AT4G01470

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0015828
Physical Location & Seq
Reverse (-)
624786 .. 625885
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G01470.1

Sequence Viewer

Length: 759 bp
ATGCCTATCAACAGAATTGCGATTGGAACGCCGGGGGAAGCTAGTCGTCCCGATGCGATTAGAGCAGCTTTCGCGGAGTTTTTCTCGATGGTTATATTCGTTTTCGCGGGTCAAGGCTCTGGAATGGCTTATGGAAAACTAACTGGAGATGGTCCAGCCACACCTGCCGGTCTTGTGGCCGCGTCTTTGTCTCATGCGTTTGCGTTGTTCGTTGCGGTTTCCGTTGGAGCTAACGTTTCAGGTGGTCATGTGAACCCGGCGGTTACATTTGGGGCTTTTATTGGTGGAAACATAACGTTGTTGAGAGCTATTCTTTATTGGATCGCTCAATTACTCGGAGCAGTCGTAGCTTGCTTGTTGCTCAAGGTAAGCACTGGCGGGATGGAAACGGCTGCGTTTTCGCTATCATATGGAGTGACGCCCTGGAACGCAGTCGTTTTCGAGATTGTGATGACGTTTGGGTTAGTTTACACGGTTTACGCTACTGCCGTGGATCCCAAGAAAGGTGATATTGGAATCATTGCGCCTTTGGCGATTGGGTTAATCGTTGGAGCTAACATTCTGGTTGGTGGTGCTTTCGACGGTGCATCGATGAACCCCGCGGTTTCATTTGGTCCGGCCGTGGTTAGCTGGATTTGGACGAATCATTGGGTCTATTGGGTTGGTCCTTTTATCGGTGCAGCCATTGCAGCTATTGTTTATGATACTATCTTTATCGGTAGTAATGGACATGAACCACTTCCTTCTAATGATTTCTAA

Protein Analysis

252

Amino Acids

25.91

Weight (kDa)

5.39

Isoelectric Point (pI)

