Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009006

Physical Location & Seq

Genomic Coordinates Forward (+)

35579597 .. 35580209

Gene Structure 613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG232900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGAGACGAACTCCGTCGTACGGACGCCACCGCAACTCCAGCTCCGATGCTCGGAGCACGCCTGACCGCTTCCCCTACTCGCCGACCCCCTCATCCTACTCCGACGCCTCCACTGCACGCAAGTCCACCTCCGGCCAGAGCGCAGTCGCAGTCGCAGCTCGCTCCGTCGTCGGAGTCTTCGTCGGCTGCTTCACTCCTCCCGAGACCAAGAGCTCCGCTAGCTTCGGCGACTCCGAGGAGTTCAAACCTCGCTCTGTGTTTTCGGACGCATCTGGAGCTGGGAGTGAGAGGAGACGCAGTTCTGGTTCGAGTCGGGGAGCTTACGCCAGTTCGAATAACTCGAGACGTGAGAGACAGGCTGGGTGTGTGAAGTTCACCATGGATGAAATCTACAGGGCTACAAACAACTTCTCTCCCTCTTCCAAGATCGGACAAGGCGGCTTTGGGACGGTTTACAAAGGGAGGCTTGAAGACGGGACCTTAGTTGCAATTAAGCGTGCCAAAAAGGTTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0007275 GO:0008150 GO:0009555 GO:0032501 GO:0032502 GO:0048229 GO:0048856

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

PPR Pkinase Pkinase_Tyr

Protein Analysis

171

Amino Acids

18.38

Weight (kDa)

10.39

Isoelectric Point (pI)

