Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

49888047 .. 49890180

Gene Structure 2134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G023870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCGTGCCCTTCGCTCTTACGCTCCTCTACGTCGTCGTTTCACGGCCAATTCCCAATTGCAGCTTCGCCTCCGCGGCTGGCGTTCGGAAACCCTAGAAATGTGAGCGTGGTGAAGGCCGCGGAGGTTGTGCTGGTGGAGAAGACGGAGTCGGAGAAGGTCAATCGGCTCAAGACGGCTTACCTTGAGAGAATCATCCCTAAGCTCAAAGAAGAGTTCTCATACCAGAACATCCATGAGGTTCCGAAGGTTGAGAAGGTTGTGGTGAACTGTGGTATTGGAGATGCTCAGCAGAATGCTAAGGGATTGGAAGCAGCGATACCTGTGAAGACAAGAGCAAAGGCTTCCCTTGCGCAGTTTAAGATCAGGGAAGGTCAGCCACTTGGGATTGCTGTCACACTCAGAGGAAATGTGATGTACGCATTCCTTGATCGGCTCATTAACTTGGGTTTTCCCAGGACAAGGGATTTTCAAGGTCTCAACCCGAACAGCTTTGATGGAAACGGTAATTATGGTGTTGGAATTAAGGAACAGAGTGTGTTCCCAGAGATCAAGTTTGATCTGGGTAAGGGCAGGGGAATGGATGTTTGCATCAAAACAACAGCTAAAACAGATAAAGAAGCTCAGACACTTTTGGCTCTAATGGGAATGCCATTCAGAGAGACTGGCCCAGTAACCGAAGTGCGCAAGAAGAAGCTGAGGTCTCACCATTTCAGTCGAAAGGGAGGTGGAAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

246

Amino Acids

27.1

Weight (kDa)

