Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Forward (+)

14404794 .. 14407312

Gene Structure 2519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGCCAAACTTGCCCTTACTCTTGGTTAGACAGATAATACGTCATTTTCTCCTAAAGCGCGTTACCTTATCCTATTTCATTCACAGAGAGCTATGTCCAACAACTACTCTTATTATTAGCCAAATTTACAAAACAAAACCTCAACCTTCTCTCACAGCCATTATCGTAAATAAGTTCAAATACGAGCCCCTTCCACCACCTCCCTCCGTAAACCCCTTCCCCCTCAGCTCAAAAAACAAACGGATACTGGAAAATTTAGACACAACAATGGCCTGGCCTTCGCTCTTCCGCTCTGCCACGTCGTCGTTTCACGGCCAATTCCCAGTTGCGGTTTCACCTCCGCCTTTTCGACAGTCGCACGGAAAACCGAGGACTGTGGTGGTGCCCGTTAAGGCCGCGGAGGTGGTGCTGGTGGAGAAGTCCGAGGCAGAGAAGGTCAGCCGGTTCAAAACCGCTTACCTCGAAAGAATCATCCCTAAGCTCAAAGAAGAATTCTCCTACACCAACATCCACCAGGTTCCAAAGATTGAGAAGATTGTGGTGAACTGCGGTATTGGAGATGCTCAACAGAATGCTAAGGGATTGGAAGCGGCAATGAATGACTTAGCACTCATTACAGGGCAGAGACCCATCAAGACACGAGCAAAGGTTTCCCTTGCTACCTTCAAGATCAGGGAAGGCCAGCCACTTGGGATTGCTGTCACACTCAGAGGAAATGTGATGTACGCATTCCTTGATCGTCTCATTAACTTGGGTCTTCCTAGGACAAGGGATTTCCAAGGTCTAAACCCGAATAGTTTTGATGGAAACGGAAATTATGCCCTTGGGGTTAAGGAACAGAGTGTGTTCCCAGAGATCCGCTTTGATCTTGGCAAGGGCAGGGGAATGGATGTGTGCATCAGAACAACTGCCAAAACAGATAAAGAAGCTCAGACGCTTTTGGCTCAGATGGGAATGCCGTTCAGAGAGACCGGCCCTGCATCAGCGGTGCGCAAGAAAAAGCTCAAGTCTCACCATTTCAGTTCGAAGGGTGGAAGAGGACGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

350

Amino Acids

39.01

Weight (kDa)

10.28

Isoelectric Point (pI)

