Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

22131976 .. 22133904

Gene Structure 1929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G175800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCCTGCCCTTCGCTCTTACGCTCTGCCACGTCGTCGTTTCACGGTCAATTCCCAGTTGTTGTGTCACCTCCACCTTTACGACTGTCATACGGAAACCCTAGAAATGGGGGCGGATTGGTGATGCCGGTGAAGGCCTCGGCGGTAGTGCTGGTGGAGAAGTCAGAGGCAGAGAAGGTCAGTCGGCTCAAGACCACTTACCTTGAAAAAATCGTTCCTCAGCTCAAAGAAGAGTTCTCCTACACGAACATCCACCAGGTTCCGAAGATTGAGAAGGTTGTTGTGAACTGCGGTATTGGAGATGCTCAACAGAATGCTAAGGGGTTGGAAGCAGCAATGAATGACTTGGCGCTCATTACTGGGCAGAGACCCATAAAGACACGAGCAAAGGTTTCCCTTGCTACCTTCAAGATCAGGGAAGGCCAGCCACTTGGGATTGCTGTCACACTTAGAGGAAATGTGATGTACTCATTCCTTGATCGGCTGATTAACTTGGGACTTCCTAGGACAAGGGATTTCCAAGGTCTAAACCCAAATAGTTTTGATGGAAACGGGAACTACGCCGTTGGCATTAAGGAACAGAGTGTGTTCCCAGAGATCCGGTTTGATCTTGGTAAGGGCAGGGGAATGGATGTTTGCATTAGAACAACTGCTAAAACAGATAAAGAAGCTCAGACACTTTTGGCTCTGATGGGGATGCCATTCAGAGAGACCGGCCCTGTCAGTGCCGTGCGCAAGAAGAAGCTCAAGTCTCACCATTTCAGTTCAAAGGGAAGAGGACGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

263

Amino Acids

28.69

Weight (kDa)

