Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

13185597 .. 13187892

Gene Structure 2296 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGTGCCCTTCAATCCTACGCTCCTCTACGTCGTCGTTTCACGGCCAATTCCCAATTGCGGCTTCGCCGCCGCGGCTGTCGTTCGGAAACCCTAGAAATGTGAGCGTGGTGAAGGCTGCGGAGGTTGTGCTGGTGGAGAAGAGCGAGTCGGAGAAGGTCAGCCGGCTCAAGACGGCTTACCTTGAGAGAATCATCCCCAAGCTCAAAGAAGAGTTTTCATATCGAAACATTCATGAGGTTCCAAAGGTTGAGAAGATTGTGGTGAATTGTGGTATTGGAGATGCGCAGCAGAATGCTAAAGGGTTGGAAGCGGCAATGCGTGACTTGGCGCTCATTACGGGGCAGAGACCTGTGAAGACGCGTGCAAAGGCTTCGCTTGCGCAGTTTAAGATCAGGGAAGGTCAGCCGCTTGGGATTGCTGTGACACTCAGAGGAAATGTGATGTATGCCTTCCTTGATCGCCTCATTAACTTGGGTTTTCCCAGGACAAGGGATTTCCAAGGTCTCAACCCGAACAGCTTTGATGGAAACGGGAATTATGGTGTTGGAATCAAGGAACAGAGTGTGTTCCCGGAGATCAAGTTTGATCTTGGTAAGGGTAGGGGAATGGATGTCTGCATCAAAACAACAGCCAAAACAGATAAAGAAGCACAAACACTCTTGGCTCTAATGGGGATGCCATTCAGAGAGACTGGCCCTGTCACCGAAGTGCGAAAGAAGAAGCTGAGGTCTCACCATTTCAGTCGAAAGGGAACTGGACGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

257

Amino Acids

28.3

Weight (kDa)

10.1

Isoelectric Point (pI)

