Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0014225

Physical Location & Seq

Genomic Coordinates Reverse (-)

10685314 .. 10687480

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g09900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGCCTGCCCTTCGCTCTTACGCTCCGCCACGTCGTCGTTTCACGGCCAATTCCCGGTTGCCGTTTCACCTCCGCCTTTACGACTTTCGTACGGAAACCCTAGGAATGTGGTGGTGCCGGTGAAGGCCGCGGAGGTGGTGCTGGTGGAGAAGTCGGAGGCAGAAAAGGTCAGCCGGCTCAAAACCACTTACCTTGAAAGAATCATCCCTAAGCTCAAAGAAGAGTTCTCTTACACCAACATCCACGAGGTTCCGAAGATTGAGAAGATTGTGGTGAACTGCGGAATTGGAGATGCTCAACAGAATGCTAAGGGATTGGAAGCGGCAATGAATGACTTGGCACTCATTACGGGGCAGAGACCCGTCAAGACACGAGCAAAGGTTTCCCTTGCTACCTTCAAGATCAGGGATCGCCAGCCACTTGGGATTGCTGTCACACTCAGAGGAAATGTGATGTATGCATTCCTTGATCGTCTCATTAATCTGGGACTTCCTAGGACAAGGGATTTCCAAGGTGTAAACCCAAATAGTTTTGATGGAAACGGGAATTATGCCCTTGGAATCAAGGAACAGAGTGTGTTCCCAGAGATTCGGTTTGATCTTGGTAAGGGCAGGGGAATGGATGTTTGCATCAGAACAACTGCTAAAACAGATAAAGAAGCTCAGATGCTTTTGGCTCTAATGGGGATGCCGTTCAGAGAGACCGGCCCTGCATCAGCGGTGCGCAAGAAGAAGCTCAAGTCTCACCATTTCAGTTCGAAGGGTGGAAGAGGACGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009719 GO:0009725 GO:0009735 GO:0009941 GO:0009987 GO:0010033 GO:0010467 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0031967 GO:0031975 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0065003 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L5 Ribosomal_L5_C

Protein Analysis

261

Amino Acids

28.66

Weight (kDa)

