Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

51765348 .. 51767482

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG253700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGCGTGCCCTTCGCTCTTACGCTCCTCTACGTCGTCGTTTCACGGCCAATTCCCAATTGCAGCTTCGCCTCCGCGGCTGGCGTTCGGAAACCCTAGAAATGTGAGCGTGGTGAAGGCCGCGGAGGTTGTGCTGGTGGAGAAGACGGAGTCGGATAAGGTCAATCGGCTCAAGACGGCTTACCTTGAGAGAATCATCCCTAAGCTCAAAGAAGAGTTCTCATACCAGAACATCCATGAGGTTCCGAAGGTTGAGAAGGTTGTGGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCTAAGGGATTGGAAGCAGCGATGCGTGACCTGGCGCTCATTACAGGGCAGAGACCTGTGAAGACAAGAGCAAAGGCTTCCCTTGCGCAGTTTAAGATCAGGGAAGGTCAGCCACTTGGGATTGCTGTCACACTCAGAGGAAATGTGATGTACGCATTCCTTGATCGGCTCATTAACTTGGGTTTTCCCAGGACAAGGGATTTTCAAGGTCTCAACCCGAACAGCTTTGATGGAAACGGTAATTATGGTGTTGGAATTAAGGAACAGAGTGTGTTCCCAGAGATCAAGTTTGATCTGGGTAAGGGCAGGGGAATGGATGTTTGCATCAAAACAACAGCTAAAACAGATAAAGAAGCTCAGACACTTTTGGCTCTAATGGGAATGCCATTCAGAGAGACTGGCCCAGTAACCGAAGTGCGCAAGAAGAAGCTGAGGTCTCACCATTTCAGTCGAAAGGGAGGTGGAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

256

Amino Acids

28.22

Weight (kDa)

10.04

Isoelectric Point (pI)

