Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0015828

Physical Location & Seq

Genomic Coordinates Forward (+)

25454352 .. 25455937

Gene Structure 1586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGCCAATCAATAAAATTGCAGTTGGGACGCCAGGAGAGGCAAGCCACCCTGATGCCATAAGGGCTGCCTTTGCTGAGTTTTTCTCTACGCTCATCTTTGTTTTTGCTGGGGAAGGCTCTGGCATGGCTTTCAACAAGCTAACTAACAACGGATCAACCACACCGTCTGGGCTTGTAGCTGCATCATTGGCACATGCTTTTGCACTTTTTGTTGCGGTCTCTGTGGGTGCAAATATTTCCGGGGGTCATGTAAACCCTGCTGTCACATTTGGCGCATTCATTGGTGGCAACATAACTCTGTTGAGAGGCATTTTGTATTGGATTGCACAGTTGCTTGGATCAGTTGTTGCTTGCTTGCTACTCAAGTTTGCCACCGGTGGATGGGAAACGGCAGCATTCTCTCTGTCGTCTGGTGTGTCAGTCTGGAATGCTCTAGTGTTTGAGATTGTGATGACCTTCGGCTTGGTCTACACAGTGTATGCCACAGCAGTTGATCCAAAGAAGGGCAATGTAGGCATTGTTGCACCTATCGCAATTGGTTTGATTGTTGGTGCCAACATTTTGGCTGGTGGTGCGTTTGATGGTGCATCCATGAACCCAGCAGTGTCGTTTGGGCCTGCTGTTGTCAGCTGGTCATGGACTCACCACTGGGTCTATTGGGCTGGCCCATTGATTGGTGCTGCCGTTGCAGCGCTTGTCTATGACAACATCTTCATTGGTGATGGGGCCCACGAACCCCTACCCAACAATGATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009705 GO:0015204 GO:0015250 GO:0015267 GO:0015318 GO:0015840 GO:0016020 GO:0016021 GO:0019755 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0042807 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071918 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

253

Amino Acids

25.87

Weight (kDa)

5.54

Isoelectric Point (pI)

