Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004311.1

Orthogroup ID

OG0015828

Physical Location & Seq

Genomic Coordinates Reverse (-)

3759 .. 4944

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004311.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

atggcgatctctagaattgcagttgggacaccaggagaggcaagccaccctgatgcaataagggctgcctttgctgagtttttctctatgcttatttttgtttttgccggggaaggttctggcatggctttcagtaagcttactaacaatggatcagccacaccgtctggtctggtagctgcatcattgtcacatgcgtttgcgctattcgtggcggtctcagttggtgcaaacatttctggaggccatgtaaaccctgctgtgacatttggtgcattccttggtgggaacataacactgttgagggccattctgtattggattgcgcagcttctgggatcggttgttgcttgcttgttgctcaagtttgccactggcggattggaaacagcagcattttctctatcctctggtgtttctatatggaatgctttggtgtttgagattgtgatgaccttcggcttggtctacacagtttatgccacagcagttgatccgaagaaagggaatgtaggcattgtagcacctatcgcaattggtttgatagtgggagccaacatcttggctggtggtgcttttgatggtgcatctatgaacccagccgtgtcattcgggcctgctgtggtcagttggtcatggaatcaccactgggtctactgggccggcccgtttattggtgccgcaattgctgctcttgtctatgacaacatgttcatcggtgatggagctcatgaaccgcttccccacaatgacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

252

Amino Acids

25.89

Weight (kDa)

5.7

Isoelectric Point (pI)