10.13

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	734
AciI	CCGC	3 cut(s)	114, 143, 291
AclWI	GGATC	1 cut(s)	592
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	107
AgsI	TTSAA	3 cut(s)	206, 409, 768
AjiI	CACGTC	1 cut(s)	33
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	3 cut(s)	223, 671, 745
AluI	AGCT	3 cut(s)	223, 671, 745
Alw26I	GTCTC	3 cut(s)	361, 704, 756
AlwI	GGATC	1 cut(s)	592
AoxI	GGCC	4 cut(s)	3, 135, 421, 715
ApeKI	GCWGC	1 cut(s)	332
AspA2I	CCTAGG	1 cut(s)	503
AspLEI	GCGC	2 cut(s)	352, 735
AspS9I	GGNCC	1 cut(s)	716
AsuHPI	GGTGA	4 cut(s)	60, 133, 142, 746
AvrII	CCTAGG	1 cut(s)	503
BauI	CACGAG	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	2 cut(s)	539, 685
BceAI	ACGGC	2 cut(s)	548, 713
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	3 cut(s)	361, 704, 756
BfaI	CTAG	2 cut(s)	102, 504
BfoI	RGCGCY	1 cut(s)	353
BisI	GCNGC	1 cut(s)	333
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	257
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	716
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	1 cut(s)	257
BmrI	ACTGGG	2 cut(s)	50, 369
BmsI	GCATC	3 cut(s)	114, 292, 687
BmuI	ACTGGG	2 cut(s)	50, 369
Bpu10I	CCTNAGC	2 cut(s)	219, 318
BpuEI	CTTGAG	2 cut(s)	173, 731
BsaI	GGTCTC	2 cut(s)	361, 704
BsaJI	CCNNGG	3 cut(s)	138, 503, 520
BsaWI	WCCGGW	1 cut(s)	600
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	2 cut(s)	127, 713
Bse1I	ACTGG	2 cut(s)	56, 364
Bse3DI	GCAATG	1 cut(s)	342
BseBI	CCWGG	1 cut(s)	257
BseDI	CCNNGG	3 cut(s)	138, 503, 520
BseGI	GGATG	3 cut(s)	249, 637, 702
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	2 cut(s)	233, 686
BseNI	ACTGG	2 cut(s)	56, 364
BseXI	GCAGC	1 cut(s)	344
BshFI	GGCC	4 cut(s)	5, 137, 423, 717
BsiSI	CCGG	3 cut(s)	128, 601, 714
BslFI	GGGAC	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	107
BsmAI	GTCTC	3 cut(s)	361, 704, 756
BsmFI	GGGAC	1 cut(s)	510
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	5, 137, 423, 717
Bso31I	GGTCTC	2 cut(s)	361, 704
Bsp143I	GATC	4 cut(s)	411, 478, 597, 607
BspACI	CCGC	3 cut(s)	114, 143, 291
BspANI	GGCC	4 cut(s)	5, 137, 423, 717
BspCNI	CTCAG	2 cut(s)	232, 685
BspLI	GGNNCC	1 cut(s)	261
BspPI	GGATC	1 cut(s)	592
BspTNI	GGTCTC	2 cut(s)	361, 704
BsrDI	GCAATG	1 cut(s)	342
BsrFI	RCCGGY	2 cut(s)	127, 713
BsrI	ACTGG	2 cut(s)	56, 364
BssAI	RCCGGY	2 cut(s)	127, 713
BssECI	CCNNGG	3 cut(s)	138, 503, 520
BssMI	GATC	4 cut(s)	411, 478, 597, 607
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	503, 520
Bst2BI	CACGAG	1 cut(s)	381
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	2 cut(s)	47, 87
Bst6I	CTCTTC	2 cut(s)	225, 769
BstC8I	GCNNGC	2 cut(s)	7, 425
BstDEI	CTNAG	4 cut(s)	219, 318, 449, 672
BstF5I	GGATG	3 cut(s)	249, 637, 702
BstH2I	RGCGCY	1 cut(s)	353
BstHHI	GCGC	2 cut(s)	352, 735
BstKTI	GATC	4 cut(s)	414, 481, 600, 610
BstMAI	GTCTC	3 cut(s)	361, 704, 756
BstMBI	GATC	4 cut(s)	411, 478, 597, 607
BstNI	CCWGG	1 cut(s)	257
BstSCI	CCNGG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	1 cut(s)	597
BstXI	CCANNNNNNTGG	1 cut(s)	431
BstYI	RGATCY	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	5, 137, 423, 717
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	3 cut(s)	249, 637, 702
BtsIMutI	CAGTG	1 cut(s)	730
Cac8I	GCNNGC	2 cut(s)	7, 425
CfoI	GCGC	2 cut(s)	352, 735
Cfr10I	RCCGGY	2 cut(s)	127, 713
Cfr13I	GGNCC	1 cut(s)	716
