(s)	218
AvaI	CYCGRG	2 cut(s)	200, 340
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	59, 215
BbvI	GCAGC	2 cut(s)	167, 173
BciT130I	CCWGG	1 cut(s)	435
BcnI	CCSGG	1 cut(s)	235
BcoDI	GTCTC	4 cut(s)	197, 286, 337, 346
BfaI	CTAG	2 cut(s)	219, 456
BfmI	CTRYAG	1 cut(s)	424
BisI	GCNGC	2 cut(s)	156, 187
BlsI	GCNGC	2 cut(s)	157, 188
Bme1390I	CCNGG	2 cut(s)	235, 435
BmeT110I	CYCGRG	2 cut(s)	200, 340
BmrFI	CCNGG	2 cut(s)	235, 435
BmrI	ACTGGG	1 cut(s)	457
BmsI	GCATC	3 cut(s)	37, 116, 416
BmtI	GCTAGC	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	169
BplI	GAGNNNNNCTC	1 cut(s)	27
BpuMI	CCSGG	1 cut(s)	235
BsaHI	GRCGYC	1 cut(s)	25
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	410
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 26, 50, 56, 165, 195, 283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 51
Bse1I	ACTGG	2 cut(s)	327, 463
Bse3DI	GCAATG	2 cut(s)	444, 468
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	107, 407
BseLI	CCNNNNNNNGG	2 cut(s)	20, 51
BseMI	GCAATG	2 cut(s)	444, 468
BseMII	CTCAG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	327, 463
BseRI	GAGGAG	2 cut(s)	186, 304
BseXI	GCAGC	2 cut(s)	167, 173
BseYI	CCCAGC	2 cut(s)	278, 359
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	135, 391
BsiHKAI	GWGCWC	2 cut(s)	59, 215
BsiHKCI	CYCGRG	2 cut(s)	200, 340
BsiSI	CCGG	3 cut(s)	132, 234, 411
BsiWI	CGTACG	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	20, 51
BsmAI	GTCTC	4 cut(s)	197, 286, 337, 346
BsmBI	CGTCTC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	135, 391
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	200, 340
Bsp1286I	GDGCHC	2 cut(s)	59, 215
Bsp13I	TCCGGA	1 cut(s)	410
BspACI	CCGC	2 cut(s)	67, 216
BspANI	GGCC	2 cut(s)	135, 391
BspCNI	CTCAG	1 cut(s)	363
BspEI	TCCGGA	1 cut(s)	410
BspOI	GCTAGC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	444, 468
BsrI	ACTGG	2 cut(s)	327, 463
BssECI	CCNNGG	1 cut(s)	234
BssNI	GRCGYC	1 cut(s)	25
Bst2UI	CCWGG	1 cut(s)	435
Bst4CI	ACNGT	2 cut(s)	428, 510
BstACI	GRCGYC	1 cut(s)	25
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	59, 118, 220
BstDEI	CTNAG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	107, 407
BstHHI	GCGC	1 cut(s)	143
BstMAI	GTCTC	4 cut(s)	197, 286, 337, 346
BstMWI	GCNNNNNNNGC	4 cut(s)	113, 155, 219, 275
BstNI	CCWGG	1 cut(s)	435
BstSCI	CCNGG	2 cut(s)	233, 433
BstSFI	CTRYAG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	167, 173
BstV2I	GAAGAC	1 cut(s)	169
BsuRI	GGCC	2 cut(s)	135, 391
BtsCI	GGATG	2 cut(s)	107, 407
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 470
Cac8I	GCNNGC	3 cut(s)	59, 118, 220
CfoI	GCGC	1 cut(s)	143
CseI	GACGC	4 cut(s)	33, 113, 275, 303
CsiI	ACCWGGT	1 cut(s)	433
Csp6I	GTAC	3 cut(s)	19, 97, 506
CviAII	CATG	1 cut(s)	347
CviJI	RGCY	9 cut(s)	135, 158, 186, 213, 222, 278, 320, 359, 391
CviKI_1	RGCY	9 cut(s)	135, 158, 186, 213, 222, 278, 320, 359, 391
CviQI	GTAC	3 cut(s)	19, 97, 506
DdeI	CTNAG	1 cut(s)	371
DraIII	CACNNNGTG	1 cut(s)	256
EaeI	YGGCCR	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	391
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	197
Eco53kI	GAGCTC	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	200, 340
EcoICRI	GAGCTC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	433
EcoT22I	ATGCAT	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	215
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	1 cut(s)	350