60.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009006)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00330 AT4G00330
fragaria_vesca	FvH4_7g14830 FvH4_7g14840 FvH4_7g14840
malus_domestica	MD01G1066900.v1.1 MD06G1116500.v1.1 MD07G1133900.v1.1
prunus_persica	Prupe.2G173500_v2.0.a1
pyrus_communis	pycom01g09610 pycom06g10830 pycom07g13150
rosa_chinensis	RchiOBHm_Chr1g0356791
rosa_laevigata	RLG00000028083
rosa_multiflora	Rmu_sc0000517.1_g000031
rosa_roxburghii	Rroxscaffold_4G00299360
rosa_rugosa	Rorug01G0251100
rosa_samantha	Rh1BG232900 Rh1DG260400 Rh4AG164100 Rh5CG134800
rosa_wichuraiana	Rw1G023460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	31, 67, 216, 438
AcoI	YGGCCR	1 cut(s)	133
AcyI	GRCGYC	2 cut(s)	25, 105
AfaI	GTAC	1 cut(s)	20
AfiI	CCNNNNNNNGG	2 cut(s)	20, 51
AgsI	TTSAA	2 cut(s)	244, 470
AjiI	CACGTC	1 cut(s)	347
AloI	GAACNNNNNNTCC	2 cut(s)	283, 315
AluBI	AGCT	6 cut(s)	42, 158, 213, 222, 278, 320
AluI	AGCT	6 cut(s)	42, 158, 213, 222, 278, 320
Alw21I	GWGCWC	2 cut(s)	59, 215
Alw26I	GTCTC	4 cut(s)	197, 286, 337, 346
Ama87I	CYCGRG	2 cut(s)	200, 340
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	2 cut(s)	155, 186
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	477
AsuHPI	GGTGA	1 cut(s)	367
AsuII	TTCGAA	1 cut(s)	332
AsuNHI	GCTAGC	1 cut(s)	218
AvaI	CYCGRG	2 cut(s)	200, 340
AvaII	GGWCC	1 cut(s)	477
BanII	GRGCYC	1 cut(s)	215
BbsI	GAAGAC	2 cut(s)	169, 477
Bbv12I	GWGCWC	2 cut(s)	59, 215
BbvI	GCAGC	2 cut(s)	167, 173
BcoDI	GTCTC	4 cut(s)	197, 286, 337, 346
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	391
BisI	GCNGC	3 cut(s)	156, 187, 439
BlsI	GCNGC	3 cut(s)	157, 188, 440
Bme18I	GGWCC	1 cut(s)	477
BmeT110I	CYCGRG	2 cut(s)	200, 340
BmgBI	CACGTC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	477
BmiI	GGNNCC	1 cut(s)	478
BmsI	GCATC	2 cut(s)	37, 278
BmtI	GCTAGC	1 cut(s)	222
BpiI	GAAGAC	2 cut(s)	169, 477
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	22, 294
Bpu14I	TTCGAA	1 cut(s)	332
BsaHI	GRCGYC	2 cut(s)	25, 105
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	234, 378
BsaXI	ACNNNNNCTCC	8 cut(s)	20, 26, 50, 56, 165, 195, 283, 313
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 51
Bse1I	ACTGG	1 cut(s)	327
BseDI	CCNNGG	2 cut(s)	234, 378
BseGI	GGATG	2 cut(s)	92, 388
BseLI	CCNNNNNNNGG	2 cut(s)	20, 51
BseNI	ACTGG	1 cut(s)	327
BseRI	GAGGAG	3 cut(s)	186, 251, 304
BseXI	GCAGC	2 cut(s)	167, 173
BseYI	CCCAGC	2 cut(s)	278, 359
BsgI	GTGCAG	1 cut(s)	99
BshFI	GGCC	1 cut(s)	135
BsiHKAI	GWGCWC	2 cut(s)	59, 215
BsiHKCI	CYCGRG	2 cut(s)	200, 340
BsiSI	CCGG	1 cut(s)	132
BsiWI	CGTACG	1 cut(s)	18
BslFI	GGGAC	2 cut(s)	460, 490
BslI	CCNNNNNNNGG	2 cut(s)	20, 51
BsmAI	GTCTC	4 cut(s)	197, 286, 337, 346
BsmBI	CGTCTC	2 cut(s)	286, 337
BsmFI	GGGAC	2 cut(s)	460, 490
BsnI	GGCC	1 cut(s)	135
Bso31I	GGTCTC	1 cut(s)	197
BsoBI	CYCGRG	2 cut(s)	200, 340
Bsp119I	TTCGAA	1 cut(s)	332
Bsp1286I	GDGCHC	2 cut(s)	59, 215
Bsp143I	GATC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	378
BspACI	CCGC	4 cut(s)	31, 67, 216, 438
BspANI	GGCC	1 cut(s)	135
BspLI	GGNNCC	1 cut(s)	478
BspOI	GCTAGC	1 cut(s)	222
BspT104I	TTCGAA	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	234, 378
BssMI	GATC	1 cut(s)	426
BssNI	GRCGYC	2 cut(s)	25, 105
BssT1I	CCWWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	451
Bst6I	CTCTTC	1 cut(s)	424
BstACI	GRCGYC	2 cut(s)	25, 105
BstBI	TTCGAA	1 cut(s)	332
BstC8I	GCNNGC	5 cut(s)	59, 118, 160, 220, 498
BstDEI	CTNAG	1 cut(s)	481
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	92, 388
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	1 cut(s)	429
BstMAI	GTCTC	4 cut(s)	197, 286, 337, 346
BstMBI	GATC	1 cut(s)	426
BstMWI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 275
BstSFI	CTRYAG	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	167, 173
BstV2I	GAAGAC	2 cut(s)	169, 477
BsuRI	GGCC	1 cut(s)	135
BtgI	CCRYGG	1 cut(s)	378
BtrI	CACGTC	1 cut(s)	347
BtsCI	GGATG	2 cut(s)	92, 388
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	5 cut(s)	59, 118, 160, 220, 498
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	477
