Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0015828

Physical Location & Seq

Genomic Coordinates Forward (+)

17205025 .. 17206400

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g21520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCCATCTCTAGAATTGCAATTGGGGCACCAGGAGAGGCAAGCCACCCTGATGCAATAAGGGCTGCCTTTGCTGAGTTTTTCTCTATGCTTATTTTTGTTTTTGCCGGGGAAGGTTCTGGCATGGCTTACAGTAAGCTTACTGACAATGGATCAGCCACACCGTCTGGTCTGATAGCTGCATCATTGTCGCACGCATTTGCGCTATTCGTGGCGGTCTCAGTTGGTGCAAACATTTCTGGAGGACATGTAAACCCTGCTGTCACATTTGGTGCATTCCTTGGTGGTAACATAACGCTGTTGAGGGCCAGTTTGTATTGGATTGCGCAGCTTCTGGGATCGGTTGTTGCTTGCTTGTTGCTCAAGTTTGCCACCGGCGGATTGGAAACAGCAGCATTTTCTCTATCCTCCGGCGTTTCTATATGGAATGCTTTGGTGTTTGAGATTGTGATGACCTTCGGCTTGGTCTACACTGTTTATGCCACAGCAGTGGATCCAAAGAAGGGGAATGTAGGCATTGTTGCACCCATTGCAATTGGTTTGATAGTTGGTGCCAACATCTTGGCTGGTGGTGCTTTTGATGGTGCATCCATGAACCCGGCCGTGTCATTCGGTCCTGCTGTGGTTAGTTGGTCATGGACTCACCACTGGGTCTACTGGGCTGGTCCGATGATCGGTGCAGCAATTGCTGCTCTTGTCTATGACAACCTGTTCATTGGTGATGGAGCTCATGAACCGCTTCCCCACAATGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

25.84

Weight (kDa)

5.49

Isoelectric Point (pI)