9.98

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L5	PF00281	77 - 123	1.5e-10	Ribosomal protein L5
Ribosomal_L5_C	PF00673	127 - 219	1.6e-34	ribosomal L5P family C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	354, 686
AccII	CGCG	2 cut(s)	76, 122
AciI	CCGC	4 cut(s)	74, 76, 120, 122
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	473
AjnI	CCWGG	1 cut(s)	455
AjuI	GAANNNNNNNTTGG	2 cut(s)	49, 81
AluBI	AGCT	6 cut(s)	65, 205, 492, 605, 623, 697
AluI	AGCT	6 cut(s)	65, 205, 492, 605, 623, 697
Alw26I	GTCTC	3 cut(s)	482, 656, 708
AoxI	GGCC	3 cut(s)	46, 117, 667
ApeKI	GCWGC	2 cut(s)	62, 314
AspLEI	GCGC	2 cut(s)	355, 687
AspS9I	GGNCC	1 cut(s)	668
AsuHPI	GGTGA	3 cut(s)	124, 277, 698
BaeGI	GKGCMC	1 cut(s)	11
BarI	GAAGNNNNNNTAC	2 cut(s)	303, 335
BbsI	GAAGAC	2 cut(s)	149, 335
BbvCI	CCTCAGC	1 cut(s)	698
BbvI	GCAGC	2 cut(s)	74, 326
BccI	CCATC	1 cut(s)	491
BceAI	ACGGC	2 cut(s)	61, 192
BciT130I	CCWGG	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	482, 656, 708
BfaI	CTAG	1 cut(s)	96
BglI	GCCNNNNNGGC	1 cut(s)	76
BisI	GCNGC	4 cut(s)	63, 77, 120, 315
BlpI	GCTNAGC	1 cut(s)	288
BlsI	GCNGC	4 cut(s)	64, 78, 121, 316
Bme1390I	CCNGG	1 cut(s)	457
BmgT120I	GGNCC	1 cut(s)	668
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	457
BmrI	ACTGGG	1 cut(s)	665
BmsI	GCATC	2 cut(s)	274, 600
BmuI	ACTGGG	1 cut(s)	665
BpiI	GAAGAC	2 cut(s)	149, 335
Bpu10I	CCTNAGC	3 cut(s)	201, 300, 698
Bpu1102I	GCTNAGC	1 cut(s)	288
BpuEI	CTTGAG	2 cut(s)	155, 206
BsaI	GGTCTC	2 cut(s)	482, 708
BsaJI	CCNNGG	3 cut(s)	74, 120, 455
Bsc4I	CCNNNNNNNGG	1 cut(s)	462
Bse1I	ACTGG	2 cut(s)	670, 671
BseBI	CCWGG	1 cut(s)	457
BseDI	CCNNGG	3 cut(s)	74, 120, 455
BseGI	GGATG	3 cut(s)	195, 231, 589
BseLI	CCNNNNNNNGG	1 cut(s)	462
BseMII	CTCAG	4 cut(s)	302, 415, 638, 689
BseNI	ACTGG	2 cut(s)	670, 671
BseRI	GAGGAG	1 cut(s)	16
BseSI	GKGCMC	1 cut(s)	11
BseXI	GCAGC	2 cut(s)	74, 326
Bsh1236I	CGCG	2 cut(s)	76, 122
BshFI	GGCC	3 cut(s)	48, 119, 669
BslI	CCNNNNNNNGG	1 cut(s)	462
BsmAI	GTCTC	3 cut(s)	482, 656, 708
BsmI	GAATGC	3 cut(s)	301, 422, 654
BsnI	GGCC	3 cut(s)	48, 119, 669
Bso31I	GGTCTC	2 cut(s)	482, 708
Bsp1286I	GDGCHC	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	363, 430, 549, 559
Bsp1720I	GCTNAGC	1 cut(s)	288
BspACI	CCGC	4 cut(s)	74, 76, 120, 122
BspANI	GGCC	3 cut(s)	48, 119, 669
BspCNI	CTCAG	4 cut(s)	301, 414, 637, 690
BspFNI	CGCG	2 cut(s)	76, 122
BspLI	GGNNCC	1 cut(s)	243
BspTNI	GGTCTC	2 cut(s)	482, 708
BsrI	ACTGG	2 cut(s)	670, 671
BssECI	CCNNGG	3 cut(s)	74, 120, 455
BssMI	GATC	4 cut(s)	363, 430, 549, 559
Bst2UI	CCWGG	1 cut(s)	457
Bst4CI	ACNGT	2 cut(s)	272, 506
Bst6I	CTCTTC	1 cut(s)	207
BstC8I	GCNNGC	2 cut(s)	7, 81
BstDEI	CTNAG	6 cut(s)	201, 288, 300, 401, 624, 698
BstDSI	CCRYGG	2 cut(s)	74, 120
BstF5I	GGATG	3 cut(s)	195, 231, 589
BstFNI	CGCG	2 cut(s)	76, 122
BstHHI	GCGC	2 cut(s)	355, 687
BstKTI	GATC	4 cut(s)	366, 433, 552, 562
BstMAI	GTCTC	3 cut(s)	482, 656, 708
BstMBI	GATC	4 cut(s)	363, 430, 549, 559
BstMWI	GCNNNNNNNGC	2 cut(s)	76, 350
BstNI	CCWGG	1 cut(s)	457
BstSCI	CCNGG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	11
BstUI	CGCG	2 cut(s)	76, 122
BstV1I	GCAGC	2 cut(s)	74, 326
BstV2I	GAAGAC	2 cut(s)	149, 335
BsuRI	GGCC	3 cut(s)	48, 119, 669
BtgI	CCRYGG	2 cut(s)	74, 120
BtsCI	GGATG	3 cut(s)	195, 231, 589
Cac8I	GCNNGC	2 cut(s)	7, 81
CfoI	GCGC	2 cut(s)	355, 687
Cfr13I	GGNCC	1 cut(s)	668
Cfr42I	CCGCGG	2 cut(s)	77, 123
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	1 cut(s)	236
CviQI	GTAC	1 cut(s)	418