32.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	77 - 133	1.1e-24	Ribosomal protein L5
Ribosomal_L5_C	PF00673	137 - 229	1.7e-34	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	288, 384
AccII	CGCG	2 cut(s)	76, 364
AciI	CCGC	7 cut(s)	62, 71, 74, 76, 122, 314, 410
AcoI	YGGCCR	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	61, 492
AflIII	ACRYGT	1 cut(s)	362
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	485
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AleI	CACNNNNGTG	1 cut(s)	710
AluBI	AGCT	3 cut(s)	205, 522, 727
AluI	AGCT	3 cut(s)	205, 522, 727
Alw26I	GTCTC	4 cut(s)	343, 512, 686, 738
AoxI	GGCC	2 cut(s)	46, 697
ApeKI	GCWGC	2 cut(s)	119, 289
AspLEI	GCGC	3 cut(s)	289, 334, 385
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	4 cut(s)	124, 277, 697, 728
BaeGI	GKGCMC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	106, 301
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	61, 192
BcgI	CGANNNNNNTGC	2 cut(s)	357, 391
BciT130I	CCWGG	1 cut(s)	487
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	4 cut(s)	343, 512, 686, 738
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	8 cut(s)	63, 71, 74, 77, 120, 290, 315, 410
BlsI	GCNGC	8 cut(s)	64, 72, 75, 78, 121, 291, 316, 411
Bme1390I	CCNGG	2 cut(s)	487, 575
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	487, 575
BmsI	GCATC	3 cut(s)	274, 630, 669
BpiI	GAAGAC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	2 cut(s)	155, 206
BpuMI	CCSGG	1 cut(s)	575
BsaI	GGTCTC	3 cut(s)	343, 512, 738
BsaJI	CCNNGG	3 cut(s)	74, 485, 502
BsaXI	ACNNNNNCTCC	2 cut(s)	569, 599
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 492
Bse118I	RCCGGY	1 cut(s)	165
Bse1I	ACTGG	2 cut(s)	700, 763
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	1 cut(s)	487
BseDI	CCNNGG	3 cut(s)	74, 485, 502
BseGI	GGATG	3 cut(s)	195, 619, 684
BseLI	CCNNNNNNNGG	2 cut(s)	61, 492
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	445, 719
BseNI	ACTGG	2 cut(s)	700, 763
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	106, 301
Bsh1236I	CGCG	2 cut(s)	76, 364
BshFI	GGCC	2 cut(s)	48, 699
BsiSI	CCGG	2 cut(s)	166, 575
BslI	CCNNNNNNNGG	2 cut(s)	61, 492
BsmAI	GTCTC	4 cut(s)	343, 512, 686, 738
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	2 cut(s)	48, 699
Bso31I	GGTCTC	3 cut(s)	343, 512, 738
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	393, 460, 579, 589
BspACI	CCGC	7 cut(s)	62, 71, 74, 76, 122, 314, 410
BspANI	GGCC	2 cut(s)	48, 699
BspCNI	CTCAG	2 cut(s)	444, 720
BspFNI	CGCG	2 cut(s)	76, 364
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	137
BspTNI	GGTCTC	3 cut(s)	343, 512, 738
BsrDI	GCAATG	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	165
BsrI	ACTGG	2 cut(s)	700, 763
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	3 cut(s)	74, 485, 502
BssMI	GATC	4 cut(s)	393, 460, 579, 589
BssT1I	CCWWGG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	487
Bst6I	CTCTTC	2 cut(s)	137, 207
BstC8I	GCNNGC	4 cut(s)	7, 167, 366, 381
BstDEI	CTNAG	2 cut(s)	431, 728
BstDSI	CCRYGG	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	195, 619, 684
BstFNI	CGCG	2 cut(s)	76, 364
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	289, 334, 385
BstKTI	GATC	4 cut(s)	396, 463, 582, 592
BstMAI	GTCTC	4 cut(s)	343, 512, 686, 738
BstMBI	GATC	4 cut(s)	393, 460, 579, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 380
BstNI	CCWGG	1 cut(s)	487
BstSCI	CCNGG	2 cut(s)	485, 573
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	76, 364
BstV1I	GCAGC	2 cut(s)	106, 301
BstV2I	GAAGAC	1 cut(s)	365
BsuRI	GGCC	2 cut(s)	48, 699
BtgI	CCRYGG	1 cut(s)	74
BtsCI	GGATG	3 cut(s)	195, 619, 684
Cac8I	GCNNGC	4 cut(s)	7, 167, 366, 381
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	3 cut(s)	289, 334, 385
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	1 cut(s)	698
Cfr42I	CCGCGG	1 cut(s)	77
CseI	GACGC	1 cut(s)	370
CviAII	CATG	1 cut(s)	236
DdeI	CTNAG	2 cut(s)	431, 728
DpnI	GATC	4 cut(s)	395, 462, 581, 591
DpnII	GATC	4 cut(s)	393, 460, 579, 589
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	137, 207
