Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Forward (+)

17869882 .. 17872202

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028029

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGCGTGCCCTTGGCTCTTACGCTCCTCTACGTCGTCGTTTCACGGCCAATTCCCAATTGCAGCTTCGCCTCCGCGGCTGGCGTTCGGAAACCCGGGAAATGTGAGCGTGGTGAAGGCCGCGGAGGTTGTGCTGGTGGAGAAGACGGAGTCGGAGAAGGTCAGTCGGCTTAAGACGGCTTACCTTGAGAGAATCATCCCTAAGCTCAAAGAAGAGTTCTCGTACCAGAACATCCATGAGGTTCCGAAGGTTGAGAAGGTTGTGGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCTAAGGGATTGGAAGCAGCGATGCGTGACTTGGCGCTCATTACAGGGCAGAGACCTGTGAAGACACGAGCAAAGGCTTCCCTTGCGCAATTTAAGATCAGGGAAGGTCAGCCACTTGGGATTGCTGTCACACTAAGAGGAAATGTGATGTACGCATTCCTTGATCGGCTCATTAACTTGGGTTTTCCTAGGACAAGGGATTTTCAAGGTCTCAACCCGAACAGCTTTGATGGAAATGGTAATTATGGCGTTGGAATTAAGGAACAGAGTGTGTTCCCGGAGATCAAGTTTGATCTTGGTAAGGGCAGGGGAATGGATGTCTGCATCAAAACAACTGCCAAAACCGATAAAGAAGCTCAAACACTTTTGGCTCTAATGGGGATGCCATTCAGAGAGACTGGCCCTGTAACCGAAGTGCGCAAGAAGAAGCTGAGGTCTCACCATTTCAGTCGAAAGGGAGGATCATTAATGTGGCCGCATAATGTTTATATGGTCCTAAGCAATGACTTCTCTGTTCACCTCCAATCCTTCAGAAGAGGATTGCCGTTCAGAGACCCTTTCCACGAGCCACACCGCGAGGCGGCCATAGAAGAAGCCAAATTCTCCCCATTGGGGAAGAAGAAGAAAACGATGGTTGCCATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

315

Amino Acids

35.01

Weight (kDa)