21.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01470
fragaria_vesca	FvH4_7g21520
malus_domestica	MD01G1121900.v1.1
prunus_persica	Prupe.2G229500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365831
rosa_laevigata	RLG00000027388
rosa_multiflora	Rmu_sc0004311.1_g000001 Rmu_sc0023137.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290830
rosa_rugosa	Rorug01G0324900
rosa_samantha	Rh1AG333800 Rh1BG294400 Rh1CG311100 Rh1DG326800
rosa_wichuraiana	Rw1G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AccB1I	GGYRCC	1 cut(s)	677
AccI	GTMKAC	2 cut(s)	468, 654
AciI	CCGC	4 cut(s)	215, 378, 681, 737
AclWI	GGATC	3 cut(s)	160, 346, 488
AfiI	CCNNNNNNNGG	2 cut(s)	503, 674
AflIII	ACRYGT	1 cut(s)	708
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	139, 179, 331, 728
AluI	AGCT	4 cut(s)	139, 179, 331, 728
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	160, 346, 488
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	5 cut(s)	244, 306, 614, 660, 664
ApeKI	GCWGC	5 cut(s)	65, 179, 328, 392, 689
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	205, 328
AspS9I	GGNCC	4 cut(s)	306, 614, 660, 665
AsuC2I	CCSGG	1 cut(s)	109
AsuHPI	GGTGA	2 cut(s)	635, 731
BanI	GGYRCC	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	5 cut(s)	52, 166, 340, 404, 676
BccI	CCATC	2 cut(s)	575, 716
BceAI	ACGGC	1 cut(s)	587
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	109
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	12
BisI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
BlsI	GCNGC	6 cut(s)	67, 181, 330, 394, 682, 691
Bme1390I	CCNGG	2 cut(s)	33, 109
BmgT120I	GGNCC	4 cut(s)	306, 614, 660, 665
BmiI	GGNNCC	2 cut(s)	553, 679
BmrFI	CCNGG	2 cut(s)	33, 109
BmrI	ACTGGG	2 cut(s)	658, 667
BmsI	GCATC	3 cut(s)	43, 191, 596
BmuI	ACTGGG	2 cut(s)	658, 667
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	109
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	108, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 674
Bse118I	RCCGGY	1 cut(s)	662
Bse1I	ACTGG	3 cut(s)	379, 653, 662
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	108, 280
BseLI	CCNNNNNNNGG	2 cut(s)	503, 674
BseMII	CTCAG	2 cut(s)	66, 234
BseNI	ACTGG	3 cut(s)	379, 653, 662
BseXI	GCAGC	5 cut(s)	52, 166, 340, 404, 676
BseYI	CCCAGC	1 cut(s)	598
BshFI	GGCC	5 cut(s)	246, 308, 616, 662, 666
BshNI	GGYRCC	1 cut(s)	677
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	2 cut(s)	108, 663
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	2 cut(s)	503, 674
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	2 cut(s)	275, 433
BsnI	GGCC	5 cut(s)	246, 308, 616, 662, 666
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	6, 152, 338, 493
BspACI	CCGC	4 cut(s)	215, 378, 681, 737
BspANI	GGCC	5 cut(s)	246, 308, 616, 662, 666
BspCNI	CTCAG	2 cut(s)	67, 233
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	2 cut(s)	553, 679
BspPI	GGATC	3 cut(s)	160, 346, 488
BspT107I	GGYRCC	1 cut(s)	677
BspTNI	GGTCTC	1 cut(s)	223
BsrFI	RCCGGY	1 cut(s)	662
BsrI	ACTGG	3 cut(s)	379, 653, 662
BssAI	RCCGGY	1 cut(s)	662
BssECI	CCNNGG	2 cut(s)	108, 280
BssMI	GATC	4 cut(s)	6, 152, 338, 493
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	165, 300, 475
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstC8I	GCNNGC	4 cut(s)	43, 352, 618, 664
BstDEI	CTNAG	2 cut(s)	75, 220
BstHHI	GCGC	2 cut(s)	205, 328
BstKTI	GATC	4 cut(s)	9, 155, 341, 496
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	4 cut(s)	6, 152, 338, 493
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 71, 530, 572, 686, 689
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	2 cut(s)	197, 712
BstSCI	CCNGG	2 cut(s)	31, 107
BstV1I	GCAGC	5 cut(s)	52, 166, 340, 404, 676
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	5 cut(s)	246, 308, 616, 662, 666
BtsIMutI	CAGTG	3 cut(s)	296, 372, 646
Cac8I	GCNNGC	4 cut(s)	43, 352, 618, 664
CaiI	CAGNNNCTG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	2 cut(s)	205, 328
Cfr10I	RCCGGY	1 cut(s)	662
Cfr13I	GGNCC	4 cut(s)	306, 614, 660, 665
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	6 cut(s)	124, 194, 248, 636, 709, 731
DdeI	CTNAG	2 cut(s)	75, 220
DpnI	GATC	4 cut(s)	8, 154, 340, 495
DpnII	GATC	4 cut(s)	6, 152, 338, 493