10.13

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014225)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01310
fragaria_vesca	FvH4_7g15110
malus_domestica	MD01G1069800.v1.1 MD07G1132700.v1.1
prunus_persica	Prupe.2G175800_v2.0.a1
pyrus_communis	pycom01g09900 pycom07g12950
rosa_chinensis	RchiOBHm_Chr1g0357301
rosa_laevigata	RLG00000028029
rosa_multiflora	Rmu_sc0000316.1_g000003 Rmu_sc0011531.1_g000004
rosa_roxburghii	Rroxscaffold_4G00298870
rosa_rugosa	Rorug01G0256200
rosa_samantha	Rh1CG253700 Rh1DG265300
rosa_wichuraiana	Rw1G023870 Rw1G023990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	725
AccB1I	GGYRCC	1 cut(s)	115
AccII	CGCG	1 cut(s)	131
AciI	CCGC	7 cut(s)	27, 74, 129, 131, 282, 323, 719
AclWI	GGATC	1 cut(s)	417
AcoI	YGGCCR	1 cut(s)	46
AfaI	GTAC	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	197, 400
AjiI	CACGTC	1 cut(s)	33
AluBI	AGCT	3 cut(s)	214, 662, 736
AluI	AGCT	3 cut(s)	214, 662, 736
Alw26I	GTCTC	4 cut(s)	352, 479, 695, 747
AlwI	GGATC	1 cut(s)	417
AoxI	GGCC	4 cut(s)	3, 46, 126, 706
AseI	ATTAAT	1 cut(s)	480
AspA2I	CCTAGG	2 cut(s)	101, 494
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	1 cut(s)	707
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	4 cut(s)	60, 133, 286, 737
AsuII	TTCGAA	1 cut(s)	758
AvrII	CCTAGG	2 cut(s)	101, 494
BanI	GGYRCC	1 cut(s)	115
BauI	CACGAG	2 cut(s)	245, 372
BccI	CCATC	1 cut(s)	530
BceAI	ACGGC	3 cut(s)	47, 61, 676
BcnI	CCSGG	1 cut(s)	56
BcoDI	GTCTC	4 cut(s)	352, 479, 695, 747
BfaI	CTAG	2 cut(s)	102, 495
BisI	GCNGC	2 cut(s)	129, 324
BlnI	CCTAGG	2 cut(s)	101, 494
BlsI	GCNGC	2 cut(s)	130, 325
Bme1390I	CCNGG	1 cut(s)	56
BmgBI	CACGTC	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	2 cut(s)	117, 252
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	5 cut(s)	283, 639, 657, 678, 722
Bpu10I	CCTNAGC	2 cut(s)	210, 309
Bpu14I	TTCGAA	1 cut(s)	758
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	352, 695
BsaJI	CCNNGG	5 cut(s)	101, 129, 494, 511, 556
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse118I	RCCGGY	3 cut(s)	118, 174, 704
Bse3DI	GCAATG	1 cut(s)	333
BseDI	CCNNGG	5 cut(s)	101, 129, 494, 511, 556
BseGI	GGATG	4 cut(s)	204, 240, 628, 693
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	333
BseMII	CTCAG	2 cut(s)	454, 677
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	5, 48, 128, 708
BshNI	GGYRCC	1 cut(s)	115
BsiSI	CCGG	4 cut(s)	56, 119, 175, 705
BsiWI	CGTACG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	4 cut(s)	352, 479, 695, 747
BsmBI	CGTCTC	1 cut(s)	479
BsmFI	GGGAC	1 cut(s)	501
BsmI	GAATGC	2 cut(s)	310, 461
BsnI	GGCC	4 cut(s)	5, 48, 128, 708
Bso31I	GGTCTC	2 cut(s)	352, 695
Bsp119I	TTCGAA	1 cut(s)	758
Bsp143I	GATC	4 cut(s)	402, 409, 469, 598
BspACI	CCGC	7 cut(s)	27, 74, 129, 131, 282, 323, 719
BspANI	GGCC	4 cut(s)	5, 48, 128, 708
BspCNI	CTCAG	2 cut(s)	453, 676
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	117, 252
BspPI	GGATC	1 cut(s)	417
BspT104I	TTCGAA	1 cut(s)	758
BspT107I	GGYRCC	1 cut(s)	115
BspTNI	GGTCTC	2 cut(s)	352, 695
BsrDI	GCAATG	1 cut(s)	333
BsrFI	RCCGGY	3 cut(s)	118, 174, 704
BssAI	RCCGGY	3 cut(s)	118, 174, 704
BssECI	CCNNGG	5 cut(s)	101, 129, 494, 511, 556
BssMI	GATC	4 cut(s)	402, 409, 469, 598
BssSI	CACGAG	2 cut(s)	245, 372
BssT1I	CCWWGG	4 cut(s)	101, 494, 511, 556
Bst2BI	CACGAG	2 cut(s)	245, 372
Bst6I	CTCTTC	2 cut(s)	216, 763
BstBI	TTCGAA	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	7, 176, 416
BstDEI	CTNAG	4 cut(s)	210, 309, 440, 663
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	4 cut(s)	204, 240, 628, 693
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	4 cut(s)	405, 412, 472, 601
BstMAI	GTCTC	4 cut(s)	352, 479, 695, 747
BstMBI	GATC	4 cut(s)	402, 409, 469, 598
BstSCI	CCNGG	1 cut(s)	54
BstUI	CGCG	1 cut(s)	131
BstXI	CCANNNNNNTGG	1 cut(s)	422
BsuRI	GGCC	4 cut(s)	5, 48, 128, 708
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	33