40.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	169 - 225	8e-25	Ribosomal protein L5
Ribosomal_L5_C	PF00673	229 - 321	2.1e-34	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	992
AccB1I	GGYRCC	1 cut(s)	382
AccBSI	CCGCTC	1 cut(s)	291
AccII	CGCG	2 cut(s)	60, 398
AclWI	GGATC	1 cut(s)	850
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	3 cut(s)	123, 253, 491
AfaI	GTAC	1 cut(s)	725
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	3 cut(s)	178, 448, 667
AjiI	CACGTC	1 cut(s)	300
AjnI	CCWGG	2 cut(s)	272, 513
AluBI	AGCT	5 cut(s)	91, 228, 481, 929, 1003
AluI	AGCT	5 cut(s)	91, 228, 481, 929, 1003
Alw26I	GTCTC	4 cut(s)	619, 746, 962, 1014
AlwI	GGATC	1 cut(s)	850
AoxI	GGCC	6 cut(s)	270, 275, 313, 393, 679, 973
ApoI	RAATTY	3 cut(s)	123, 253, 491
AspA2I	CCTAGG	1 cut(s)	761
AspLEI	GCGC	2 cut(s)	60, 993
AspS9I	GGNCC	1 cut(s)	974
AsuHPI	GGTGA	3 cut(s)	327, 553, 1004
AsuII	TTCGAA	1 cut(s)	1025
AvrII	CCTAGG	1 cut(s)	761
BaeGI	GKGCMC	1 cut(s)	387
BanI	GGYRCC	1 cut(s)	382
BanII	GRGCYC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	749
BbvCI	CCTCAGC	1 cut(s)	224
BccI	CCATC	3 cut(s)	638, 797, 943
BceAI	ACGGC	2 cut(s)	328, 943
BciT130I	CCWGG	2 cut(s)	274, 515
BciVI	GTATCC	1 cut(s)	237
BcoDI	GTCTC	4 cut(s)	619, 746, 962, 1014
BfaI	CTAG	1 cut(s)	762
BfuI	GTATCC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	396, 591
BlnI	CCTAGG	1 cut(s)	761
BlsI	GCNGC	2 cut(s)	397, 592
Bme1390I	CCNGG	2 cut(s)	274, 515
BmgBI	CACGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	974
BmiI	GGNNCC	2 cut(s)	384, 519
BmrFI	CCNGG	2 cut(s)	274, 515
BmrI	ACTGGG	1 cut(s)	317
BmsI	GCATC	3 cut(s)	550, 906, 989
BmuI	ACTGGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	749
Bpu10I	CCTNAGC	3 cut(s)	224, 477, 576
Bpu14I	TTCGAA	1 cut(s)	1025
BpuEI	CTTGAG	1 cut(s)	989
BsaI	GGTCTC	2 cut(s)	619, 962
BsaJI	CCNNGG	6 cut(s)	368, 396, 423, 761, 778, 823
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
Bse118I	RCCGGY	2 cut(s)	441, 971
Bse1I	ACTGG	2 cut(s)	252, 323
Bse3DI	GCAATG	1 cut(s)	600
BseBI	CCWGG	2 cut(s)	274, 515
BseDI	CCNNGG	6 cut(s)	368, 396, 423, 761, 778, 823
BseGI	GGATG	3 cut(s)	471, 507, 895
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseMI	GCAATG	1 cut(s)	600
BseMII	CTCAG	4 cut(s)	238, 721, 944, 959
BseNI	ACTGG	2 cut(s)	252, 323
BseSI	GKGCMC	1 cut(s)	387
Bsh1236I	CGCG	2 cut(s)	60, 398
BshFI	GGCC	6 cut(s)	272, 277, 315, 395, 681, 975
BshNI	GGYRCC	1 cut(s)	382
BsiSI	CCGG	2 cut(s)	442, 972
BslI	CCNNNNNNNGG	1 cut(s)	328
BsmAI	GTCTC	4 cut(s)	619, 746, 962, 1014
BsmBI	CGTCTC	1 cut(s)	746
BsmI	GAATGC	3 cut(s)	577, 728, 960
BsnI	GGCC	6 cut(s)	272, 277, 315, 395, 681, 975
Bso31I	GGTCTC	2 cut(s)	619, 962
Bsp119I	TTCGAA	1 cut(s)	1025
Bsp1286I	GDGCHC	2 cut(s)	189, 387
Bsp143I	GATC	4 cut(s)	669, 736, 855, 865
BspANI	GGCC	6 cut(s)	272, 277, 315, 395, 681, 975
BspCNI	CTCAG	4 cut(s)	237, 720, 943, 958