9.9

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	77 - 133	1.8e-24	Ribosomal protein L5
Ribosomal_L5_C	PF00673	137 - 229	2.6e-34	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	384, 716
AccII	CGCG	3 cut(s)	76, 122, 873
AciI	CCGC	7 cut(s)	74, 76, 120, 122, 773, 871, 878
AclWI	GGATC	1 cut(s)	766
AcoI	YGGCCR	3 cut(s)	46, 770, 879
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	811
AfaI	GTAC	2 cut(s)	224, 449
AfiI	CCNNNNNNNGG	2 cut(s)	877, 909
AflII	CTTAAG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	503
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	5 cut(s)	65, 205, 522, 653, 727
AluI	AGCT	5 cut(s)	65, 205, 522, 653, 727
Alw26I	GTCTC	5 cut(s)	343, 512, 686, 738, 843
AlwI	GGATC	1 cut(s)	766
Ama87I	CYCGRG	1 cut(s)	94
AoxI	GGCC	5 cut(s)	46, 117, 697, 770, 879
ApeKI	GCWGC	2 cut(s)	62, 314
ApoI	RAATTY	1 cut(s)	896
AseI	ATTAAT	1 cut(s)	764
AspA2I	CCTAGG	1 cut(s)	485
AspLEI	GCGC	3 cut(s)	334, 385, 717
AspS9I	GGNCC	2 cut(s)	698, 790
AsuC2I	CCSGG	3 cut(s)	95, 96, 575
AsuHPI	GGTGA	4 cut(s)	124, 277, 728, 806
AvaI	CYCGRG	1 cut(s)	94
AvaII	GGWCC	1 cut(s)	790
AvrII	CCTAGG	1 cut(s)	485
BaeGI	GKGCMC	1 cut(s)	11
BauI	CACGAG	2 cut(s)	363, 860
BbsI	GAAGAC	2 cut(s)	149, 365
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	74, 326
BccI	CCATC	2 cut(s)	521, 922
BceAI	ACGGC	3 cut(s)	61, 192, 826
BcnI	CCSGG	3 cut(s)	95, 96, 575
BcoDI	GTCTC	5 cut(s)	343, 512, 686, 738, 843
BfaI	CTAG	1 cut(s)	486
BfoI	RGCGCY	1 cut(s)	335
BfrI	CTTAAG	1 cut(s)	170
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	6 cut(s)	63, 77, 120, 315, 773, 879
BlnI	CCTAGG	1 cut(s)	485
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	6 cut(s)	64, 78, 121, 316, 774, 880
Bme1390I	CCNGG	3 cut(s)	95, 96, 575
Bme18I	GGWCC	1 cut(s)	790
BmeT110I	CYCGRG	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	698, 790
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	3 cut(s)	95, 96, 575
BmsI	GCATC	4 cut(s)	274, 309, 630, 669
BpiI	GAAGAC	2 cut(s)	149, 365
Bpu10I	CCTNAGC	4 cut(s)	201, 300, 728, 794
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	206
BpuMI	CCSGG	3 cut(s)	95, 96, 575
BsaI	GGTCTC	4 cut(s)	343, 512, 738, 843
BsaJI	CCNNGG	5 cut(s)	11, 74, 94, 120, 485
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	877, 909
Bse1I	ACTGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	805
BseDI	CCNNGG	5 cut(s)	11, 74, 94, 120, 485
BseGI	GGATG	4 cut(s)	195, 231, 619, 684
BseLI	CCNNNNNNNGG	2 cut(s)	877, 909
BseMI	GCAATG	1 cut(s)	805
BseMII	CTCAG	2 cut(s)	302, 719
BseNI	ACTGG	1 cut(s)	700
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	74, 326
Bsh1236I	CGCG	3 cut(s)	76, 122, 873
BshFI	GGCC	5 cut(s)	48, 119, 699, 772, 881
BsiHKCI	CYCGRG	1 cut(s)	94
BsiSI	CCGG	2 cut(s)	95, 575
BslI	CCNNNNNNNGG	2 cut(s)	877, 909
BsmAI	GTCTC	5 cut(s)	343, 512, 686, 738, 843
BsmI	GAATGC	2 cut(s)	301, 452
BsnI	GGCC	5 cut(s)	48, 119, 699, 772, 881
Bso31I	GGTCTC	4 cut(s)	343, 512, 738, 843
BsoBI	CYCGRG	1 cut(s)	94
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	5 cut(s)	393, 460, 579, 589, 758
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	7 cut(s)	74, 76, 120, 122, 773, 871, 878
