Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0015828

Physical Location & Seq

Genomic Coordinates Reverse (-)

11307598 .. 11308282

Gene Structure 685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00290830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCGATCTCTAGAATTGCAGTTGGGACACCAGGAGAGGCAAGCCACCCTGATGCAATAAGGGCTGCCTTTGCTGAGTTTTTCTCTATGCTTATTTTTGTTTTTGCCGGGGAAGGTTCTGGCATGGCTTTCAGTAAGCTTACTAACAATGGATCAGCCACACCGTCTGGTCTGGTAGCTGCATCGTTGTCACATGCGTTTGCGCTATTCGTGGCGGTCTCAGTTGGTGCAAACATTTCTGGAGGCCATGTAAACCCTGCTGTGACATTTGGTGCATTCCTTGGTGGGAACATAACACTGTTGAGGGCCATTCTGTATTGGATGGCGCAGCTTCTGGGATCGGTTGTTGCTTGCTTGTTGCTCAAGTTTGCCACTGGCGGATTGGTAAGGAACATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

132

Amino Acids

13.45

Weight (kDa)

9.18

Isoelectric Point (pI)

26.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 129	8.6e-35	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01470
fragaria_vesca	FvH4_7g21520
malus_domestica	MD01G1121900.v1.1
prunus_persica	Prupe.2G229500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365831
rosa_laevigata	RLG00000027388
rosa_multiflora	Rmu_sc0004311.1_g000001 Rmu_sc0023137.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290830
rosa_rugosa	Rorug01G0324900
rosa_samantha	Rh1AG333800 Rh1BG294400 Rh1CG311100 Rh1DG326800
rosa_wichuraiana	Rw1G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	215, 378
AclWI	GGATC	2 cut(s)	160, 346
AflIII	ACRYGT	1 cut(s)	393
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	139, 179, 331
AluI	AGCT	3 cut(s)	139, 179, 331
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	160, 346
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	2 cut(s)	244, 306
ApeKI	GCWGC	3 cut(s)	65, 179, 328
AspLEI	GCGC	2 cut(s)	205, 328
AspS9I	GGNCC	1 cut(s)	306
AsuC2I	CCSGG	1 cut(s)	109
BbvI	GCAGC	3 cut(s)	52, 166, 340
BccI	CCATC	1 cut(s)	316
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	3 cut(s)	66, 180, 329
BlsI	GCNGC	3 cut(s)	67, 181, 330
Bme1390I	CCNGG	2 cut(s)	33, 109
BmgT120I	GGNCC	1 cut(s)	306
BmrFI	CCNGG	2 cut(s)	33, 109
BmsI	GCATC	2 cut(s)	43, 191
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	108, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bse1I	ACTGG	1 cut(s)	379
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	108, 280
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	2 cut(s)	66, 234
BseNI	ACTGG	1 cut(s)	379
BseXI	GCAGC	3 cut(s)	52, 166, 340
BshFI	GGCC	2 cut(s)	246, 308
BsiSI	CCGG	1 cut(s)	108
BslFI	GGGAC	1 cut(s)	40
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	246, 308
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	3 cut(s)	6, 152, 338
BspACI	CCGC	2 cut(s)	215, 378
BspANI	GGCC	2 cut(s)	246, 308
BspCNI	CTCAG	2 cut(s)	67, 233
BspPI	GGATC	2 cut(s)	160, 346
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	108, 280
BssMI	GATC	3 cut(s)	6, 152, 338
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	2 cut(s)	165, 300
BstC8I	GCNNGC	2 cut(s)	43, 352
BstDEI	CTNAG	2 cut(s)	75, 220
BstF5I	GGATG	1 cut(s)	327
BstHHI	GCGC	2 cut(s)	205, 328
BstKTI	GATC	3 cut(s)	9, 155, 341
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	6, 152, 338
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 71
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	197, 397
