Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

543911 .. 545566

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G01310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCGTCTCCTTCGCTTCTGCAGTCTTCCGCTTCTTCGTTTCACGGACGTTTCTCACCATTAGCGGCTCCATCCTCCGCACGAATGCTCTCTCCGCCGCTCAGAAACGTGGTGAAAGTCTCGGCGTCTGGAACTGTACTGGTCGAGAAATCTGAAGCCGAGAAAACTCAACGCCTCAAAACCGCTTACCTCGAGAGGATTATCCCTGCGCTCAAAGAAGAGTTCAAGTACGTTAATATTCACCAGGTTCCAAAGGTACAGAAGATTGTAGTGAATTGTGGTATTGGAGATGCGGCGCAGAACGACAAGGGTTTGGAGGCTGCGATGAAGGATATCGCGCTTATCACAGGGCAGAAACCTATTAAGACACGAGCTAGAGCTTCCATTGCTACTTTCAAGATCAGGGAAGATCAACCTCTTGGGATTGCTGTCACTCTCAGAGGAGATGTAATGTACTCCTTCTTGGATCGTCTTATCAACTTAGCCCTTCCGAGAACTCGAGATTTCCAAGGTGTGAGTCCCAGTAGCTTTGATGGGAACGGAAACTACAGTATTGGTGTGAAAGACCAAGGTGTATTCCCTGAAATCAGGTTTGATGCCGTTGGAAAAACGAGAGGAATGGATGTATGCATCAGCACAACGGCTAAAAGCGATCAAGAAGGACAGAAACTATTGGCTCTAATGGGAATGCCTTTCAGGGAAGGAGGTGGTGGCAGCACAGGCGCGATAGTGCGGAAGAAGAAACTAAAGTCTCATCACTTTGATGCTAAAGGAAAAGGAAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

262

Amino Acids

28.34

Weight (kDa)