19.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 14 - 234 4.6e-75 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015828)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G01470
fragaria_vesca FvH4_7g21520
malus_domestica MD01G1121900.v1.1
prunus_persica Prupe.2G229500_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365831
rosa_laevigata RLG00000027388
rosa_multiflora Rmu_sc0004311.1_g000001 Rmu_sc0023137.1_g000003
rosa_roxburghii Rroxscaffold_4G00290830
rosa_rugosa Rorug01G0324900
rosa_samantha Rh1AG333800 Rh1BG294400 Rh1CG311100 Rh1DG326800
rosa_wichuraiana Rw1G029610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 172
Acc36I ACCTGC 1 cut(s) 172
AccII CGCG 4 cut(s) 74, 107, 182, 602
AciI CCGC 8 cut(s) 74, 107, 180, 215, 260, 378, 600, 602
AclI AACGTT 2 cut(s) 234, 296
AclWI GGATC 3 cut(s) 329, 488, 501
AcoI YGGCCR 2 cut(s) 177, 618
AcyI GRCGYC 1 cut(s) 419
AfiI CCNNNNNNNGG 2 cut(s) 503, 674
AjnI CCWGG 1 cut(s) 422
AluBI AGCT 8 cut(s) 41, 68, 230, 308, 350, 554, 630, 692
AluI AGCT 8 cut(s) 41, 68, 230, 308, 350, 554, 630, 692
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 3 cut(s) 329, 488, 501
AoxI GGCC 2 cut(s) 177, 618
ApeKI GCWGC 4 cut(s) 65, 392, 680, 689
Asp700I GAANNNNTTC 1 cut(s) 738
AspLEI GCGC 1 cut(s) 526
AspS9I GGNCC 3 cut(s) 152, 614, 665
AsuC2I CCSGG 2 cut(s) 33, 257
AsuHPI GGTGA 1 cut(s) 518
AvaII GGWCC 3 cut(s) 152, 614, 665
BamHI GGATCC 1 cut(s) 493
BbvI GCAGC 4 cut(s) 77, 379, 692, 701
BccI CCATC 3 cut(s) 82, 143, 376
BceAI ACGGC 3 cut(s) 405, 473, 605
BciT130I CCWGG 1 cut(s) 424
BcnI CCSGG 2 cut(s) 33, 257
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 42
BfuAI ACCTGC 1 cut(s) 172
BisI GCNGC 5 cut(s) 66, 180, 393, 681, 690
BlsI GCNGC 5 cut(s) 67, 181, 394, 682, 691
Bme1390I CCNGG 3 cut(s) 33, 257, 424
Bme18I GGWCC 3 cut(s) 152, 614, 665
BmgT120I GGNCC 3 cut(s) 152, 614, 665
BmiI GGNNCC 1 cut(s) 495
BmrFI CCNGG 3 cut(s) 33, 257, 424
BmsI GCATC 2 cut(s) 43, 596
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 2 cut(s) 33, 257
Bsa29I ATCGAT 1 cut(s) 590
BsaHI GRCGYC 1 cut(s) 419
BsaJI CCNNGG 5 cut(s) 32, 422, 489, 600, 621
BsaXI ACNNNNNCTCC 4 cut(s) 219, 249, 330, 360
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 674
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 148, 379
Bse3DI GCAATG 2 cut(s) 519, 684
BseBI CCWGG 1 cut(s) 424
BseCI ATCGAT 1 cut(s) 590
BseDI CCNNGG 5 cut(s) 32, 422, 489, 600, 621
BseGI GGATG 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 503, 674
BseMI GCAATG 2 cut(s) 519, 684
BseNI ACTGG 2 cut(s) 148, 379
BseX3I CGGCCG 1 cut(s) 618
BseXI GCAGC 4 cut(s) 77, 379, 692, 701
BsgI GTGCAG 1 cut(s) 699
Bsh1236I CGCG 4 cut(s) 74, 107, 182, 602
Bsh1285I CGRYCG 1 cut(s) 621
BshFI GGCC 2 cut(s) 179, 620
BshVI ATCGAT 1 cut(s) 590
BsiEI CGRYCG 1 cut(s) 621
BsiSI CCGG 4 cut(s) 32, 168, 257, 617
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 503, 674
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 2 cut(s) 179, 620
Bsp143I GATC 2 cut(s) 321, 493
BspACI CCGC 8 cut(s) 74, 107, 180, 215, 260, 378, 600, 602
BspANI GGCC 2 cut(s) 179, 620
BspDI ATCGAT 1 cut(s) 590
BspFNI CGCG 4 cut(s) 74, 107, 182, 602
BspLI GGNNCC 1 cut(s) 495
BspMI ACCTGC 1 cut(s) 172
BspPI GGATC 3 cut(s) 329, 488, 501
BsrDI GCAATG 2 cut(s) 519, 684
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 148, 379
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 5 cut(s) 32, 422, 489, 600, 621
BssMI GATC 2 cut(s) 321, 493
BssNI GRCGYC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 424
Bst4CI ACNGT 2 cut(s) 475, 584
BstACI GRCGYC 1 cut(s) 419
BstAPI GCANNNNNTGC 1 cut(s) 686
BstC8I GCNNGC 1 cut(s) 352
BstDSI CCRYGG 3 cut(s) 489, 600, 621
BstF5I GGATG 1 cut(s) 387
BstFNI CGCG 4 cut(s) 74, 107, 182, 602
BstHHI GCGC 1 cut(s) 526
BstKTI GATC 2 cut(s) 324, 496
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 2 cut(s) 321, 493
BstMCI CGRYCG 1 cut(s) 621
BstMWI GCNNNNNNNGC 7 cut(s) 62, 71, 164, 347, 530, 686, 689
BstNI CCWGG 1 cut(s) 424
BstSCI CCNGG 3 cut(s) 31, 255, 422
BstUI CGCG 4 cut(s) 74, 107, 182, 602
BstV1I GCAGC 4 cut(s) 77, 379, 692, 701
BstX2I RGATCY 1 cut(s) 493
BstYI RGATCY 1 cut(s) 493
BstZI CGGCCG 1 cut(s) 618
Bsu15I ATCGAT 1 cut(s) 590