CseI	GACGC	4 cut(s)	33, 113, 275, 303
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	1 cut(s)	379
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	1 cut(s)	481
DpnI	GATC	1 cut(s)	428
DpnII	GATC	1 cut(s)	426
EaeI	YGGCCR	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	424
EarI	CTCTTC	1 cut(s)	424
Ecl136II	GAGCTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	215
Eco31I	GGTCTC	1 cut(s)	197
Eco47I	GGWCC	1 cut(s)	477
Eco53kI	GAGCTC	1 cut(s)	213
Eco88I	CYCGRG	2 cut(s)	200, 340
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	215
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	2 cut(s)	286, 337
FaeI	CATG	1 cut(s)	382
FaiI	YATR	1 cut(s)	380
FalI	AAGNNNNNCTT	2 cut(s)	450, 482
FaqI	GGGAC	2 cut(s)	460, 490
FatI	CATG	1 cut(s)	378
Fnu4HI	GCNGC	3 cut(s)	156, 187, 439
FokI	GGATG	2 cut(s)	79, 395
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	3 cut(s)	156, 187, 439
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	3 cut(s)	156, 187, 439
GsaI	CCCAGC	2 cut(s)	282, 363
GsuI	CTGGAG	2 cut(s)	22, 294
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	4 cut(s)	33, 113, 275, 303
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	2 cut(s)	25, 105
Hin1II	CATG	1 cut(s)	382
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	3 cut(s)	174, 230, 310
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	126, 375, 454
Hpy188I	TCNGA	7 cut(s)	46, 54, 103, 173, 235, 265, 431
Hpy188III	TCNNGA	3 cut(s)	200, 273, 342
Hpy8I	GTNNAC	3 cut(s)	126, 375, 454
Hpy99I	CGWCG	5 cut(s)	19, 107, 170, 173, 185
HpyCH4III	ACNGT	1 cut(s)	451
HpyCH4IV	ACGT	1 cut(s)	346
HpyCH4V	TGCA	2 cut(s)	116, 488
HpyF10VI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 275
HpyF3I	CTNAG	1 cut(s)	481
HpySE526I	ACGT	1 cut(s)	346
Hsp92I	GRCGYC	2 cut(s)	25, 105
Hsp92II	CATG	1 cut(s)	382
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	1 cut(s)	426
LmnI	GCTCC	6 cut(s)	47, 54, 167, 218, 275, 317
Lsp1109I	GCAGC	2 cut(s)	167, 173
LweI	GCATC	2 cut(s)	37, 278
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	1 cut(s)	346
MalI	GATC	1 cut(s)	428
MboI	GATC	1 cut(s)	426
MboII	GAAGA	3 cut(s)	169, 411, 482
MhlI	GDGCHC	2 cut(s)	59, 215
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	183, 224, 319
MmeI	TCCRAC	2 cut(s)	126, 151
MnlI	CCTC	9 cut(s)	100, 118, 139, 207, 229, 258, 282, 427, 456
MseI	TTAA	1 cut(s)	492
MspI	CCGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	39, 113, 155, 219, 275
NcoI	CCATGG	1 cut(s)	378
NdeII	GATC	1 cut(s)	426
NheI	GCTAGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	382
NlaIV	GGNNCC	1 cut(s)	478
NspV	TTCGAA	1 cut(s)	332
PaeR7I	CTCGAG	1 cut(s)	340
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 231, 338
Pfl23II	CGTACG	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	157, 188, 440
PleI	GAGTC	3 cut(s)	182, 224, 318
PpsI	GAGTC	3 cut(s)	182, 224, 318
PpuMI	RGGWCCY	1 cut(s)	477
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	477
PspFI	CCCAGC	2 cut(s)	278, 359
PspLI	CGTACG	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	1 cut(s)	477
PspPPI	RGGWCCY	1 cut(s)	477
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	3 cut(s)	156, 187, 439
Sau3AI	GATC	1 cut(s)	426
Sau96I	GGNCC	1 cut(s)	477
SchI	GAGTC	3 cut(s)	183, 224, 319
SduI	GDGCHC	2 cut(s)	59, 215
SfaNI	GCATC	2 cut(s)	37, 278
SfcI	CTRYAG	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	340
SfuI	TTCGAA	1 cut(s)	332
SinI	GGWCC	1 cut(s)	477
SlaI	CTCGAG	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	340
SmoI	CTYRAG	1 cut(s)	340
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	4 cut(s)	31, 67, 216, 438
SspMI	CTAG	1 cut(s)	219
SstI	GAGCTC	1 cut(s)	215
StyI	CCWWGG	1 cut(s)	378
TaaI	ACNGT	1 cut(s)	451
TaiI	ACGT	1 cut(s)	349
TaqI	TCGA	3 cut(s)	308, 332, 341
TasI	AATT	1 cut(s)	489
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	1 cut(s)	118
TseI	GCWGC	2 cut(s)	155, 186
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	2 cut(s)	36, 154
TspRI	CASTG	1 cut(s)	118
VpaK11BI	GGWCC	1 cut(s)	477
XhoI	CTCGAG	1 cut(s)	340
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.