BtsCI	GGATG	4 cut(s)	204, 240, 628, 693
Cac8I	GCNNGC	3 cut(s)	7, 176, 416
CfoI	GCGC	1 cut(s)	726
Cfr10I	RCCGGY	3 cut(s)	118, 174, 704
Cfr13I	GGNCC	1 cut(s)	707
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	91
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	4 cut(s)	210, 309, 440, 663
DpnI	GATC	4 cut(s)	404, 411, 471, 600
DpnII	GATC	4 cut(s)	402, 409, 469, 598
EaeI	YGGCCR	1 cut(s)	46
Eam1104I	CTCTTC	2 cut(s)	216, 763
EarI	CTCTTC	2 cut(s)	216, 763
EciI	GGCGGA	2 cut(s)	16, 63
Eco130I	CCWWGG	4 cut(s)	101, 494, 511, 556
Eco31I	GGTCTC	2 cut(s)	352, 695
EcoT14I	CCWWGG	4 cut(s)	101, 494, 511, 556
EcoT22I	ATGCAT	1 cut(s)	463
ErhI	CCWWGG	4 cut(s)	101, 494, 511, 556
Esp3I	CGTCTC	1 cut(s)	479
FaiI	YATR	2 cut(s)	459, 552
FaqI	GGGAC	1 cut(s)	501
Fnu4HI	GCNGC	2 cut(s)	129, 324
FokI	GGATG	4 cut(s)	191, 227, 635, 700
Fsp4HI	GCNGC	2 cut(s)	129, 324
FspBI	CTAG	2 cut(s)	102, 495
FspI	TGCGCA	1 cut(s)	725
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	2 cut(s)	129, 324
HaeIII	GGCC	4 cut(s)	5, 48, 128, 708
HapII	CCGG	4 cut(s)	56, 119, 175, 705
HhaI	GCGC	1 cut(s)	726
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HinfI	GANTC	3 cut(s)	201, 561, 589
HpaII	CCGG	4 cut(s)	56, 119, 175, 705
HphI	GGTGA	4 cut(s)	60, 133, 286, 737
Hpy166II	GTNNAC	2 cut(s)	277, 520
Hpy188I	TCNGA	6 cut(s)	157, 255, 443, 635, 666, 698
Hpy188III	TCNNGA	2 cut(s)	367, 400
Hpy8I	GTNNAC	2 cut(s)	277, 520
Hpy99I	CGWCG	2 cut(s)	37, 40
HpyAV	CCTTC	5 cut(s)	21, 118, 406, 754, 771
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	461, 630, 713
HpyF3I	CTNAG	4 cut(s)	210, 309, 440, 663
HpySE526I	ACGT	1 cut(s)	32
HspAI	GCGC	1 cut(s)	724
KroI	GCCGGC	1 cut(s)	174
KroNI	GCCGGC	1 cut(s)	176
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	402, 409, 469, 598
LmnI	GCTCC	1 cut(s)	29
LweI	GCATC	5 cut(s)	283, 639, 657, 678, 722
MaeI	CTAG	2 cut(s)	102, 495
MaeII	ACGT	1 cut(s)	32
MaeIII	GTNAC	1 cut(s)	433
MalI	GATC	4 cut(s)	404, 411, 471, 600
MboI	GATC	4 cut(s)	402, 409, 469, 598
MboII	GAAGA	5 cut(s)	233, 268, 277, 742, 780
MluCI	AATT	3 cut(s)	50, 285, 547
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	6 cut(s)	81, 127, 151, 241, 437, 764
Mph1103I	ATGCAT	1 cut(s)	463
MroNI	GCCGGC	1 cut(s)	174
MseI	TTAA	1 cut(s)	480
MspA1I	CMGCKG	2 cut(s)	131, 719
MspI	CCGG	4 cut(s)	56, 119, 175, 705
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	2 cut(s)	310, 461
MvnI	CGCG	1 cut(s)	131
NaeI	GCCGGC	1 cut(s)	176
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	4 cut(s)	402, 409, 469, 598
NgoMIV	GCCGGC	1 cut(s)	174
NlaIV	GGNNCC	2 cut(s)	117, 252
NmuCI	GTSAC	1 cut(s)	433
NsbI	TGCGCA	1 cut(s)	725
NsiI	ATGCAT	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	758
PctI	GAATGC	2 cut(s)	310, 461
PdiI	GCCGGC	1 cut(s)	176
PfeI	GAWTC	3 cut(s)	201, 561, 589
Pfl23II	CGTACG	1 cut(s)	90
PkrI	GCNGC	2 cut(s)	130, 325
PshBI	ATTAAT	1 cut(s)	480
PspLI	CGTACG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	117, 252
PspPI	GGNCC	1 cut(s)	707
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	1 cut(s)	480
SatI	GCNGC	2 cut(s)	129, 324
Sau3AI	GATC	4 cut(s)	402, 409, 469, 598
Sau96I	GGNCC	1 cut(s)	707
ScrFI	CCNGG	1 cut(s)	56
SfaNI	GCATC	5 cut(s)	283, 639, 657, 678, 722
Sfr303I	CCGCGG	1 cut(s)	132
SfuI	TTCGAA	1 cut(s)	758
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	50, 285, 547
SsiI	CCGC	7 cut(s)	27, 74, 129, 131, 282, 323, 719
SspMI	CTAG	2 cut(s)	102, 495
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	4 cut(s)	101, 494, 511, 556
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	758
TasI	AATT	3 cut(s)	50, 285, 547
TauI	GCSGC	2 cut(s)	131, 326
TfiI	GAWTC	3 cut(s)	201, 561, 589
Tru1I	TTAA	1 cut(s)	480
Tru9I	TTAA	1 cut(s)	480
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	344
TspGWI	ACGGA	1 cut(s)	108
VspI	ATTAAT	1 cut(s)	480
XmaJI	CCTAGG	2 cut(s)	101, 494
XspI	CTAG	2 cut(s)	102, 495
Zsp2I	ATGCAT	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.