BspFNI	CGCG	2 cut(s)	60, 398
BspLI	GGNNCC	2 cut(s)	384, 519
BspPI	GGATC	1 cut(s)	850
BspQI	GCTCTTC	1 cut(s)	290
BspT104I	TTCGAA	1 cut(s)	1025
BspT107I	GGYRCC	1 cut(s)	382
BspTNI	GGTCTC	2 cut(s)	619, 962
BsrBI	CCGCTC	1 cut(s)	291
BsrDI	GCAATG	1 cut(s)	600
BsrFI	RCCGGY	2 cut(s)	441, 971
BsrI	ACTGG	2 cut(s)	252, 323
BssAI	RCCGGY	2 cut(s)	441, 971
BssECI	CCNNGG	6 cut(s)	368, 396, 423, 761, 778, 823
BssMI	GATC	4 cut(s)	669, 736, 855, 865
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	3 cut(s)	761, 778, 823
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	2 cut(s)	274, 515
Bst4CI	ACNGT	3 cut(s)	354, 376, 1047
Bst6I	CTCTTC	2 cut(s)	290, 1030
BstBI	TTCGAA	1 cut(s)	1025
BstC8I	GCNNGC	1 cut(s)	683
BstDEI	CTNAG	7 cut(s)	224, 477, 576, 604, 707, 930, 945
BstDSI	CCRYGG	1 cut(s)	396
BstF5I	GGATG	3 cut(s)	471, 507, 895
BstFNI	CGCG	2 cut(s)	60, 398
BstHHI	GCGC	2 cut(s)	60, 993
BstKTI	GATC	4 cut(s)	672, 739, 858, 868
BstMAI	GTCTC	4 cut(s)	619, 746, 962, 1014
BstMBI	GATC	4 cut(s)	669, 736, 855, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	2 cut(s)	274, 515
BstSCI	CCNGG	2 cut(s)	272, 513
BstSLI	GKGCMC	1 cut(s)	387
BstUI	CGCG	2 cut(s)	60, 398
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	1 cut(s)	855
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	855
BsuI	GTATCC	1 cut(s)	237
BsuRI	GGCC	6 cut(s)	272, 277, 315, 395, 681, 975
BtgI	CCRYGG	1 cut(s)	396
BtrI	CACGTC	1 cut(s)	300
BtsCI	GGATG	3 cut(s)	471, 507, 895
Cac8I	GCNNGC	1 cut(s)	683
CfoI	GCGC	2 cut(s)	60, 993
Cfr10I	RCCGGY	2 cut(s)	441, 971
Cfr13I	GGNCC	1 cut(s)	974
Cfr42I	CCGCGG	1 cut(s)	399
CseI	GACGC	1 cut(s)	943
CsiI	ACCWGGT	1 cut(s)	513
Csp6I	GTAC	1 cut(s)	724
CviQI	GTAC	1 cut(s)	724
DdeI	CTNAG	7 cut(s)	224, 477, 576, 604, 707, 930, 945
DpnI	GATC	4 cut(s)	671, 738, 857, 867
DpnII	GATC	4 cut(s)	669, 736, 855, 865
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	2 cut(s)	290, 1030
EarI	CTCTTC	2 cut(s)	290, 1030
EciI	GGCGGA	1 cut(s)	330
Eco130I	CCWWGG	3 cut(s)	761, 778, 823
Eco24I	GRGCYC	1 cut(s)	189
Eco31I	GGTCTC	2 cut(s)	619, 962
EcoRI	GAATTC	1 cut(s)	491
EcoRII	CCWGG	2 cut(s)	272, 513
EcoT14I	CCWWGG	3 cut(s)	761, 778, 823
EcoT38I	GRGCYC	1 cut(s)	189
ErhI	CCWWGG	3 cut(s)	761, 778, 823
Esp3I	CGTCTC	1 cut(s)	746
FaiI	YATR	2 cut(s)	94, 819
Fnu4HI	GCNGC	2 cut(s)	396, 591
FokI	GGATG	3 cut(s)	458, 494, 902
FriOI	GRGCYC	1 cut(s)	189
Fsp4HI	GCNGC	2 cut(s)	396, 591
FspBI	CTAG	1 cut(s)	762
FspI	TGCGCA	1 cut(s)	992
GlaI	GCGC	2 cut(s)	59, 992
GluI	GCNGC	2 cut(s)	396, 591
HaeIII	GGCC	6 cut(s)	272, 277, 315, 395, 681, 975
HapII	CCGG	2 cut(s)	442, 972
HgaI	GACGC	1 cut(s)	943
HhaI	GCGC	2 cut(s)	60, 993
Hin6I	GCGC	2 cut(s)	58, 991
HinP1I	GCGC	2 cut(s)	58, 991
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	2 cut(s)	442, 972
HphI	GGTGA	3 cut(s)	327, 553, 1004
Hpy166II	GTNNAC	2 cut(s)	211, 544