DdeI	CTNAG	6 cut(s)	201, 288, 300, 401, 624, 698
DpnI	GATC	4 cut(s)	365, 432, 551, 561
DpnII	GATC	4 cut(s)	363, 430, 549, 559
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	2 cut(s)	482, 708
EcoRII	CCWGG	1 cut(s)	455
FaeI	CATG	1 cut(s)	239
FaiI	YATR	3 cut(s)	223, 237, 513
FatI	CATG	1 cut(s)	235
Fnu4HI	GCNGC	4 cut(s)	63, 77, 120, 315
FokI	GGATG	3 cut(s)	182, 218, 596
Fsp4HI	GCNGC	4 cut(s)	63, 77, 120, 315
FspBI	CTAG	1 cut(s)	96
FspI	TGCGCA	2 cut(s)	354, 686
GlaI	GCGC	2 cut(s)	354, 686
GluI	GCNGC	4 cut(s)	63, 77, 120, 315
HaeIII	GGCC	3 cut(s)	48, 119, 669
HhaI	GCGC	2 cut(s)	355, 687
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	2 cut(s)	353, 685
HinP1I	GCGC	2 cut(s)	353, 685
HinfI	GANTC	2 cut(s)	149, 192
HphI	GGTGA	3 cut(s)	124, 277, 698
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	6 cut(s)	89, 154, 246, 404, 627, 659
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	6 cut(s)	21, 109, 151, 241, 250, 365
HpyCH4III	ACNGT	2 cut(s)	272, 506
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	2 cut(s)	62, 591
HpyF10VI	GCNNNNNNNGC	2 cut(s)	76, 350
HpyF3I	CTNAG	6 cut(s)	201, 288, 300, 401, 624, 698
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	2 cut(s)	353, 685
KspI	CCGCGG	2 cut(s)	77, 123
Kzo9I	GATC	4 cut(s)	363, 430, 549, 559
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	2 cut(s)	74, 326
LweI	GCATC	2 cut(s)	274, 600
MaeI	CTAG	1 cut(s)	96
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	2 cut(s)	394, 673
MalI	GATC	4 cut(s)	365, 432, 551, 561
MboI	GATC	4 cut(s)	363, 430, 549, 559
MboII	GAAGA	4 cut(s)	154, 224, 340, 703
MfeI	CAATTG	1 cut(s)	57
MhlI	GDGCHC	1 cut(s)	11
MluCI	AATT	4 cut(s)	50, 57, 508, 522
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	2 cut(s)	132, 499
MnlI	CCTC	7 cut(s)	37, 81, 118, 232, 398, 693, 719
MseI	TTAA	3 cut(s)	360, 441, 525
MspA1I	CMGCKG	2 cut(s)	76, 122
MspR9I	CCNGG	1 cut(s)	457
MunI	CAATTG	1 cut(s)	57
Mva1269I	GAATGC	3 cut(s)	301, 422, 654
MvaI	CCWGG	1 cut(s)	457
MvnI	CGCG	2 cut(s)	76, 122
MwoI	GCNNNNNNNGC	2 cut(s)	76, 350
NdeII	GATC	4 cut(s)	363, 430, 549, 559
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	1 cut(s)	243
NmuCI	GTSAC	1 cut(s)	394
NsbI	TGCGCA	2 cut(s)	354, 686
PctI	GAATGC	3 cut(s)	301, 422, 654
PfeI	GAWTC	1 cut(s)	192
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	64, 78, 121, 316
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	455
PspN4I	GGNNCC	1 cut(s)	243
PspPI	GGNCC	1 cut(s)	668
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SacII	CCGCGG	2 cut(s)	77, 123
SaqAI	TTAA	3 cut(s)	360, 441, 525
SatI	GCNGC	4 cut(s)	63, 77, 120, 315
Sau3AI	GATC	4 cut(s)	363, 430, 549, 559
Sau96I	GGNCC	1 cut(s)	668
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	457
SduI	GDGCHC	1 cut(s)	11
SfaNI	GCATC	2 cut(s)	274, 600
Sfr303I	CCGCGG	2 cut(s)	77, 123
SgrBI	CCGCGG	2 cut(s)	77, 123
SmlI	CTYRAG	2 cut(s)	170, 185
SmoI	CTYRAG	2 cut(s)	170, 185
Sse9I	AATT	4 cut(s)	50, 57, 508, 522
SsiI	CCGC	4 cut(s)	74, 76, 120, 122
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	455
TaaI	ACNGT	2 cut(s)	272, 506
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	718
TasI	AATT	4 cut(s)	50, 57, 508, 522
TauI	GCSGC	2 cut(s)	79, 122
TfiI	GAWTC	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	360, 441, 525
Tru9I	TTAA	3 cut(s)	360, 441, 525
TseFI	GTSAC	1 cut(s)	394
TseI	GCWGC	2 cut(s)	62, 314
Tsp45I	GTSAC	1 cut(s)	394
TspGWI	ACGGA	1 cut(s)	161
Tth111I	GACNNNGTC	1 cut(s)	148
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.