BspANI	GGCC	5 cut(s)	48, 119, 699, 772, 881
BspCNI	CTCAG	2 cut(s)	301, 720
BspFNI	CGCG	3 cut(s)	76, 122, 873
BspLI	GGNNCC	1 cut(s)	243
BspPI	GGATC	1 cut(s)	766
BspTI	CTTAAG	1 cut(s)	170
BspTNI	GGTCTC	4 cut(s)	343, 512, 738, 843
BsrDI	GCAATG	1 cut(s)	805
BsrI	ACTGG	1 cut(s)	700
BssECI	CCNNGG	5 cut(s)	11, 74, 94, 120, 485
BssMI	GATC	5 cut(s)	393, 460, 579, 589, 758
BssSI	CACGAG	2 cut(s)	363, 860
BssT1I	CCWWGG	2 cut(s)	11, 485
Bst2BI	CACGAG	2 cut(s)	363, 860
Bst4CI	ACNGT	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	207, 826
BstAFI	CTTAAG	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	7, 81
BstDEI	CTNAG	6 cut(s)	201, 288, 300, 431, 728, 794
BstDSI	CCRYGG	2 cut(s)	74, 120
BstF5I	GGATG	4 cut(s)	195, 231, 619, 684
BstFNI	CGCG	3 cut(s)	76, 122, 873
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	334, 385, 717
BstKTI	GATC	5 cut(s)	396, 463, 582, 592, 761
BstMAI	GTCTC	5 cut(s)	343, 512, 686, 738, 843
BstMBI	GATC	5 cut(s)	393, 460, 579, 589, 758
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 380
BstSCI	CCNGG	3 cut(s)	93, 94, 573
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	3 cut(s)	76, 122, 873
BstV1I	GCAGC	2 cut(s)	74, 326
BstV2I	GAAGAC	2 cut(s)	149, 365
BsuRI	GGCC	5 cut(s)	48, 119, 699, 772, 881
BtgI	CCRYGG	2 cut(s)	74, 120
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	4 cut(s)	195, 231, 619, 684
Cac8I	GCNNGC	2 cut(s)	7, 81
CfoI	GCGC	3 cut(s)	334, 385, 717
Cfr13I	GGNCC	2 cut(s)	698, 790
Cfr42I	CCGCGG	2 cut(s)	77, 123
Cfr9I	CCCGGG	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	223, 448
CviAII	CATG	2 cut(s)	236, 937
CviQI	GTAC	2 cut(s)	223, 448
DdeI	CTNAG	6 cut(s)	201, 288, 300, 431, 728, 794
DpnI	GATC	5 cut(s)	395, 462, 581, 591, 760
DpnII	GATC	5 cut(s)	393, 460, 579, 589, 758
EaeI	YGGCCR	3 cut(s)	46, 770, 879
Eam1104I	CTCTTC	2 cut(s)	207, 826
EarI	CTCTTC	2 cut(s)	207, 826
Eco130I	CCWWGG	2 cut(s)	11, 485
Eco31I	GGTCTC	4 cut(s)	343, 512, 738, 843
Eco47I	GGWCC	1 cut(s)	790
Eco57I	CTGAAG	1 cut(s)	811
Eco88I	CYCGRG	1 cut(s)	94
EcoT14I	CCWWGG	2 cut(s)	11, 485
ErhI	CCWWGG	2 cut(s)	11, 485
FaeI	CATG	2 cut(s)	239, 940
FaiI	YATR	7 cut(s)	237, 543, 777, 786, 788, 884, 938
FatI	CATG	2 cut(s)	235, 936
Fnu4HI	GCNGC	6 cut(s)	63, 77, 120, 315, 773, 879
FokI	GGATG	4 cut(s)	182, 218, 626, 691
Fsp4HI	GCNGC	6 cut(s)	63, 77, 120, 315, 773, 879
FspBI	CTAG	1 cut(s)	486
FspI	TGCGCA	2 cut(s)	384, 716
GlaI	GCGC	3 cut(s)	333, 384, 716
GluI	GCNGC	6 cut(s)	63, 77, 120, 315, 773, 879
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	5 cut(s)	48, 119, 699, 772, 881
HapII	CCGG	2 cut(s)	95, 575
HhaI	GCGC	3 cut(s)	334, 385, 717
Hin1II	CATG	2 cut(s)	239, 940
Hin6I	GCGC	3 cut(s)	332, 383, 715
HinP1I	GCGC	3 cut(s)	332, 383, 715
HinfI	GANTC	2 cut(s)	149, 192
HpaII	CCGG	2 cut(s)	95, 575
HphI	GGTGA	4 cut(s)	124, 277, 728, 806
Hpy166II	GTNNAC	2 cut(s)	268, 814
Hpy188I	TCNGA	6 cut(s)	89, 154, 246, 689, 830, 848
Hpy8I	GTNNAC	2 cut(s)	268, 814
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	6 cut(s)	109, 151, 241, 250, 395, 835
HpyCH4III	ACNGT	1 cut(s)	272
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	62, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 380