Hpy188I	TCNGA	6 cut(s)	424, 710, 902, 933, 948, 965
Hpy188III	TCNNGA	2 cut(s)	634, 667
Hpy8I	GTNNAC	2 cut(s)	211, 544
Hpy99I	CGWCG	3 cut(s)	304, 307, 1047
HpyAV	CCTTC	8 cut(s)	156, 200, 226, 288, 427, 671, 673, 1021
HpyCH4III	ACNGT	3 cut(s)	354, 376, 1047
HpyCH4IV	ACGT	2 cut(s)	40, 299
HpyCH4V	TGCA	2 cut(s)	897, 980
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	7 cut(s)	224, 477, 576, 604, 707, 930, 945
HpySE526I	ACGT	2 cut(s)	40, 299
HspAI	GCGC	2 cut(s)	58, 991
KspI	CCGCGG	1 cut(s)	399
Kzo9I	GATC	4 cut(s)	669, 736, 855, 865
LguI	GCTCTTC	1 cut(s)	290
LweI	GCATC	3 cut(s)	550, 906, 989
MabI	ACCWGGT	1 cut(s)	513
MaeI	CTAG	1 cut(s)	762
MaeII	ACGT	2 cut(s)	40, 299
MaeIII	GTNAC	2 cut(s)	61, 700
MalI	GATC	4 cut(s)	671, 738, 857, 867
MbiI	CCGCTC	1 cut(s)	291
MboI	GATC	4 cut(s)	669, 736, 855, 865
MboII	GAAGA	5 cut(s)	277, 500, 544, 749, 1047
MflI	RGATCY	1 cut(s)	855
MhlI	GDGCHC	2 cut(s)	189, 387
MluCI	AATT	5 cut(s)	123, 253, 317, 491, 814
MmeI	TCCRAC	1 cut(s)	122
MseI	TTAA	3 cut(s)	390, 747, 831
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	398, 986
MspI	CCGG	2 cut(s)	442, 972
MspR9I	CCNGG	2 cut(s)	274, 515
Mva1269I	GAATGC	3 cut(s)	577, 728, 960
MvaI	CCWGG	2 cut(s)	274, 515
MvnI	CGCG	2 cut(s)	60, 398
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	4 cut(s)	669, 736, 855, 865
NlaIV	GGNNCC	2 cut(s)	384, 519
NmuCI	GTSAC	1 cut(s)	700
NsbI	TGCGCA	1 cut(s)	992
NspV	TTCGAA	1 cut(s)	1025
PciSI	GCTCTTC	1 cut(s)	290
PctI	GAATGC	3 cut(s)	577, 728, 960
PfeI	GAWTC	1 cut(s)	468
PkrI	GCNGC	2 cut(s)	397, 592
Psp6I	CCWGG	2 cut(s)	272, 513
PspGI	CCWGG	2 cut(s)	272, 513
PspN4I	GGNNCC	2 cut(s)	384, 519
PspPI	GGNCC	1 cut(s)	974
PsuI	RGATCY	1 cut(s)	855
RsaI	GTAC	1 cut(s)	725
RsaNI	GTAC	1 cut(s)	724
RseI	CAYNNNNRTG	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	399
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	390, 747, 831
SatI	GCNGC	2 cut(s)	396, 591
Sau3AI	GATC	4 cut(s)	669, 736, 855, 865
Sau96I	GGNCC	1 cut(s)	974
ScrFI	CCNGG	2 cut(s)	274, 515
SduI	GDGCHC	2 cut(s)	189, 387
SexAI	ACCWGGT	1 cut(s)	513
SfaNI	GCATC	3 cut(s)	550, 906, 989
Sfr303I	CCGCGG	1 cut(s)	399
SfuI	TTCGAA	1 cut(s)	1025
SgrBI	CCGCGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	5 cut(s)	123, 253, 317, 491, 814
SspMI	CTAG	1 cut(s)	762
StyD4I	CCNGG	2 cut(s)	272, 513
StyI	CCWWGG	3 cut(s)	761, 778, 823
TaaI	ACNGT	3 cut(s)	354, 376, 1047
TaiI	ACGT	2 cut(s)	43, 302
TaqI	TCGA	3 cut(s)	349, 462, 1025
TasI	AATT	5 cut(s)	123, 253, 317, 491, 814
TauI	GCSGC	2 cut(s)	398, 593
TfiI	GAWTC	1 cut(s)	468
Tru1I	TTAA	3 cut(s)	390, 747, 831
Tru9I	TTAA	3 cut(s)	390, 747, 831
TseFI	GTSAC	1 cut(s)	700
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	2 cut(s)	67, 611
TspGWI	ACGGA	4 cut(s)	196, 256, 375, 825
XapI	RAATTY	3 cut(s)	123, 253, 491
XmaJI	CCTAGG	1 cut(s)	761
XspI	CTAG	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.