20.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	14 - 234	3e-76	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01470
fragaria_vesca	FvH4_7g21520
malus_domestica	MD01G1121900.v1.1
prunus_persica	Prupe.2G229500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365831
rosa_laevigata	RLG00000027388
rosa_multiflora	Rmu_sc0004311.1_g000001 Rmu_sc0023137.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290830
rosa_rugosa	Rorug01G0324900
rosa_samantha	Rh1AG333800 Rh1BG294400 Rh1CG311100 Rh1DG326800
rosa_wichuraiana	Rw1G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	327
AccB1I	GGYRCC	2 cut(s)	28, 551
AccI	GTMKAC	2 cut(s)	468, 654
AciI	CCGC	3 cut(s)	215, 378, 737
AclWI	GGATC	4 cut(s)	160, 346, 488, 501
AcoI	YGGCCR	2 cut(s)	3, 600
AfiI	CCNNNNNNNGG	2 cut(s)	503, 674
AflIII	ACRYGT	1 cut(s)	247
AjnI	CCWGG	1 cut(s)	31
AleI	CACNNNNGTG	1 cut(s)	488
AluBI	AGCT	4 cut(s)	139, 179, 331, 728
AluI	AGCT	4 cut(s)	139, 179, 331, 728
Alw21I	GWGCWC	1 cut(s)	730
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	4 cut(s)	160, 346, 488, 501
AlwNI	CAGNNNCTG	1 cut(s)	334
AoxI	GGCC	3 cut(s)	3, 306, 600
ApeKI	GCWGC	6 cut(s)	65, 179, 328, 392, 680, 689
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	2 cut(s)	205, 328
AspS9I	GGNCC	3 cut(s)	306, 614, 665
AsuC2I	CCSGG	2 cut(s)	109, 599
AsuHPI	GGTGA	2 cut(s)	635, 731
AvaII	GGWCC	2 cut(s)	614, 665
BaeGI	GKGCMC	1 cut(s)	31
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	493
BanI	GGYRCC	2 cut(s)	28, 551
BanII	GRGCYC	1 cut(s)	730
Bbv12I	GWGCWC	1 cut(s)	730
BbvI	GCAGC	6 cut(s)	52, 166, 340, 404, 676, 692
BccI	CCATC	3 cut(s)	14, 575, 716
BceAI	ACGGC	1 cut(s)	587
BcgI	CGANNNNNNTGC	2 cut(s)	171, 205
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	2 cut(s)	109, 599
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	2 cut(s)	12, 757
BisI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
BlsI	GCNGC	6 cut(s)	67, 181, 330, 394, 682, 691
Bme1390I	CCNGG	3 cut(s)	33, 109, 599
Bme18I	GGWCC	2 cut(s)	614, 665
BmgT120I	GGNCC	3 cut(s)	306, 614, 665
BmiI	GGNNCC	3 cut(s)	30, 495, 553
BmrFI	CCNGG	3 cut(s)	33, 109, 599
BmrI	ACTGGG	2 cut(s)	658, 667
BmsI	GCATC	3 cut(s)	43, 191, 596
BmuI	ACTGGG	2 cut(s)	658, 667
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpmI	CTGGAG	1 cut(s)	261
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	109, 599
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	108, 280
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
Bsc4I	CCNNNNNNNGG	2 cut(s)	503, 674
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	3 cut(s)	309, 653, 662
Bse3DI	GCAATG	1 cut(s)	528
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	108, 280
BseGI	GGATG	1 cut(s)	587
BseLI	CCNNNNNNNGG	2 cut(s)	503, 674
BseMI	GCAATG	1 cut(s)	528
BseMII	CTCAG	2 cut(s)	66, 234
BseNI	ACTGG	3 cut(s)	309, 653, 662
BseSI	GKGCMC	1 cut(s)	31
BseX3I	CGGCCG	1 cut(s)	600
BseXI	GCAGC	6 cut(s)	52, 166, 340, 404, 676, 692
BsgI	GTGCAG	1 cut(s)	699
Bsh1285I	CGRYCG	1 cut(s)	603
BshFI	GGCC	3 cut(s)	5, 308, 602
BshNI	GGYRCC	2 cut(s)	28, 551
BsiEI	CGRYCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	730
BsiSI	CCGG	4 cut(s)	108, 375, 411, 599
BslI	CCNNNNNNNGG	2 cut(s)	503, 674
BsmAI	GTCTC	1 cut(s)	223
BsmI	GAATGC	2 cut(s)	275, 433
BsnI	GGCC	3 cut(s)	5, 308, 602
Bso31I	GGTCTC	1 cut(s)	223
Bsp1286I	GDGCHC	2 cut(s)	31, 730
Bsp143I	GATC	4 cut(s)	152, 338, 493, 672
BspACI	CCGC	3 cut(s)	215, 378, 737
BspANI	GGCC	3 cut(s)	5, 308, 602
BspCNI	CTCAG	2 cut(s)	67, 233
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	3 cut(s)	30, 495, 553
BspPI	GGATC	4 cut(s)	160, 346, 488, 501
BspT107I	GGYRCC	2 cut(s)	28, 551
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	528
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	3 cut(s)	309, 653, 662
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	108, 280
BssMI	GATC	4 cut(s)	152, 338, 493, 672
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	134, 165, 475
BstAPI	GCANNNNNTGC	3 cut(s)	530, 686, 689
BstC8I	GCNNGC	3 cut(s)	43, 195, 352
BstDEI	CTNAG	2 cut(s)	75, 220
BstF5I	GGATG	1 cut(s)	587
BstHHI	GCGC	2 cut(s)	205, 328
BstKTI	GATC	4 cut(s)	155, 341, 496, 675
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	4 cut(s)	152, 338, 493, 672
BstMCI	CGRYCG	1 cut(s)	603
BstMWI	GCNNNNNNNGC	7 cut(s)	26, 62, 71, 530, 572, 686, 689
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	251
BstSCI	CCNGG	3 cut(s)	31, 107, 597
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	6 cut(s)	52, 166, 340, 404, 676, 692
BstX2I	RGATCY	1 cut(s)	493
BstXI	CCANNNNNNTGG	2 cut(s)	490, 562
BstYI	RGATCY	1 cut(s)	493
BstZI	CGGCCG	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	5, 308, 602
BtsCI	GGATG	1 cut(s)	587
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	3 cut(s)	471, 495, 646
Cac8I	GCNNGC	3 cut(s)	43, 195, 352