EarI	CTCTTC	2 cut(s)	137, 207
Eco130I	CCWWGG	1 cut(s)	502
Eco31I	GGTCTC	3 cut(s)	343, 512, 738
EcoRII	CCWGG	1 cut(s)	485
EcoT14I	CCWWGG	1 cut(s)	502
ErhI	CCWWGG	1 cut(s)	502
FaeI	CATG	1 cut(s)	239
FaiI	YATR	4 cut(s)	223, 237, 450, 543
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	8 cut(s)	63, 71, 74, 77, 120, 290, 315, 410
FokI	GGATG	3 cut(s)	182, 626, 691
Fsp4HI	GCNGC	8 cut(s)	63, 71, 74, 77, 120, 290, 315, 410
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	2 cut(s)	288, 384
GlaI	GCGC	3 cut(s)	288, 333, 384
GluI	GCNGC	8 cut(s)	63, 71, 74, 77, 120, 290, 315, 410
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	48, 699
HapII	CCGG	2 cut(s)	166, 575
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	3 cut(s)	289, 334, 385
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	3 cut(s)	287, 332, 383
HinP1I	GCGC	3 cut(s)	287, 332, 383
HinfI	GANTC	3 cut(s)	149, 192, 552
HpaII	CCGG	2 cut(s)	166, 575
HphI	GGTGA	4 cut(s)	124, 277, 697, 728
Hpy188I	TCNGA	4 cut(s)	89, 154, 434, 689
Hpy188III	TCNNGA	2 cut(s)	172, 236
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	5 cut(s)	21, 109, 151, 395, 463
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	368, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 380
HpyF3I	CTNAG	2 cut(s)	431, 728
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	3 cut(s)	287, 332, 383
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
KspI	CCGCGG	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	393, 460, 579, 589
LguI	GCTCTTC	1 cut(s)	137
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	106, 301
LweI	GCATC	3 cut(s)	274, 630, 669
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	323, 424, 703
MalI	GATC	4 cut(s)	395, 462, 581, 591
MboI	GATC	4 cut(s)	393, 460, 579, 589
MboII	GAAGA	5 cut(s)	154, 224, 268, 370, 733
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	50, 57, 268, 538
MluI	ACGCGT	1 cut(s)	362
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	3 cut(s)	132, 288, 529
MnlI	CCTC	6 cut(s)	37, 118, 232, 428, 476, 723
MroNI	GCCGGC	1 cut(s)	165
MseI	TTAA	2 cut(s)	390, 471
MslI	CAYNNNNRTG	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	166, 575
MspR9I	CCNGG	2 cut(s)	487, 575
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	487
MvnI	CGCG	2 cut(s)	76, 364
MwoI	GCNNNNNNNGC	2 cut(s)	76, 380
NaeI	GCCGGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	575
NdeII	GATC	4 cut(s)	393, 460, 579, 589
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	3 cut(s)	323, 424, 703
NsbI	TGCGCA	2 cut(s)	288, 384
OliI	CACNNNNGTG	1 cut(s)	710
PagI	TCATGA	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	137
PctI	GAATGC	1 cut(s)	301
PdiI	GCCGGC	1 cut(s)	167
PfeI	GAWTC	2 cut(s)	192, 552
PfoI	TCCNGGA	1 cut(s)	573
PkrI	GCNGC	8 cut(s)	64, 72, 75, 78, 121, 291, 316, 411
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	485
PspGI	CCWGG	1 cut(s)	485
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	698
RseI	CAYNNNNRTG	1 cut(s)	710
SacII	CCGCGG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	137
SaqAI	TTAA	2 cut(s)	390, 471
SatI	GCNGC	8 cut(s)	63, 71, 74, 77, 120, 290, 315, 410
Sau3AI	GATC	4 cut(s)	393, 460, 579, 589
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	487, 575
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	274, 630, 669
Sfr303I	CCGCGG	1 cut(s)	77
SgrBI	CCGCGG	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	710
SmlI	CTYRAG	2 cut(s)	170, 185
SmoI	CTYRAG	2 cut(s)	170, 185
Sse9I	AATT	4 cut(s)	50, 57, 268, 538
SsiI	CCGC	7 cut(s)	62, 71, 74, 76, 122, 314, 410
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	485, 573
StyI	CCWWGG	1 cut(s)	502
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	2 cut(s)	226, 748
TasI	AATT	4 cut(s)	50, 57, 268, 538
TauI	GCSGC	6 cut(s)	65, 73, 76, 79, 317, 412
TfiI	GAWTC	2 cut(s)	192, 552
Tru1I	TTAA	2 cut(s)	390, 471
Tru9I	TTAA	2 cut(s)	390, 471
TseFI	GTSAC	3 cut(s)	323, 424, 703
TseI	GCWGC	2 cut(s)	119, 289
Tsp45I	GTSAC	3 cut(s)	323, 424, 703
TspDTI	ATGAA	2 cut(s)	210, 224
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.