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	728
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	223
Eco53kI	GAGCTC	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	6 cut(s)	127, 197, 251, 639, 712, 734
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	6 cut(s)	123, 193, 247, 635, 708, 730
FblI	GTMKAC	2 cut(s)	468, 654
Fnu4HI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
FriOI	GRGCYC	1 cut(s)	730
FseI	GGCCGGCC	1 cut(s)	666
Fsp4HI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
FspBI	CTAG	1 cut(s)	12
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	2 cut(s)	204, 327
GluI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
GsaI	CCCAGC	1 cut(s)	602
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	5 cut(s)	246, 308, 616, 662, 666
HapII	CCGG	2 cut(s)	108, 663
HhaI	GCGC	2 cut(s)	205, 328
Hin1II	CATG	6 cut(s)	127, 197, 251, 639, 712, 734
Hin6I	GCGC	2 cut(s)	203, 326
HinP1I	GCGC	2 cut(s)	203, 326
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	640
HpaII	CCGG	2 cut(s)	108, 663
HphI	GGTGA	2 cut(s)	635, 731
Hpy166II	GTNNAC	3 cut(s)	253, 469, 655
Hpy188I	TCNGA	1 cut(s)	498
Hpy188III	TCNNGA	3 cut(s)	12, 240, 731
Hpy8I	GTNNAC	3 cut(s)	253, 469, 655
HpyAV	CCTTC	2 cut(s)	107, 466
HpyCH4III	ACNGT	3 cut(s)	165, 300, 475
HpyCH4V	TGCA	6 cut(s)	20, 56, 182, 230, 275, 587
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 71, 530, 572, 686, 689
HpyF3I	CTNAG	2 cut(s)	75, 220
Hsp92II	CATG	6 cut(s)	127, 197, 251, 639, 712, 734
HspAI	GCGC	2 cut(s)	203, 326
KroI	GCCGGC	1 cut(s)	662
KroNI	GCCGGC	1 cut(s)	664
Kzo9I	GATC	4 cut(s)	6, 152, 338, 493
LmnI	GCTCC	2 cut(s)	551, 725
Lsp1109I	GCAGC	5 cut(s)	52, 166, 340, 404, 676
LweI	GCATC	3 cut(s)	43, 191, 596
MaeI	CTAG	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	189, 262
MalI	GATC	4 cut(s)	8, 154, 340, 495
MboI	GATC	4 cut(s)	6, 152, 338, 493
MboII	GAAGA	1 cut(s)	511
MfeI	CAATTG	2 cut(s)	534, 684
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	3 cut(s)	15, 534, 684
MnlI	CCTC	4 cut(s)	31, 236, 297, 418
MroNI	GCCGGC	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	738
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	2 cut(s)	108, 663
MspR9I	CCNGG	2 cut(s)	33, 109
MunI	CAATTG	2 cut(s)	534, 684
Mva1269I	GAATGC	2 cut(s)	275, 433
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	6 cut(s)	62, 71, 530, 572, 686, 689
NaeI	GCCGGC	1 cut(s)	664
NciI	CCSGG	1 cut(s)	109
NdeII	GATC	4 cut(s)	6, 152, 338, 493
NgoMIV	GCCGGC	1 cut(s)	662
NlaIII	CATG	6 cut(s)	127, 197, 251, 639, 712, 734
NlaIV	GGNNCC	2 cut(s)	553, 679
NmuCI	GTSAC	2 cut(s)	189, 262
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	2 cut(s)	197, 712
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	708
PctI	GAATGC	2 cut(s)	275, 433
PdiI	GCCGGC	1 cut(s)	664
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	1 cut(s)	640
PkrI	GCNGC	6 cut(s)	67, 181, 330, 394, 682, 691
PscI	ACATGT	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	598
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	2 cut(s)	553, 679
PspPI	GGNCC	4 cut(s)	306, 614, 660, 665
PstNI	CAGNNNCTG	1 cut(s)	334
RigI	GGCCGGCC	1 cut(s)	666
RseI	CAYNNNNRTG	1 cut(s)	51
SacI	GAGCTC	1 cut(s)	730
SatI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
Sau3AI	GATC	4 cut(s)	6, 152, 338, 493
Sau96I	GGNCC	4 cut(s)	306, 614, 660, 665
ScrFI	CCNGG	2 cut(s)	33, 109
SduI	GDGCHC	1 cut(s)	730
SetI	ASST	7 cut(s)	118, 141, 181, 333, 458, 529, 730
SfaNI	GCATC	3 cut(s)	43, 191, 596
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	3 cut(s)	15, 534, 684
SsiI	CCGC	4 cut(s)	215, 378, 681, 737
SspMI	CTAG	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	730
StyD4I	CCNGG	2 cut(s)	31, 107
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	165, 300, 475
TasI	AATT	3 cut(s)	15, 534, 684
TauI	GCSGC	1 cut(s)	683
TfiI	GAWTC	1 cut(s)	640
TscAI	CASTG	3 cut(s)	303, 379, 653
TseFI	GTSAC	2 cut(s)	189, 262
TseI	GCWGC	5 cut(s)	65, 179, 328, 392, 689
Tsp45I	GTSAC	2 cut(s)	189, 262
TspDTI	ATGAA	3 cut(s)	608, 703, 747
TspRI	CASTG	3 cut(s)	303, 379, 653
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	2 cut(s)	197, 712
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	468, 654
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.