22.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01470
fragaria_vesca	FvH4_7g21520
malus_domestica	MD01G1121900.v1.1
prunus_persica	Prupe.2G229500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0365831
rosa_laevigata	RLG00000027388
rosa_multiflora	Rmu_sc0004311.1_g000001 Rmu_sc0023137.1_g000003
rosa_roxburghii	Rroxscaffold_4G00290830
rosa_rugosa	Rorug01G0324900
rosa_samantha	Rh1AG333800 Rh1BG294400 Rh1CG311100 Rh1DG326800
rosa_wichuraiana	Rw1G029610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccB7I	CCANNNNNTGG	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	468
AciI	CCGC	1 cut(s)	215
AclWI	GGATC	3 cut(s)	160, 346, 488
AcyI	GRCGYC	1 cut(s)	29
AfeI	AGCGCT	1 cut(s)	693
AfiI	CCNNNNNNNGG	3 cut(s)	381, 503, 674
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	3 cut(s)	139, 179, 630
AluI	AGCT	3 cut(s)	139, 179, 630
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	3 cut(s)	160, 346, 488
Aor51HI	AGCGCT	1 cut(s)	693
AoxI	GGCC	3 cut(s)	614, 664, 726
ApaI	GGGCCC	1 cut(s)	730
ApeKI	GCWGC	5 cut(s)	65, 179, 392, 680, 689
AsiGI	ACCGGT	1 cut(s)	374
AspLEI	GCGC	2 cut(s)	275, 694
AspS9I	GGNCC	4 cut(s)	614, 665, 726, 727
AsuC2I	CCSGG	1 cut(s)	241
AsuHPI	GGTGA	2 cut(s)	635, 731
BaeGI	GKGCMC	1 cut(s)	730
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	730
BbvI	GCAGC	5 cut(s)	52, 166, 404, 667, 701
BccI	CCATC	3 cut(s)	375, 575, 716
BceAI	ACGGC	2 cut(s)	405, 668
BciT130I	CCWGG	1 cut(s)	33
BcnI	CCSGG	1 cut(s)	241
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	695
BglI	GCCNNNNNGGC	1 cut(s)	62
BisI	GCNGC	5 cut(s)	66, 180, 393, 681, 690
BlsI	GCNGC	5 cut(s)	67, 181, 394, 682, 691
Bme1390I	CCNGG	2 cut(s)	33, 241
BmgT120I	GGNCC	4 cut(s)	614, 665, 726, 727
BmiI	GGNNCC	3 cut(s)	553, 727, 728
BmrFI	CCNGG	2 cut(s)	33, 241
BmrI	ACTGGG	1 cut(s)	658
BmsI	GCATC	3 cut(s)	43, 191, 596
BmuI	ACTGGG	1 cut(s)	658
BplI	GAGNNNNNCTC	2 cut(s)	68, 100
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	241
BsaHI	GRCGYC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	3 cut(s)	381, 503, 674
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	653
Bse3DI	GCAATG	1 cut(s)	514
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	386, 587
BseLI	CCNNNNNNNGG	3 cut(s)	381, 503, 674
BseMI	GCAATG	1 cut(s)	514
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	653
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	5 cut(s)	52, 166, 404, 667, 701
BseYI	CCCAGC	2 cut(s)	107, 598
BshFI	GGCC	3 cut(s)	616, 666, 728
BshNI	GGYRCC	1 cut(s)	551
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	240, 375
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	381, 503, 674
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	1 cut(s)	40
BsmI	GAATGC	3 cut(s)	275, 395, 433
BsnI	GGCC	3 cut(s)	616, 666, 728
Bso31I	GGTCTC	1 cut(s)	223
Bsp120I	GGGCCC	1 cut(s)	726
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	3 cut(s)	152, 338, 493
BspACI	CCGC	1 cut(s)	215
BspANI	GGCC	3 cut(s)	616, 666, 728
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	3 cut(s)	553, 727, 728
BspPI	GGATC	3 cut(s)	160, 346, 488
BspT107I	GGYRCC	1 cut(s)	551
BspTNI	GGTCTC	1 cut(s)	223
BsrDI	GCAATG	1 cut(s)	514
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	653
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	240
BssMI	GATC	3 cut(s)	152, 338, 493
BssNI	GRCGYC	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	3 cut(s)	165, 330, 475
BstACI	GRCGYC	1 cut(s)	29
BstC8I	GCNNGC	5 cut(s)	43, 352, 356, 618, 664
BstDEI	CTNAG	1 cut(s)	75
BstF5I	GGATG	2 cut(s)	386, 587
BstH2I	RGCGCY	1 cut(s)	695
BstHHI	GCGC	2 cut(s)	275, 694
BstKTI	GATC	3 cut(s)	155, 341, 496
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	3 cut(s)	152, 338, 493
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 513, 530, 572, 686, 689
BstNI	CCWGG	1 cut(s)	33
BstNSI	RCATGY	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	31, 239
BstSLI	GKGCMC	1 cut(s)	730
BstV1I	GCAGC	5 cut(s)	52, 166, 404, 667, 701
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuRI	GGCC	3 cut(s)	616, 666, 728
BtsCI	GGATG	2 cut(s)	386, 587
BtsI	GCAGTG	1 cut(s)	609
BtsIMutI	CAGTG	3 cut(s)	480, 609, 646
Cac8I	GCNNGC	5 cut(s)	43, 352, 356, 618, 664