CsiI	ACCWGGT	1 cut(s)	255
Csp6I	GTAC	1 cut(s)	466
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	219, 318, 449, 672
DpnI	GATC	4 cut(s)	413, 480, 599, 609
DpnII	GATC	4 cut(s)	411, 478, 597, 607
Eam1104I	CTCTTC	2 cut(s)	225, 769
EarI	CTCTTC	2 cut(s)	225, 769
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	2 cut(s)	503, 520
Eco147I	AGGCCT	1 cut(s)	137
Eco31I	GGTCTC	2 cut(s)	361, 704
EcoRII	CCWGG	1 cut(s)	255
EcoT14I	CCWWGG	2 cut(s)	503, 520
ErhI	CCWWGG	2 cut(s)	503, 520
FaiI	YATR	2 cut(s)	91, 374
FaqI	GGGAC	1 cut(s)	510
Fnu4HI	GCNGC	1 cut(s)	333
FokI	GGATG	3 cut(s)	236, 644, 709
Fsp4HI	GCNGC	1 cut(s)	333
FspBI	CTAG	2 cut(s)	102, 504
FspI	TGCGCA	1 cut(s)	734
GlaI	GCGC	2 cut(s)	351, 734
GluI	GCNGC	1 cut(s)	333
HaeII	RGCGCY	1 cut(s)	353
HaeIII	GGCC	4 cut(s)	5, 137, 423, 717
HapII	CCGG	3 cut(s)	128, 601, 714
HhaI	GCGC	2 cut(s)	352, 735
Hin6I	GCGC	2 cut(s)	350, 733
HinP1I	GCGC	2 cut(s)	350, 733
HpaII	CCGG	3 cut(s)	128, 601, 714
HphI	GGTGA	4 cut(s)	60, 133, 142, 746
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	5 cut(s)	166, 264, 675, 690, 707
Hpy188III	TCNNGA	2 cut(s)	190, 409
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	6 cut(s)	21, 127, 169, 268, 413, 415
HpyCH4III	ACNGT	2 cut(s)	47, 87
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	639
HpyF3I	CTNAG	4 cut(s)	219, 318, 449, 672
HpySE526I	ACGT	1 cut(s)	32
HspAI	GCGC	2 cut(s)	350, 733
Kzo9I	GATC	4 cut(s)	411, 478, 597, 607
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	3 cut(s)	114, 292, 687
MabI	ACCWGGT	1 cut(s)	255
MaeI	CTAG	2 cut(s)	102, 504
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	66, 442
MalI	GATC	4 cut(s)	413, 480, 599, 609
MboI	GATC	4 cut(s)	411, 478, 597, 607
MboII	GAAGA	4 cut(s)	242, 277, 751, 786
MflI	RGATCY	1 cut(s)	597
MluCI	AATT	1 cut(s)	50
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	6 cut(s)	81, 148, 160, 228, 446, 770
MseI	TTAA	2 cut(s)	489, 573
MspI	CCGG	3 cut(s)	128, 601, 714
MspR9I	CCNGG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	257
NdeII	GATC	4 cut(s)	411, 478, 597, 607
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	119
NmuCI	GTSAC	2 cut(s)	66, 442
NsbI	TGCGCA	1 cut(s)	734
PceI	AGGCCT	1 cut(s)	137
PctI	GAATGC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	255
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	597
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SaqAI	TTAA	2 cut(s)	489, 573
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	411, 478, 597, 607
Sau96I	GGNCC	1 cut(s)	716
ScrFI	CCNGG	1 cut(s)	257
SexAI	ACCWGGT	1 cut(s)	255
SfaNI	GCATC	3 cut(s)	114, 292, 687
SmlI	CTYRAG	2 cut(s)	188, 746
SmoI	CTYRAG	2 cut(s)	188, 746
Sse9I	AATT	1 cut(s)	50
SseBI	AGGCCT	1 cut(s)	137
SsiI	CCGC	3 cut(s)	114, 143, 291
SspMI	CTAG	2 cut(s)	102, 504
StuI	AGGCCT	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	255
StyI	CCWWGG	2 cut(s)	503, 520
TaaI	ACNGT	2 cut(s)	47, 87
TaiI	ACGT	1 cut(s)	35
TasI	AATT	1 cut(s)	50
TatI	WGTACW	1 cut(s)	465
Tru1I	TTAA	2 cut(s)	489, 573
Tru9I	TTAA	2 cut(s)	489, 573
TscAI	CASTG	1 cut(s)	730
TseFI	GTSAC	2 cut(s)	66, 442
TseI	GCWGC	1 cut(s)	332
Tsp45I	GTSAC	2 cut(s)	66, 442
TspDTI	ATGAA	1 cut(s)	353
TspGWI	ACGGA	1 cut(s)	108
TspRI	CASTG	1 cut(s)	730
XmaJI	CCTAGG	1 cut(s)	503
XspI	CTAG	2 cut(s)	102, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.