BsuRI GGCC 2 cut(s) 179, 620
BsuTUI ATCGAT 1 cut(s) 590
BtgI CCRYGG 3 cut(s) 489, 600, 621
BtsCI GGATG 1 cut(s) 387
BtsIMutI CAGTG 1 cut(s) 372
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 1 cut(s) 526
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 3 cut(s) 152, 614, 665
Cfr42I CCGCGG 1 cut(s) 603
ClaI ATCGAT 1 cut(s) 590
CseI GACGC 2 cut(s) 171, 427
CviAII CATG 3 cut(s) 194, 248, 731
DpnI GATC 2 cut(s) 323, 495
DpnII GATC 2 cut(s) 321, 493
EaeI YGGCCR 2 cut(s) 177, 618
EagI CGGCCG 1 cut(s) 618
EclXI CGGCCG 1 cut(s) 618
Eco47I GGWCC 3 cut(s) 152, 614, 665
Eco52I CGGCCG 1 cut(s) 618
EcoRII CCWGG 1 cut(s) 422
FaeI CATG 3 cut(s) 197, 251, 734
FaiI YATR 9 cut(s) 95, 132, 195, 249, 293, 409, 411, 702, 732
FaqI GGGAC 1 cut(s) 33
FatI CATG 3 cut(s) 193, 247, 730
FauI CCCGC 3 cut(s) 100, 371, 607
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 66, 180, 393, 681, 690
FokI GGATG 1 cut(s) 394
Fsp4HI GCNGC 5 cut(s) 66, 180, 393, 681, 690
FspBI CTAG 1 cut(s) 42
GlaI GCGC 1 cut(s) 525
GluI GCNGC 5 cut(s) 66, 180, 393, 681, 690
GsuI CTGGAG 1 cut(s) 165
HaeIII GGCC 2 cut(s) 179, 620
HapII CCGG 4 cut(s) 32, 168, 257, 617
HgaI GACGC 2 cut(s) 171, 427
HhaI GCGC 1 cut(s) 526
Hin1I GRCGYC 1 cut(s) 419
Hin1II CATG 3 cut(s) 197, 251, 734
Hin6I GCGC 1 cut(s) 524
HinP1I GCGC 1 cut(s) 524
HinfI GANTC 2 cut(s) 516, 643
HpaII CCGG 4 cut(s) 32, 168, 257, 617
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 3 cut(s) 253, 469, 478
Hpy188I TCNGA 1 cut(s) 338
Hpy188III TCNNGA 4 cut(s) 50, 85, 120, 442
Hpy8I GTNNAC 3 cut(s) 253, 469, 478
Hpy99I CGWCG 1 cut(s) 584
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 2 cut(s) 475, 584
HpyCH4IV ACGT 3 cut(s) 234, 296, 455
HpyCH4V TGCA 3 cut(s) 587, 680, 689
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 71, 164, 347, 530, 686, 689
HpySE526I ACGT 3 cut(s) 234, 296, 455
Hsp92I GRCGYC 1 cut(s) 419
Hsp92II CATG 3 cut(s) 197, 251, 734
HspAI GCGC 1 cut(s) 524
KspI CCGCGG 1 cut(s) 603
Kzo9I GATC 2 cut(s) 321, 493
LmnI GCTCC 3 cut(s) 227, 338, 551
Lsp1109I GCAGC 4 cut(s) 77, 379, 692, 701
LweI GCATC 2 cut(s) 43, 596
MaeI CTAG 1 cut(s) 42
MaeII ACGT 3 cut(s) 234, 296, 455
MaeIII GTNAC 2 cut(s) 262, 415
MalI GATC 2 cut(s) 323, 495
MboI GATC 2 cut(s) 321, 493
MflI RGATCY 1 cut(s) 493
MluCI AATT 2 cut(s) 15, 329
MmeI TCCRAC 2 cut(s) 205, 529
MroXI GAANNNNTTC 1 cut(s) 738
MseI TTAA 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 4 cut(s) 32, 168, 257, 617
MspR9I CCNGG 3 cut(s) 33, 257, 424
MvaI CCWGG 1 cut(s) 424
MvnI CGCG 4 cut(s) 74, 107, 182, 602
MwoI GCNNNNNNNGC 7 cut(s) 62, 71, 164, 347, 530, 686, 689
NciI CCSGG 2 cut(s) 33, 257
NdeI CATATG 1 cut(s) 409
NdeII GATC 2 cut(s) 321, 493
NlaIII CATG 3 cut(s) 197, 251, 734
NlaIV GGNNCC 1 cut(s) 495
NmuCI GTSAC 1 cut(s) 415
PaqCI CACCTGC 1 cut(s) 172
PcsI WCGNNNNNNNCGW 2 cut(s) 342, 486
PdmI GAANNNNTTC 1 cut(s) 738
PfeI GAWTC 2 cut(s) 516, 643
PkrI GCNGC 5 cut(s) 67, 181, 394, 682, 691
Psp1406I AACGTT 2 cut(s) 234, 296
Psp6I CCWGG 1 cut(s) 422
PspGI CCWGG 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 495
PspPI GGNCC 3 cut(s) 152, 614, 665
PsuI RGATCY 1 cut(s) 493
SacII CCGCGG 1 cut(s) 603
SaqAI TTAA 1 cut(s) 542
SatI GCNGC 5 cut(s) 66, 180, 393, 681, 690
Sau3AI GATC 2 cut(s) 321, 493
Sau96I GGNCC 3 cut(s) 152, 614, 665
ScrFI CCNGG 3 cut(s) 33, 257, 424
SfaNI GCATC 2 cut(s) 43, 596
Sfr303I CCGCGG 1 cut(s) 603
SgrBI CCGCGG 1 cut(s) 603
SinI GGWCC 3 cut(s) 152, 614, 665
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 2 cut(s) 15, 329
SsiI CCGC 8 cut(s) 74, 107, 180, 215, 260, 378, 600, 602
SspMI CTAG 1 cut(s) 42
StyD4I CCNGG 3 cut(s) 31, 255, 422
TaaI ACNGT 2 cut(s) 475, 584
TaiI ACGT 3 cut(s) 237, 299, 458
TaqI TCGA 4 cut(s) 86, 441, 579, 590
TasI AATT 2 cut(s) 15, 329
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 516, 643
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 1 cut(s) 379
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 4 cut(s) 65, 392, 680, 689
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 3 cut(s) 597, 608, 747
TspGWI ACGGA 1 cut(s) 211
TspRI CASTG 1 cut(s) 379
VpaK11BI GGWCC 3 cut(s) 152, 614, 665
XmnI GAANNNNTTC 1 cut(s) 738
XspI CTAG 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.