CfoI	GCGC	2 cut(s)	275, 694
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	614, 665, 726, 727
CseI	GACGC	1 cut(s)	37
CspAI	ACCGGT	1 cut(s)	374
CspCI	CAANNNNNGTGG	2 cut(s)	472, 507
CviAII	CATG	5 cut(s)	124, 194, 248, 592, 636
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	154, 340, 495
DpnII	GATC	3 cut(s)	152, 338, 493
Eco24I	GRGCYC	1 cut(s)	730
Eco31I	GGTCTC	1 cut(s)	223
Eco47III	AGCGCT	1 cut(s)	693
EcoO109I	RGGNCCY	1 cut(s)	726
EcoRII	CCWGG	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	730
FaeI	CATG	5 cut(s)	127, 197, 251, 595, 639
FaiI	YATR	9 cut(s)	59, 125, 195, 249, 293, 480, 593, 637, 702
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	123, 193, 247, 591, 635
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	5 cut(s)	66, 180, 393, 681, 690
FokI	GGATG	2 cut(s)	393, 574
FriOI	GRGCYC	1 cut(s)	730
Fsp4HI	GCNGC	5 cut(s)	66, 180, 393, 681, 690
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	2 cut(s)	274, 693
GluI	GCNGC	5 cut(s)	66, 180, 393, 681, 690
GsaI	CCCAGC	2 cut(s)	111, 602
HaeII	RGCGCY	1 cut(s)	695
HaeIII	GGCC	3 cut(s)	616, 666, 728
HapII	CCGG	2 cut(s)	240, 375
HgaI	GACGC	1 cut(s)	37
HhaI	GCGC	2 cut(s)	275, 694
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	5 cut(s)	127, 197, 251, 595, 639
Hin6I	GCGC	2 cut(s)	273, 692
HinP1I	GCGC	2 cut(s)	273, 692
HinfI	GANTC	1 cut(s)	640
HpaII	CCGG	2 cut(s)	240, 375
HphI	GGTGA	2 cut(s)	635, 731
Hpy166II	GTNNAC	2 cut(s)	253, 469
Hpy188III	TCNNGA	1 cut(s)	424
Hpy8I	GTNNAC	2 cut(s)	253, 469
HpyAV	CCTTC	3 cut(s)	107, 466, 496
HpyCH4III	ACNGT	3 cut(s)	165, 330, 475
HpyCH4V	TGCA	8 cut(s)	20, 182, 203, 230, 326, 524, 587, 689
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 513, 530, 572, 686, 689
HpyF3I	CTNAG	1 cut(s)	75
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	5 cut(s)	127, 197, 251, 595, 639
HspAI	GCGC	2 cut(s)	273, 692
Kzo9I	GATC	3 cut(s)	152, 338, 493
Lsp1109I	GCAGC	5 cut(s)	52, 166, 404, 667, 701
LweI	GCATC	3 cut(s)	43, 191, 596
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	154, 340, 495
MboI	GATC	3 cut(s)	152, 338, 493
MboII	GAAGA	1 cut(s)	703
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	730
MluCI	AATT	2 cut(s)	15, 534
MlyI	GAGTC	1 cut(s)	634
MnlI	CCTC	2 cut(s)	31, 299
MslI	CAYNNNNRTG	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	630
MspI	CCGG	2 cut(s)	240, 375
MspR9I	CCNGG	2 cut(s)	33, 241
MunI	CAATTG	1 cut(s)	534
Mva1269I	GAATGC	3 cut(s)	275, 395, 433
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	8 cut(s)	62, 71, 188, 513, 530, 572, 686, 689
NciI	CCSGG	1 cut(s)	241
NdeII	GATC	3 cut(s)	152, 338, 493
NlaIII	CATG	5 cut(s)	127, 197, 251, 595, 639
NlaIV	GGNNCC	3 cut(s)	553, 727, 728
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	197
PctI	GAATGC	3 cut(s)	275, 395, 433
PflMI	CCANNNNNTGG	1 cut(s)	674
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	5 cut(s)	67, 181, 394, 682, 691
PleI	GAGTC	1 cut(s)	634
PpsI	GAGTC	1 cut(s)	634
Psp6I	CCWGG	1 cut(s)	31
PspFI	CCCAGC	2 cut(s)	107, 598
PspGI	CCWGG	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	553, 727, 728
PspOMI	GGGCCC	1 cut(s)	726
PspPI	GGNCC	4 cut(s)	614, 665, 726, 727
PvuII	CAGCTG	1 cut(s)	630
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	5 cut(s)	66, 180, 393, 681, 690
Sau3AI	GATC	3 cut(s)	152, 338, 493
Sau96I	GGNCC	4 cut(s)	614, 665, 726, 727
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	33, 241
SduI	GDGCHC	1 cut(s)	730
SetI	ASST	5 cut(s)	141, 181, 458, 529, 632
SfaNI	GCATC	3 cut(s)	43, 191, 596
SgrAI	CRCCGGYG	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	51
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	2 cut(s)	15, 534
SsiI	CCGC	1 cut(s)	215
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	2 cut(s)	31, 239
TaaI	ACNGT	3 cut(s)	165, 330, 475
TasI	AATT	2 cut(s)	15, 534
TscAI	CASTG	3 cut(s)	480, 609, 653
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	5 cut(s)	65, 179, 392, 680, 689
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	268, 608, 703
TspGWI	ACGGA	1 cut(s)	165
TspRI	CASTG	3 cut(s)	480, 609, 653
Van91I	CCANNNNNTGG	1 cut(s)	674
XceI	RCATGY	1 cut(s)	197
XmiI	GTMKAC	1 cut(s)	468
XspI	CTAG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.