HpyF3I	CTNAG	6 cut(s)	201, 288, 300, 431, 728, 794
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	239, 940
HspAI	GCGC	3 cut(s)	332, 383, 715
KspI	CCGCGG	2 cut(s)	77, 123
Kzo9I	GATC	5 cut(s)	393, 460, 579, 589, 758
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	74, 326
LweI	GCATC	4 cut(s)	274, 309, 630, 669
MaeI	CTAG	1 cut(s)	486
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	323, 424, 703
MalI	GATC	5 cut(s)	395, 462, 581, 591, 760
MboI	GATC	5 cut(s)	393, 460, 579, 589, 758
MboII	GAAGA	9 cut(s)	154, 224, 370, 733, 843, 899, 925, 928, 931
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	6 cut(s)	50, 57, 386, 538, 552, 896
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	132, 529
MseI	TTAA	5 cut(s)	171, 390, 471, 555, 764
MslI	CAYNNNNRTG	1 cut(s)	766
MspA1I	CMGCKG	2 cut(s)	76, 122
MspCI	CTTAAG	1 cut(s)	170
MspI	CCGG	2 cut(s)	95, 575
MspR9I	CCNGG	3 cut(s)	95, 96, 575
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	2 cut(s)	301, 452
MvnI	CGCG	3 cut(s)	76, 122, 873
MwoI	GCNNNNNNNGC	2 cut(s)	76, 380
NciI	CCSGG	3 cut(s)	95, 96, 575
NdeII	GATC	5 cut(s)	393, 460, 579, 589, 758
NlaIII	CATG	2 cut(s)	239, 940
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	323, 424
NsbI	TGCGCA	2 cut(s)	384, 716
PctI	GAATGC	2 cut(s)	301, 452
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	148
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	6 cut(s)	64, 78, 121, 316, 774, 880
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	764
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	2 cut(s)	698, 790
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	2 cut(s)	224, 449
RsaNI	GTAC	2 cut(s)	223, 448
RseI	CAYNNNNRTG	1 cut(s)	766
SacII	CCGCGG	2 cut(s)	77, 123
SaqAI	TTAA	5 cut(s)	171, 390, 471, 555, 764
SatI	GCNGC	6 cut(s)	63, 77, 120, 315, 773, 879
Sau3AI	GATC	5 cut(s)	393, 460, 579, 589, 758
Sau96I	GGNCC	2 cut(s)	698, 790
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	95, 96, 575
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	4 cut(s)	274, 309, 630, 669
Sfr303I	CCGCGG	2 cut(s)	77, 123
SgrBI	CCGCGG	2 cut(s)	77, 123
SinI	GGWCC	1 cut(s)	790
SmaI	CCCGGG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	766
SmlI	CTYRAG	2 cut(s)	170, 185
SmoI	CTYRAG	2 cut(s)	170, 185
Sse9I	AATT	6 cut(s)	50, 57, 386, 538, 552, 896
SsiI	CCGC	7 cut(s)	74, 76, 120, 122, 773, 871, 878
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	3 cut(s)	93, 94, 573
StyI	CCWWGG	2 cut(s)	11, 485
TaaI	ACNGT	1 cut(s)	272
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	748
TasI	AATT	6 cut(s)	50, 57, 386, 538, 552, 896
TauI	GCSGC	4 cut(s)	79, 122, 775, 881
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	5 cut(s)	171, 390, 471, 555, 764
Tru9I	TTAA	5 cut(s)	171, 390, 471, 555, 764
TseFI	GTSAC	2 cut(s)	323, 424
TseI	GCWGC	2 cut(s)	62, 314
Tsp45I	GTSAC	2 cut(s)	323, 424
TspGWI	ACGGA	1 cut(s)	161
TspMI	CCCGGG	1 cut(s)	94
Tth111I	GACNNNGTC	1 cut(s)	148
Vha464I	CTTAAG	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	790
VspI	ATTAAT	1 cut(s)	764
XapI	RAATTY	1 cut(s)	896
XmaI	CCCGGG	1 cut(s)	94
XmaJI	CCTAGG	1 cut(s)	485
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.