BstSCI	CCNGG	2 cut(s)	31, 107
BstV1I	GCAGC	3 cut(s)	52, 166, 340
BsuRI	GGCC	2 cut(s)	246, 308
BtsCI	GGATG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	296, 372
Cac8I	GCNNGC	2 cut(s)	43, 352
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	2 cut(s)	205, 328
Cfr13I	GGNCC	1 cut(s)	306
CviAII	CATG	4 cut(s)	124, 194, 248, 394
CviJI	RGCY	9 cut(s)	45, 65, 128, 139, 158, 179, 246, 308, 331
CviKI_1	RGCY	9 cut(s)	45, 65, 128, 139, 158, 179, 246, 308, 331
DdeI	CTNAG	2 cut(s)	75, 220
DpnI	GATC	3 cut(s)	8, 154, 340
DpnII	GATC	3 cut(s)	6, 152, 338
EciI	GGCGGA	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	280
Eco31I	GGTCTC	1 cut(s)	223
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	127, 197, 251, 397
FaiI	YATR	6 cut(s)	89, 125, 195, 249, 293, 395
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	4 cut(s)	123, 193, 247, 393
Fnu4HI	GCNGC	3 cut(s)	66, 180, 329
FokI	GGATG	1 cut(s)	334
Fsp4HI	GCNGC	3 cut(s)	66, 180, 329
FspBI	CTAG	1 cut(s)	12
GlaI	GCGC	2 cut(s)	204, 327
GluI	GCNGC	3 cut(s)	66, 180, 329
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	246, 308
HapII	CCGG	1 cut(s)	108
HhaI	GCGC	2 cut(s)	205, 328
Hin1II	CATG	4 cut(s)	127, 197, 251, 397
Hin6I	GCGC	2 cut(s)	203, 326
HinP1I	GCGC	2 cut(s)	203, 326
HindIII	AAGCTT	1 cut(s)	137
HpaII	CCGG	1 cut(s)	108
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188III	TCNNGA	2 cut(s)	12, 240
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	1 cut(s)	107
HpyCH4III	ACNGT	2 cut(s)	165, 300
HpyCH4V	TGCA	5 cut(s)	20, 56, 182, 230, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 71
HpyF3I	CTNAG	2 cut(s)	75, 220
Hsp92II	CATG	4 cut(s)	127, 197, 251, 397
HspAI	GCGC	2 cut(s)	203, 326
Kzo9I	GATC	3 cut(s)	6, 152, 338
Lsp1109I	GCAGC	3 cut(s)	52, 166, 340
LweI	GCATC	2 cut(s)	43, 191
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	189, 262
MalI	GATC	3 cut(s)	8, 154, 340
MboI	GATC	3 cut(s)	6, 152, 338
MluCI	AATT	1 cut(s)	15
MnlI	CCTC	3 cut(s)	31, 236, 297
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	1 cut(s)	108
MspR9I	CCNGG	2 cut(s)	33, 109
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	2 cut(s)	62, 71
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	3 cut(s)	6, 152, 338
NlaIII	CATG	4 cut(s)	127, 197, 251, 397
NmuCI	GTSAC	2 cut(s)	189, 262
NspI	RCATGY	2 cut(s)	197, 397
PciI	ACATGT	1 cut(s)	393
PctI	GAATGC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	67, 181, 330
PscI	ACATGT	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	306
PstNI	CAGNNNCTG	1 cut(s)	334
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	3 cut(s)	66, 180, 329
Sau3AI	GATC	3 cut(s)	6, 152, 338
Sau96I	GGNCC	1 cut(s)	306
ScrFI	CCNGG	2 cut(s)	33, 109
SetI	ASST	4 cut(s)	118, 141, 181, 333
SfaNI	GCATC	2 cut(s)	43, 191
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	2 cut(s)	215, 378
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	2 cut(s)	31, 107
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	2 cut(s)	165, 300
TasI	AATT	1 cut(s)	15
TscAI	CASTG	2 cut(s)	303, 379
TseFI	GTSAC	2 cut(s)	189, 262
TseI	GCWGC	3 cut(s)	65, 179, 328
Tsp45I	GTSAC	2 cut(s)	189, 262
TspRI	CASTG	2 cut(s)	303, 379
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	197, 397
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.