10.0

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	79 - 135	1.4e-24	Ribosomal protein L5
Ribosomal_L5_C	PF00673	139 - 232	2.6e-35	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	100
AccII	CGCG	2 cut(s)	338, 725
AciI	CCGC	8 cut(s)	30, 65, 78, 95, 98, 183, 293, 733
AclWI	GGATC	1 cut(s)	474
AcuI	CTGAAG	1 cut(s)	174
AcyI	GRCGYC	2 cut(s)	5, 125
AfaI	GTAC	4 cut(s)	138, 230, 258, 455
AgsI	TTSAA	2 cut(s)	226, 397
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	3 cut(s)	374, 380, 528
AluI	AGCT	3 cut(s)	374, 380, 528
Alw26I	GTCTC	3 cut(s)	12, 124, 756
AlwI	GGATC	1 cut(s)	474
Ama87I	CYCGRG	2 cut(s)	191, 498
ApeKI	GCWGC	2 cut(s)	320, 714
AspLEI	GCGC	4 cut(s)	211, 298, 340, 725
AsuHPI	GGTGA	3 cut(s)	48, 124, 233
AvaI	CYCGRG	2 cut(s)	191, 498
BauI	CACGAG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	18
BbvI	GCAGC	2 cut(s)	307, 726
BccI	CCATC	2 cut(s)	79, 527
BceAI	ACGGC	2 cut(s)	584, 657
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	3 cut(s)	12, 124, 756
BfaI	CTAG	1 cut(s)	375
BfmI	CTRYAG	2 cut(s)	20, 547
BisI	GCNGC	5 cut(s)	66, 98, 294, 321, 715
BlsI	GCNGC	5 cut(s)	67, 99, 295, 322, 716
Bme1390I	CCNGG	1 cut(s)	245
BmeT110I	CYCGRG	2 cut(s)	191, 498
BmiI	GGNNCC	2 cut(s)	69, 249
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	516
BmsI	GCATC	4 cut(s)	280, 586, 639, 754
BmuI	ACTGGG	1 cut(s)	516
BpiI	GAAGAC	1 cut(s)	18
BsaHI	GRCGYC	2 cut(s)	5, 125
BsaJI	CCNNGG	2 cut(s)	508, 568
Bse1I	ACTGG	2 cut(s)	144, 522
Bse3DI	GCAATG	1 cut(s)	384
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	2 cut(s)	508, 568
BseGI	GGATG	2 cut(s)	71, 628
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	2 cut(s)	115, 451
BseNI	ACTGG	2 cut(s)	144, 522
BseRI	GAGGAG	1 cut(s)	456
BseXI	GCAGC	2 cut(s)	307, 726
Bsh1236I	CGCG	2 cut(s)	338, 725
BsiHKCI	CYCGRG	2 cut(s)	191, 498
BslFI	GGGAC	1 cut(s)	504
BsmAI	GTCTC	3 cut(s)	12, 124, 756
BsmBI	CGTCTC	1 cut(s)	12
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	2 cut(s)	90, 693
BsoBI	CYCGRG	2 cut(s)	191, 498
Bsp143I	GATC	4 cut(s)	399, 409, 466, 652
BspACI	CCGC	8 cut(s)	30, 65, 78, 95, 98, 183, 293, 733
BspCNI	CTCAG	2 cut(s)	114, 450
BspFNI	CGCG	2 cut(s)	338, 725
BspLI	GGNNCC	2 cut(s)	69, 249
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	474
BsrBI	CCGCTC	1 cut(s)	100
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	144, 522
BssECI	CCNNGG	2 cut(s)	508, 568
BssMI	GATC	4 cut(s)	399, 409, 466, 652
BssNI	GRCGYC	2 cut(s)	5, 125
BssSI	CACGAG	1 cut(s)	369
BssT1I	CCWWGG	2 cut(s)	508, 568
Bst2BI	CACGAG	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	2 cut(s)	136, 551
Bst6I	CTCTTC	1 cut(s)	213
BstACI	GRCGYC	2 cut(s)	5, 125
BstDEI	CTNAG	3 cut(s)	101, 437, 481
BstF5I	GGATG	2 cut(s)	71, 628
BstFNI	CGCG	2 cut(s)	338, 725
BstHHI	GCGC	4 cut(s)	211, 298, 340, 725
BstKTI	GATC	4 cut(s)	402, 412, 469, 655
BstMAI	GTCTC	3 cut(s)	12, 124, 756
BstMBI	GATC	4 cut(s)	399, 409, 466, 652
BstMWI	GCNNNNNNNGC	3 cut(s)	94, 386, 720
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	2 cut(s)	20, 547
BstUI	CGCG	2 cut(s)	338, 725
BstV1I	GCAGC	2 cut(s)	307, 726
BstV2I	GAAGAC	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	2 cut(s)	71, 628
CfoI	GCGC	4 cut(s)	211, 298, 340, 725
CseI	GACGC	1 cut(s)	114
CsiI	ACCWGGT	1 cut(s)	243
Csp6I	GTAC	4 cut(s)	137, 229, 257, 454
CviJI	RGCY	9 cut(s)	68, 158, 320, 374, 380, 485, 528, 644, 677
CviKI_1	RGCY	9 cut(s)	68, 158, 320, 374, 380, 485, 528, 644, 677
CviQI	GTAC	4 cut(s)	137, 229, 257, 454
DdeI	CTNAG	3 cut(s)	101, 437, 481
DpnI	GATC	4 cut(s)	401, 411, 468, 654
DpnII	GATC	4 cut(s)	399, 409, 466, 652
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	508, 568
Eco32I	GATATC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	174