31.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	77 - 133	1.3e-24	Ribosomal protein L5
Ribosomal_L5_C	PF00673	137 - 229	1.7e-34	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	384, 716
AccII	CGCG	2 cut(s)	76, 122
AciI	CCGC	4 cut(s)	74, 76, 120, 122
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	492
AgsI	TTSAA	1 cut(s)	503
AjnI	CCWGG	2 cut(s)	327, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	6 cut(s)	65, 205, 522, 635, 653, 727
AluI	AGCT	6 cut(s)	65, 205, 522, 635, 653, 727
Alw26I	GTCTC	4 cut(s)	343, 512, 686, 738
AoxI	GGCC	3 cut(s)	46, 117, 697
ApeKI	GCWGC	2 cut(s)	62, 314
AspLEI	GCGC	3 cut(s)	334, 385, 717
AspS9I	GGNCC	1 cut(s)	698
AsuHPI	GGTGA	3 cut(s)	124, 277, 728
BaeGI	GKGCMC	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	149, 365
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	74, 326
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	61, 192
BciT130I	CCWGG	2 cut(s)	329, 487
BcoDI	GTCTC	4 cut(s)	343, 512, 686, 738
BfaI	CTAG	1 cut(s)	96
BfoI	RGCGCY	1 cut(s)	335
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	4 cut(s)	63, 77, 120, 315
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	4 cut(s)	64, 78, 121, 316
Bme1390I	CCNGG	2 cut(s)	329, 487
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	2 cut(s)	329, 487
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	274, 309, 630
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	2 cut(s)	149, 365
Bpu10I	CCTNAGC	3 cut(s)	201, 300, 728
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	155, 206
BsaI	GGTCTC	3 cut(s)	343, 512, 738
BsaJI	CCNNGG	3 cut(s)	74, 120, 485
Bsc4I	CCNNNNNNNGG	1 cut(s)	492
Bse1I	ACTGG	2 cut(s)	700, 701
BseBI	CCWGG	2 cut(s)	329, 487
BseDI	CCNNGG	3 cut(s)	74, 120, 485
BseGI	GGATG	3 cut(s)	195, 231, 619
BseLI	CCNNNNNNNGG	1 cut(s)	492
BseMII	CTCAG	4 cut(s)	302, 445, 668, 719
BseNI	ACTGG	2 cut(s)	700, 701
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	74, 326
Bsh1236I	CGCG	2 cut(s)	76, 122
BshFI	GGCC	3 cut(s)	48, 119, 699
BslI	CCNNNNNNNGG	1 cut(s)	492
BsmAI	GTCTC	4 cut(s)	343, 512, 686, 738
BsmI	GAATGC	3 cut(s)	301, 452, 684
BsnI	GGCC	3 cut(s)	48, 119, 699
Bso31I	GGTCTC	3 cut(s)	343, 512, 738
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	393, 460, 579, 589
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	4 cut(s)	74, 76, 120, 122
BspANI	GGCC	3 cut(s)	48, 119, 699
BspCNI	CTCAG	4 cut(s)	301, 444, 667, 720
BspFNI	CGCG	2 cut(s)	76, 122
BspLI	GGNNCC	1 cut(s)	243
BspTNI	GGTCTC	3 cut(s)	343, 512, 738
BsrI	ACTGG	2 cut(s)	700, 701
BssECI	CCNNGG	3 cut(s)	74, 120, 485
BssMI	GATC	4 cut(s)	393, 460, 579, 589
Bst2UI	CCWGG	2 cut(s)	329, 487
Bst4CI	ACNGT	2 cut(s)	272, 536
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	7, 81
BstDEI	CTNAG	6 cut(s)	201, 288, 300, 431, 654, 728
BstDSI	CCRYGG	2 cut(s)	74, 120
BstF5I	GGATG	3 cut(s)	195, 231, 619
BstFNI	CGCG	2 cut(s)	76, 122
BstH2I	RGCGCY	1 cut(s)	335
BstHHI	GCGC	3 cut(s)	334, 385, 717
BstKTI	GATC	4 cut(s)	396, 463, 582, 592
BstMAI	GTCTC	4 cut(s)	343, 512, 686, 738
BstMBI	GATC	4 cut(s)	393, 460, 579, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 380
BstNI	CCWGG	2 cut(s)	329, 487
BstSCI	CCNGG	2 cut(s)	327, 485
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	76, 122
BstV1I	GCAGC	2 cut(s)	74, 326
BstV2I	GAAGAC	2 cut(s)	149, 365
BsuRI	GGCC	3 cut(s)	48, 119, 699
BtgI	CCRYGG	2 cut(s)	74, 120
BtgZI	GCGATG	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	195, 231, 619
Cac8I	GCNNGC	2 cut(s)	7, 81
CfoI	GCGC	3 cut(s)	334, 385, 717
Cfr13I	GGNCC	1 cut(s)	698
Cfr42I	CCGCGG	2 cut(s)	77, 123
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	1 cut(s)	236
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	6 cut(s)	201, 288, 300, 431, 654, 728
DpnI	GATC	4 cut(s)	395, 462, 581, 591
DpnII	GATC	4 cut(s)	393, 460, 579, 589
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	3 cut(s)	343, 512, 738
EcoRII	CCWGG	2 cut(s)	327, 485
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	223, 237, 543
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	63, 77, 120, 315
FokI	GGATG	3 cut(s)	182, 218, 626
Fsp4HI	GCNGC	4 cut(s)	63, 77, 120, 315
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	2 cut(s)	384, 716
GlaI	GCGC	3 cut(s)	333, 384, 716
GluI	GCNGC	4 cut(s)	63, 77, 120, 315
HaeII	RGCGCY	1 cut(s)	335
HaeIII	GGCC	3 cut(s)	48, 119, 699
HhaI	GCGC	3 cut(s)	334, 385, 717
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	3 cut(s)	332, 383, 715
HinP1I	GCGC	3 cut(s)	332, 383, 715
HinfI	GANTC	2 cut(s)	149, 192
HphI	GGTGA	3 cut(s)	124, 277, 728
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	6 cut(s)	89, 154, 246, 434, 657, 689
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	5 cut(s)	21, 109, 241, 250, 395
HpyCH4III	ACNGT	2 cut(s)	272, 536
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	62, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 380
HpyF3I	CTNAG	6 cut(s)	201, 288, 300, 431, 654, 728
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	3 cut(s)	332, 383, 715
KspI	CCGCGG	2 cut(s)	77, 123
Kzo9I	GATC	4 cut(s)	393, 460, 579, 589
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	74, 326
LweI	GCATC	3 cut(s)	274, 309, 630
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	3 cut(s)	323, 424, 703
MalI	GATC	4 cut(s)	395, 462, 581, 591
MboI	GATC	4 cut(s)	393, 460, 579, 589
MboII	GAAGA	4 cut(s)	154, 224, 370, 733
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	50, 57, 538, 552
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	132, 529
MnlI	CCTC	7 cut(s)	37, 81, 118, 232, 428, 723, 749
MseI	TTAA	3 cut(s)	390, 471, 555
MspA1I	CMGCKG	2 cut(s)	76, 122
MspR9I	CCNGG	2 cut(s)	329, 487
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	3 cut(s)	301, 452, 684
MvaI	CCWGG	2 cut(s)	329, 487
MvnI	CGCG	2 cut(s)	76, 122
MwoI	GCNNNNNNNGC	2 cut(s)	76, 380
NdeII	GATC	4 cut(s)	393, 460, 579, 589
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	323, 424
NsbI	TGCGCA	2 cut(s)	384, 716
PctI	GAATGC	3 cut(s)	301, 452, 684
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	64, 78, 121, 316
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	327, 485
PspGI	CCWGG	2 cut(s)	327, 485
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	698
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacII	CCGCGG	2 cut(s)	77, 123
SaqAI	TTAA	3 cut(s)	390, 471, 555
SatI	GCNGC	4 cut(s)	63, 77, 120, 315
Sau3AI	GATC	4 cut(s)	393, 460, 579, 589
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	2 cut(s)	329, 487
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	3 cut(s)	274, 309, 630
Sfr303I	CCGCGG	2 cut(s)	77, 123
SgrBI	CCGCGG	2 cut(s)	77, 123
SmlI	CTYRAG	2 cut(s)	170, 185
SmoI	CTYRAG	2 cut(s)	170, 185
Sse9I	AATT	4 cut(s)	50, 57, 538, 552
SsiI	CCGC	4 cut(s)	74, 76, 120, 122
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	327, 485
TaaI	ACNGT	2 cut(s)	272, 536
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	748
TasI	AATT	4 cut(s)	50, 57, 538, 552
TauI	GCSGC	2 cut(s)	79, 122
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	390, 471, 555
Tru9I	TTAA	3 cut(s)	390, 471, 555
TseFI	GTSAC	2 cut(s)	323, 424
TseI	GCWGC	2 cut(s)	62, 314
Tsp45I	GTSAC	2 cut(s)	323, 424
TspGWI	ACGGA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	148
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.