CaiI	CAGNNNCTG	1 cut(s)	334
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	2 cut(s)	205, 328
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	3 cut(s)	306, 614, 665
CviAII	CATG	5 cut(s)	124, 248, 592, 636, 731
DdeI	CTNAG	2 cut(s)	75, 220
DpnI	GATC	4 cut(s)	154, 340, 495, 674
DpnII	GATC	4 cut(s)	152, 338, 493, 672
EaeI	YGGCCR	2 cut(s)	3, 600
EagI	CGGCCG	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	728
EclXI	CGGCCG	1 cut(s)	600
Eco130I	CCWWGG	1 cut(s)	280
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	614, 665
Eco52I	CGGCCG	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	728
EcoICRI	GAGCTC	1 cut(s)	728
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	5 cut(s)	127, 251, 595, 639, 734
FatI	CATG	5 cut(s)	123, 247, 591, 635, 730
FblI	GTMKAC	2 cut(s)	468, 654
Fnu4HI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
FokI	GGATG	1 cut(s)	574
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
FspBI	CTAG	2 cut(s)	12, 757
FspI	TGCGCA	1 cut(s)	327
GlaI	GCGC	2 cut(s)	204, 327
GluI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	5, 308, 602
HapII	CCGG	4 cut(s)	108, 375, 411, 599
HhaI	GCGC	2 cut(s)	205, 328
Hin1II	CATG	5 cut(s)	127, 251, 595, 639, 734
Hin6I	GCGC	2 cut(s)	203, 326
HinP1I	GCGC	2 cut(s)	203, 326
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	1 cut(s)	640
HpaII	CCGG	4 cut(s)	108, 375, 411, 599
HphI	GGTGA	2 cut(s)	635, 731
Hpy166II	GTNNAC	3 cut(s)	253, 469, 655
Hpy188I	TCNGA	2 cut(s)	174, 669
Hpy188III	TCNNGA	3 cut(s)	12, 240, 731
Hpy8I	GTNNAC	3 cut(s)	253, 469, 655
HpyAV	CCTTC	3 cut(s)	107, 466, 496
HpyCH4III	ACNGT	3 cut(s)	134, 165, 475
HpyCH4V	TGCA	9 cut(s)	20, 56, 182, 230, 275, 524, 533, 587, 680
HpyF10VI	GCNNNNNNNGC	7 cut(s)	26, 62, 71, 530, 572, 686, 689
HpyF3I	CTNAG	2 cut(s)	75, 220
Hsp92II	CATG	5 cut(s)	127, 251, 595, 639, 734
HspAI	GCGC	2 cut(s)	203, 326
Kzo9I	GATC	4 cut(s)	152, 338, 493, 672
LmnI	GCTCC	1 cut(s)	725
Lsp1109I	GCAGC	6 cut(s)	52, 166, 340, 404, 676, 692
LweI	GCATC	3 cut(s)	43, 191, 596
MaeI	CTAG	2 cut(s)	12, 757
MaeIII	GTNAC	2 cut(s)	262, 287
MalI	GATC	4 cut(s)	154, 340, 495, 674
MboI	GATC	4 cut(s)	152, 338, 493, 672
MfeI	CAATTG	3 cut(s)	21, 534, 684
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	2 cut(s)	31, 730
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	15, 21, 534, 684
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	4 cut(s)	31, 236, 297, 418
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	51, 488
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	108, 375, 411, 599
MspR9I	CCNGG	3 cut(s)	33, 109, 599
MunI	CAATTG	3 cut(s)	21, 534, 684
Mva1269I	GAATGC	2 cut(s)	275, 433
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	7 cut(s)	26, 62, 71, 530, 572, 686, 689
NciI	CCSGG	2 cut(s)	109, 599
NdeII	GATC	4 cut(s)	152, 338, 493, 672
NlaIII	CATG	5 cut(s)	127, 251, 595, 639, 734
NlaIV	GGNNCC	3 cut(s)	30, 495, 553
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	327
NspI	RCATGY	1 cut(s)	251
OliI	CACNNNNGTG	1 cut(s)	488
PagI	TCATGA	1 cut(s)	730
PciI	ACATGT	1 cut(s)	247
PctI	GAATGC	2 cut(s)	275, 433
PdmI	GAANNNNTTC	1 cut(s)	738
PkrI	GCNGC	6 cut(s)	67, 181, 330, 394, 682, 691
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
PscI	ACATGT	1 cut(s)	247
Psp124BI	GAGCTC	1 cut(s)	730
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	30, 495, 553
PspPI	GGNCC	3 cut(s)	306, 614, 665
PstNI	CAGNNNCTG	1 cut(s)	334
PsuI	RGATCY	1 cut(s)	493
RseI	CAYNNNNRTG	2 cut(s)	51, 488
SacI	GAGCTC	1 cut(s)	730
SatI	GCNGC	6 cut(s)	66, 180, 329, 393, 681, 690
Sau3AI	GATC	4 cut(s)	152, 338, 493, 672
Sau96I	GGNCC	3 cut(s)	306, 614, 665
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	3 cut(s)	33, 109, 599
SduI	GDGCHC	2 cut(s)	31, 730
SetI	ASST	7 cut(s)	118, 141, 181, 333, 458, 711, 730
SfaNI	GCATC	3 cut(s)	43, 191, 596
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	2 cut(s)	614, 665
SmiMI	CAYNNNNRTG	2 cut(s)	51, 488
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	4 cut(s)	15, 21, 534, 684
SsiI	CCGC	3 cut(s)	215, 378, 737
SspMI	CTAG	2 cut(s)	12, 757
SstI	GAGCTC	1 cut(s)	730
StyD4I	CCNGG	3 cut(s)	31, 107, 597
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	3 cut(s)	134, 165, 475
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	4 cut(s)	15, 21, 534, 684
TscAI	CASTG	3 cut(s)	478, 495, 653
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	6 cut(s)	65, 179, 328, 392, 680, 689
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	608, 703, 747
TspRI	CASTG	3 cut(s)	478, 495, 653
VpaK11BI	GGWCC	2 cut(s)	614, 665
XbaI	TCTAGA	1 cut(s)	11
XceI	RCATGY	1 cut(s)	251
XcmI	CCANNNNNNNNNTGG	1 cut(s)	379
XmiI	GTMKAC	2 cut(s)	468, 654
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	2 cut(s)	12, 757

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.