Eco88I	CYCGRG	2 cut(s)	191, 498
EcoRII	CCWGG	1 cut(s)	243
EcoRV	GATATC	1 cut(s)	334
EcoT14I	CCWWGG	2 cut(s)	508, 568
EcoT22I	ATGCAT	1 cut(s)	632
ErhI	CCWWGG	2 cut(s)	508, 568
Esp3I	CGTCTC	1 cut(s)	12
FaiI	YATR	1 cut(s)	628
FaqI	GGGAC	1 cut(s)	504
Fnu4HI	GCNGC	5 cut(s)	66, 98, 294, 321, 715
FokI	GGATG	2 cut(s)	58, 635
Fsp4HI	GCNGC	5 cut(s)	66, 98, 294, 321, 715
FspBI	CTAG	1 cut(s)	375
GlaI	GCGC	4 cut(s)	210, 297, 339, 724
GluI	GCNGC	5 cut(s)	66, 98, 294, 321, 715
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	4 cut(s)	211, 298, 340, 725
Hin1I	GRCGYC	2 cut(s)	5, 125
Hin6I	GCGC	4 cut(s)	209, 296, 338, 723
HinP1I	GCGC	4 cut(s)	209, 296, 338, 723
HinfI	GANTC	1 cut(s)	517
HphI	GGTGA	3 cut(s)	48, 124, 233
Hpy188I	TCNGA	4 cut(s)	104, 154, 440, 492
Hpy188III	TCNNGA	6 cut(s)	129, 145, 193, 397, 500, 656
HpyAV	CCTTC	6 cut(s)	21, 322, 469, 497, 653, 695
HpyCH4III	ACNGT	2 cut(s)	136, 551
HpyCH4IV	ACGT	3 cut(s)	49, 108, 231
HpyCH4V	TGCA	2 cut(s)	22, 630
HpyF10VI	GCNNNNNNNGC	3 cut(s)	94, 386, 720
HpyF3I	CTNAG	3 cut(s)	101, 437, 481
HpySE526I	ACGT	3 cut(s)	49, 108, 231
Hsp92I	GRCGYC	2 cut(s)	5, 125
HspAI	GCGC	4 cut(s)	209, 296, 338, 723
Kzo9I	GATC	4 cut(s)	399, 409, 466, 652
LmnI	GCTCC	1 cut(s)	73
Lsp1109I	GCAGC	2 cut(s)	307, 726
LweI	GCATC	4 cut(s)	280, 586, 639, 754
MabI	ACCWGGT	1 cut(s)	243
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	3 cut(s)	49, 108, 231
MaeIII	GTNAC	1 cut(s)	430
MalI	GATC	4 cut(s)	401, 411, 468, 654
MbiI	CCGCTC	1 cut(s)	100
MboI	GATC	4 cut(s)	399, 409, 466, 652
MboII	GAAGA	7 cut(s)	18, 27, 230, 274, 419, 748, 751
MluCI	AATT	1 cut(s)	274
MlyI	GAGTC	1 cut(s)	526
MmeI	TCCRAC	1 cut(s)	583
MnlI	CCTC	9 cut(s)	85, 185, 189, 200, 310, 426, 434, 608, 698
Mph1103I	ATGCAT	1 cut(s)	632
MseI	TTAA	2 cut(s)	234, 363
MslI	CAYNNNNRTG	1 cut(s)	762
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	2 cut(s)	90, 693
MvaI	CCWGG	1 cut(s)	245
MvnI	CGCG	2 cut(s)	338, 725
MwoI	GCNNNNNNNGC	3 cut(s)	94, 386, 720
NdeII	GATC	4 cut(s)	399, 409, 466, 652
NlaIV	GGNNCC	2 cut(s)	69, 249
NmeAIII	GCCGAG	2 cut(s)	101, 184
NmuCI	GTSAC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	632
PaeR7I	CTCGAG	2 cut(s)	191, 498
PctI	GAATGC	2 cut(s)	90, 693
PkrI	GCNGC	5 cut(s)	67, 99, 295, 322, 716
PleI	GAGTC	1 cut(s)	525
PpsI	GAGTC	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	243
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	69, 249
PsrI	GAACNNNNNNTAC	2 cut(s)	530, 562
PstI	CTGCAG	1 cut(s)	24
RsaI	GTAC	4 cut(s)	138, 230, 258, 455
RsaNI	GTAC	4 cut(s)	137, 229, 257, 454
RseI	CAYNNNNRTG	1 cut(s)	762
SaqAI	TTAA	2 cut(s)	234, 363
SatI	GCNGC	5 cut(s)	66, 98, 294, 321, 715
Sau3AI	GATC	4 cut(s)	399, 409, 466, 652
SchI	GAGTC	1 cut(s)	526
ScrFI	CCNGG	1 cut(s)	245
SexAI	ACCWGGT	1 cut(s)	243
SfaNI	GCATC	4 cut(s)	280, 586, 639, 754
SfcI	CTRYAG	2 cut(s)	20, 547
Sfr274I	CTCGAG	2 cut(s)	191, 498
SlaI	CTCGAG	2 cut(s)	191, 498
SmiMI	CAYNNNNRTG	1 cut(s)	762
SmlI	CTYRAG	2 cut(s)	191, 498
SmoI	CTYRAG	2 cut(s)	191, 498
Sse9I	AATT	1 cut(s)	274
SsiI	CCGC	8 cut(s)	30, 65, 78, 95, 98, 183, 293, 733
SspI	AATATT	1 cut(s)	238
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	2 cut(s)	508, 568
TaaI	ACNGT	2 cut(s)	136, 551
TaiI	ACGT	3 cut(s)	52, 111, 234
TaqI	TCGA	3 cut(s)	144, 192, 499
TasI	AATT	1 cut(s)	274
TatI	WGTACW	2 cut(s)	136, 453
TauI	GCSGC	3 cut(s)	68, 100, 296
Tru1I	TTAA	2 cut(s)	234, 363
Tru9I	TTAA	2 cut(s)	234, 363
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	2 cut(s)	320, 714
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	1 cut(s)	341
TspGWI	ACGGA	2 cut(s)	60, 555
XhoI	CTCGAG	2 cut(s)	191, 498
XspI	CTAG	1 cut(s)	375
Zsp2I	ATGCAT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.