FaiI	YATR	4 cut(s)	324, 348, 441, 504
FatI	CATG	1 cut(s)	346
FblI	GTMKAC	1 cut(s)	423
Fnu4HI	GCNGC	2 cut(s)	156, 187
FokI	GGATG	2 cut(s)	94, 394
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	2 cut(s)	156, 187
FspBI	CTAG	2 cut(s)	219, 456
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	156, 187
GsaI	CCCAGC	2 cut(s)	282, 363
HaeIII	GGCC	2 cut(s)	135, 391
HapII	CCGG	3 cut(s)	132, 234, 411
HgaI	GACGC	4 cut(s)	33, 113, 275, 303
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	25
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	3 cut(s)	174, 230, 310
HpaII	CCGG	3 cut(s)	132, 234, 411
Hpy166II	GTNNAC	3 cut(s)	126, 424, 431
Hpy188I	TCNGA	7 cut(s)	46, 54, 103, 173, 265, 334, 372
Hpy188III	TCNNGA	4 cut(s)	200, 342, 382, 411
Hpy8I	GTNNAC	3 cut(s)	126, 424, 431
Hpy99I	CGWCG	5 cut(s)	19, 107, 170, 173, 388
HpyCH4III	ACNGT	2 cut(s)	428, 510
HpyCH4V	TGCA	7 cut(s)	116, 407, 468, 473, 481, 524, 532
HpyF10VI	GCNNNNNNNGC	4 cut(s)	113, 155, 219, 275
HpyF3I	CTNAG	1 cut(s)	371
Hsp92I	GRCGYC	1 cut(s)	25
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	141
Kpn2I	TCCGGA	1 cut(s)	410
LmnI	GCTCC	3 cut(s)	54, 218, 317
Lsp1109I	GCAGC	2 cut(s)	167, 173
LweI	GCATC	3 cut(s)	37, 116, 416
MabI	ACCWGGT	1 cut(s)	433
MaeI	CTAG	2 cut(s)	219, 456
MboII	GAAGA	2 cut(s)	169, 488
MhlI	GDGCHC	2 cut(s)	59, 215
MluCI	AATT	4 cut(s)	415, 475, 526, 552
MlyI	GAGTC	3 cut(s)	183, 224, 319
MmeI	TCCRAC	3 cut(s)	63, 126, 151
MnlI	CCTC	6 cut(s)	100, 139, 207, 258, 282, 381
Mph1103I	ATGCAT	1 cut(s)	409
MroI	TCCGGA	1 cut(s)	410
MspA1I	CMGCKG	1 cut(s)	186
MspI	CCGG	3 cut(s)	132, 234, 411
MspR9I	CCNGG	2 cut(s)	235, 435
MvaI	CCWGG	1 cut(s)	435
MwoI	GCNNNNNNNGC	4 cut(s)	113, 155, 219, 275
NciI	CCSGG	1 cut(s)	235
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	350
NsiI	ATGCAT	1 cut(s)	409
PaeR7I	CTCGAG	1 cut(s)	340
PceI	AGGCCT	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 338
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	2 cut(s)	157, 188
PleI	GAGTC	3 cut(s)	182, 224, 318
PpsI	GAGTC	3 cut(s)	182, 224, 318
Psp124BI	GAGCTC	1 cut(s)	215
Psp6I	CCWGG	1 cut(s)	433
PspFI	CCCAGC	2 cut(s)	278, 359
PspGI	CCWGG	1 cut(s)	433
PspLI	CGTACG	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	186
RsaI	GTAC	3 cut(s)	20, 98, 507
RsaNI	GTAC	3 cut(s)	19, 97, 506
SacI	GAGCTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	156, 187
SchI	GAGTC	3 cut(s)	183, 224, 319
ScrFI	CCNGG	2 cut(s)	235, 435
SduI	GDGCHC	2 cut(s)	59, 215
SetI	ASST	8 cut(s)	131, 160, 188, 215, 224, 250, 322, 436
SexAI	ACCWGGT	1 cut(s)	433
SfaNI	GCATC	3 cut(s)	37, 116, 416
SfcI	CTRYAG	1 cut(s)	424
Sfr274I	CTCGAG	1 cut(s)	340
SlaI	CTCGAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	4 cut(s)	415, 475, 526, 552
SseBI	AGGCCT	1 cut(s)	391
SsiI	CCGC	2 cut(s)	67, 216
SspMI	CTAG	2 cut(s)	219, 456
SstI	GAGCTC	1 cut(s)	215
StuI	AGGCCT	1 cut(s)	391
StyD4I	CCNGG	2 cut(s)	233, 433
TaaI	ACNGT	2 cut(s)	428, 510
TaqI	TCGA	3 cut(s)	308, 341, 383
TasI	AATT	4 cut(s)	415, 475, 526, 552
TatI	WGTACW	1 cut(s)	505
TscAI	CASTG	2 cut(s)	118, 470
TseI	GCWGC	2 cut(s)	155, 186
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	36, 154
TspRI	CASTG	2 cut(s)	118, 470
XapI	RAATTY	4 cut(s)	415, 475, 526, 552
XhoI	CTCGAG	1 cut(s)	340
XmiI	GTMKAC	1 cut(s)	423
XspI	CTAG	2 cut(s)	219, 456
Zsp2I	ATGCAT	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.