Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Reverse (-)

11261134 .. 11261624

Gene Structure 491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG134800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTAGAGTGGCGGCAGCCGGAGTTCGAGTCTGAGTCCGGGTCGGGTCTGGAGCTCCAGCTGGAGTTTGGTGCTCTCTCTCTTTCTGAGTTCGACACTCTTCCTTTGGAGTTTGGTGCTCCAGCTGCATCCACTGCATGCAAGTCCACCTCCGGCCAGAGCGTAGTCGCAGTCGCAGCTCGCTCCGTCGTCGGAGTCTTCGTCGGCTGCTTCACTCCTCCCGAGACCAAGAGCTCCGCTAGCTTCGGCGACTCCGGGGAGTTCAAACCTCACTCTGACGCATCTAGGGCTGGGAGTGAGAGGAGACGCAGTTCTGGTTCGAGTCGGGGAGCTTACGCTAGTTCGAATAACTCGAGACGTGAGAGACAGGCTGGGTGTGTGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

128

Amino Acids

13.45

Weight (kDa)

5.86

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	13, 237
AcoI	YGGCCR	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	265
AjiI	CACGTC	1 cut(s)	359
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	7 cut(s)	55, 61, 125, 179, 234, 243, 332
AluI	AGCT	7 cut(s)	55, 61, 125, 179, 234, 243, 332
Alw21I	GWGCWC	4 cut(s)	57, 76, 121, 236
Alw26I	GTCTC	4 cut(s)	218, 298, 349, 358
Ama87I	CYCGRG	2 cut(s)	221, 352
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	4 cut(s)	16, 125, 176, 207
AsuC2I	CCSGG	2 cut(s)	40, 256
AsuII	TTCGAA	1 cut(s)	344
AsuNHI	GCTAGC	1 cut(s)	239
AvaI	CYCGRG	2 cut(s)	221, 352
BanII	GRGCYC	2 cut(s)	57, 236
BbsI	GAAGAC	1 cut(s)	190
Bbv12I	GWGCWC	4 cut(s)	57, 76, 121, 236
BbvI	GCAGC	4 cut(s)	28, 112, 188, 194
BcnI	CCSGG	2 cut(s)	40, 256
BcoDI	GTCTC	4 cut(s)	218, 298, 349, 358
BfaI	CTAG	4 cut(s)	5, 240, 285, 339
BisI	GCNGC	5 cut(s)	14, 17, 126, 177, 208
BlsI	GCNGC	5 cut(s)	15, 18, 127, 178, 209
Bme1390I	CCNGG	2 cut(s)	40, 256
BmeT110I	CYCGRG	2 cut(s)	221, 352
BmgBI	CACGTC	1 cut(s)	359
BmrFI	CCNGG	2 cut(s)	40, 256
BmsI	GCATC	2 cut(s)	137, 290
BmtI	GCTAGC	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	190
BpmI	CTGGAG	4 cut(s)	41, 71, 83, 105
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	40, 256
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	255
BsaXI	ACNNNNNCTCC	6 cut(s)	14, 44, 186, 216, 295, 325
BseDI	CCNNGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	128
BseMII	CTCAG	2 cut(s)	24, 78
BseRI	GAGGAG	2 cut(s)	207, 316
BseXI	GCAGC	4 cut(s)	28, 112, 188, 194
BseYI	CCCAGC	2 cut(s)	290, 371
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	4 cut(s)	57, 76, 121, 236
BsiHKCI	CYCGRG	2 cut(s)	221, 352
BsiSI	CCGG	4 cut(s)	20, 39, 153, 255
BsmAI	GTCTC	4 cut(s)	218, 298, 349, 358
BsmBI	CGTCTC	2 cut(s)	298, 349
BsnI	GGCC	1 cut(s)	156
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	2 cut(s)	221, 352
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	4 cut(s)	57, 76, 121, 236
BspACI	CCGC	2 cut(s)	13, 237
BspANI	GGCC	1 cut(s)	156
BspCNI	CTCAG	2 cut(s)	25, 79
BspOI	GCTAGC	1 cut(s)	243
BspT104I	TTCGAA	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	218
BssECI	CCNNGG	1 cut(s)	255
Bst6I	CTCTTC	1 cut(s)	105
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	344
BstC8I	GCNNGC	3 cut(s)	139, 181, 241
BstDEI	CTNAG	2 cut(s)	33, 87
BstF5I	GGATG	1 cut(s)	128
BstMAI	GTCTC	4 cut(s)	218, 298, 349, 358
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 125, 134, 176, 240, 287
BstNSI	RCATGY	1 cut(s)	141
BstSCI	CCNGG	2 cut(s)	38, 254
BstV1I	GCAGC	4 cut(s)	28, 112, 188, 194
BstV2I	GAAGAC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	156
BtrI	CACGTC	1 cut(s)	359
BtsCI	GGATG	1 cut(s)	128
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	139, 181, 241
CseI	GACGC	2 cut(s)	287, 315
CviAII	CATG	1 cut(s)	138
DdeI	CTNAG	2 cut(s)	33, 87
EaeI	YGGCCR	1 cut(s)	154
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Ecl136II	GAGCTC	2 cut(s)	55, 234
Eco24I	GRGCYC	2 cut(s)	57, 236
Eco31I	GGTCTC	1 cut(s)	218
Eco53kI	GAGCTC	2 cut(s)	55, 234
Eco88I	CYCGRG	2 cut(s)	221, 352
EcoICRI	GAGCTC	2 cut(s)	55, 234
EcoT38I	GRGCYC	2 cut(s)	57, 236
Esp3I	CGTCTC	2 cut(s)	298, 349
FaeI	CATG	1 cut(s)	141
FaiI	YATR	1 cut(s)	139
FatI	CATG	1 cut(s)	137
Fnu4HI	GCNGC	5 cut(s)	14, 17, 126, 177, 208
FokI	GGATG	1 cut(s)	115
FriOI	GRGCYC	2 cut(s)	57, 236
Fsp4HI	GCNGC	5 cut(s)	14, 17, 126, 177, 208
FspBI	CTAG	4 cut(s)	5, 240, 285, 339
GluI	GCNGC	5 cut(s)	14, 17, 126, 177, 208
GsaI	CCCAGC	2 cut(s)	294, 375
GsuI	CTGGAG	4 cut(s)	41, 71, 83, 105
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	4 cut(s)	20, 39, 153, 255
HgaI	GACGC	2 cut(s)	287, 315
Hin1II	CATG	1 cut(s)	141
HinfI	GANTC	5 cut(s)	29, 35, 195, 251, 322
HpaII	CCGG	4 cut(s)	20, 39, 153, 255
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188I	TCNGA	4 cut(s)	34, 88, 194, 277
Hpy188III	TCNNGA	3 cut(s)	50, 221, 354
Hpy8I	GTNNAC	1 cut(s)	147
Hpy99I	CGWCG	3 cut(s)	191, 194, 206
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	128, 137, 141
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 125, 134, 176, 240, 287
HpyF3I	CTNAG	2 cut(s)	33, 87
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	141
LmnI	GCTCC	6 cut(s)	52, 60, 124, 188, 239, 329
Lsp1109I	GCAGC	4 cut(s)	28, 112, 188, 194
LweI	GCATC	2 cut(s)	137, 290
MaeI	CTAG	4 cut(s)	5, 240, 285, 339
MaeII	ACGT	1 cut(s)	358
MboII	GAAGA	2 cut(s)	92, 190
MhlI	GDGCHC	4 cut(s)	57, 76, 121, 236
MlyI	GAGTC	5 cut(s)	38, 44, 204, 245, 331
MmeI	TCCRAC	1 cut(s)	172
MnlI	CCTC	4 cut(s)	160, 228, 279, 294
MspA1I	CMGCKG	2 cut(s)	61, 125
MspI	CCGG	4 cut(s)	20, 39, 153, 255
MspR9I	CCNGG	2 cut(s)	40, 256
MwoI	GCNNNNNNNGC	6 cut(s)	10, 125, 134, 176, 240, 287
NciI	CCSGG	2 cut(s)	40, 256
NheI	GCTAGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	141
NspI	RCATGY	1 cut(s)	141
NspV	TTCGAA	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 350
PkrI	GCNGC	5 cut(s)	15, 18, 127, 178, 209
PleI	GAGTC	5 cut(s)	37, 43, 203, 245, 330
PpsI	GAGTC	5 cut(s)	37, 43, 203, 245, 330
Psp124BI	GAGCTC	2 cut(s)	57, 236
PspFI	CCCAGC	2 cut(s)	290, 371
PvuII	CAGCTG	2 cut(s)	61, 125
SacI	GAGCTC	2 cut(s)	57, 236
SatI	GCNGC	5 cut(s)	14, 17, 126, 177, 208
SchI	GAGTC	5 cut(s)	38, 44, 204, 245, 331
ScrFI	CCNGG	2 cut(s)	40, 256
SduI	GDGCHC	4 cut(s)	57, 76, 121, 236
SfaNI	GCATC	2 cut(s)	137, 290
Sfr274I	CTCGAG	1 cut(s)	352
SfuI	TTCGAA	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	352
SmoI	CTYRAG	1 cut(s)	352
SphI	GCATGC	1 cut(s)	141
SsiI	CCGC	2 cut(s)	13, 237
SspMI	CTAG	4 cut(s)	5, 240, 285, 339
SstI	GAGCTC	2 cut(s)	57, 236
StyD4I	CCNGG	2 cut(s)	38, 254
TaiI	ACGT	1 cut(s)	361
TaqI	TCGA	5 cut(s)	27, 93, 320, 344, 353
TauI	GCSGC	1 cut(s)	16
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	4 cut(s)	16, 125, 176, 207
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	1 cut(s)	139
XceI	RCATGY	1 cut(s)	141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	65
XhoI	CTCGAG	1 cut(s)	352
XspI	CTAG	4 cut(s)	5, 240, 285, 339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.