Rorug01G0324900

Belongs to the universal ribosomal protein uS3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000399
Physical Location & Seq
Forward (+)
44410394 .. 44419629
9236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0324900.1

Sequence Viewer

Length: 690 bp
ATGGAGTATCGATGTGTGGAATGTGGGGCTCGAATGATGAGGCTTTTCGTTCAATACTCACCTGGAAATATTCGACTCATGAAATGCGATAATTGCAAGGCAGTTGCGGACGAGTACATCGAGTGCGAGCCCATAATTATTCTGATTGATTTGATTCTGCACAAGAAGAAAGCTTATACCCATTTGCTATATAATGTGATTGACTCGCAAGCTCCCGCCTTTCAGGGTTTGTTGTGGAAGTCAGCTTTCGGGTTTCTTCTTTTGGATGCTTATAGGAGTTTATTTCTGGAAAGGACCAGGGAAGAGTGGGGTTTGTCCATGAGCTTTGCTTCTTTGCTTTGGAGGTTTCAAAATATGCTGATGGATGTTGTCTTTGGGAATTTCATGTTTTTTTCTACCTTTGTGCTTGCTACGAGGGCTCTTTTCAGCAAATTCCCTAGATCACTCGGGTACAAAGACCTTCTGCTGGCAATACTTATTTCAAGTTACTTCAAGATGTTTCTAATTGCAATGATGGTCTGGGAATGTCCTTCTGTGATTTTGATCATTGATTTATTTGTATTATCCTCCAACACTGTGGCACTCAAAGTGATAACTCGGTCAGCTATGAGTAGATGTATAGCAGCCTGCTTCAGTGCTCATGCTGTAAAGTTTTTAGTCACACAAAGGTGCTGGACTTGGGAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KH_2 Ribosomal_S3_C

Protein Analysis

229

Amino Acids

26.56

Weight (kDa)

8.85

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arv1 PF04161 4 - 195 1.1e-49 Arv1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 107, 216
AcsI RAATTY 2 cut(s) 379, 431
AcuI CTGAAG 1 cut(s) 616
AfaI GTAC 2 cut(s) 116, 452
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 4 cut(s) 53, 350, 483, 493
AjnI CCWGG 2 cut(s) 61, 296
AleI CACNNNNGTG 1 cut(s) 667
AluBI AGCT 5 cut(s) 173, 212, 245, 324, 605
AluI AGCT 5 cut(s) 173, 212, 245, 324, 605
Alw21I GWGCWC 1 cut(s) 640
Ama87I CYCGRG 1 cut(s) 446
ApeKI GCWGC 1 cut(s) 623
ApoI RAATTY 2 cut(s) 379, 431
AspS9I GGNCC 1 cut(s) 294
AsuHPI GGTGA 1 cut(s) 51
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 294
BanII GRGCYC 3 cut(s) 31, 132, 421
Bbv12I GWGCWC 1 cut(s) 640
BbvI GCAGC 1 cut(s) 635
BccI CCATC 2 cut(s) 355, 508
BciT130I CCWGG 2 cut(s) 63, 298
BclI TGATCA 1 cut(s) 543
BfaI CTAG 1 cut(s) 438
BisI GCNGC 1 cut(s) 624
BlsI GCNGC 1 cut(s) 625
Bme1390I CCNGG 2 cut(s) 63, 298
Bme18I GGWCC 1 cut(s) 294
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 2 cut(s) 63, 298
BmsI GCATC 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 10
BsaBI GATNNNNATC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 297
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse3DI GCAATG 1 cut(s) 516
Bse8I GATNNNNATC 1 cut(s) 542
BseBI CCWGG 2 cut(s) 63, 298
BseCI ATCGAT 1 cut(s) 10
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 2 cut(s) 271, 370
BseJI GATNNNNATC 1 cut(s) 542
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMI GCAATG 1 cut(s) 516
BseXI GCAGC 1 cut(s) 635
BsgI GTGCAG 1 cut(s) 143
BshVI ATCGAT 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 640
BsiHKCI CYCGRG 1 cut(s) 446
BslI CCNNNNNNNGG 1 cut(s) 466
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 4 cut(s) 31, 132, 421, 640
Bsp143I GATC 2 cut(s) 440, 543
BspACI CCGC 2 cut(s) 107, 216
BspDI ATCGAT 1 cut(s) 10
BspHI TCATGA 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 516
BssECI CCNNGG 1 cut(s) 297
BssMI GATC 2 cut(s) 440, 543
Bst2UI CCWGG 2 cut(s) 63, 298
Bst4CI ACNGT 1 cut(s) 577
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 5 cut(s) 128, 210, 408, 468, 628
BstF5I GGATG 2 cut(s) 271, 370
BstKTI GATC 2 cut(s) 443, 546
BstMBI GATC 2 cut(s) 440, 543
BstMWI GCNNNNNNNGC 2 cut(s) 93, 416
BstNI CCWGG 2 cut(s) 63, 298
BstSCI CCNGG 2 cut(s) 61, 296
BstV1I GCAGC 1 cut(s) 635
BstXI CCANNNNNNTGG 1 cut(s) 577
Bsu15I ATCGAT 1 cut(s) 10
BsuTUI ATCGAT 1 cut(s) 10
BtsCI GGATG 2 cut(s) 271, 370
BtsIMutI CAGTG 2 cut(s) 573, 640
Cac8I GCNNGC 5 cut(s) 128, 210, 408, 468, 628
CciI TCATGA 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 10
Csp6I GTAC 2 cut(s) 115, 451
CviAII CATG 4 cut(s) 79, 319, 385, 641
CviQI GTAC 2 cut(s) 115, 451
DpnI GATC 2 cut(s) 442, 545
DpnII GATC 2 cut(s) 440, 543
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco24I GRGCYC 3 cut(s) 31, 132, 421
Eco47I GGWCC 1 cut(s) 294
Eco57I CTGAAG 1 cut(s) 616
Eco88I CYCGRG 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 61, 296
EcoT38I GRGCYC 3 cut(s) 31, 132, 421
FaeI CATG 4 cut(s) 82, 322, 388, 644
FatI CATG 4 cut(s) 78, 318, 384, 640
FauI CCCGC 1 cut(s) 223
FbaI TGATCA 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 624
FokI GGATG 2 cut(s) 278, 377
FriOI GRGCYC 3 cut(s) 31, 132, 421
Fsp4HI GCNGC 1 cut(s) 624
FspBI CTAG 1 cut(s) 438
GluI GCNGC 1 cut(s) 624
Hin1II CATG 4 cut(s) 82, 322, 388, 644
HindIII AAGCTT 1 cut(s) 171
HinfI GANTC 3 cut(s) 75, 154, 203
HphI GGTGA 1 cut(s) 51
Hpy188I TCNGA 1 cut(s) 144
Hpy188III TCNNGA 3 cut(s) 79, 287, 493
HpyAV CCTTC 2 cut(s) 470, 540
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4V TGCA 3 cut(s) 96, 160, 509
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 416
Hsp92II CATG 4 cut(s) 82, 322, 388, 644
Ksp22I TGATCA 1 cut(s) 543
Kzo9I GATC 2 cut(s) 440, 543
LmnI GCTCC 1 cut(s) 217
Lsp1109I GCAGC 1 cut(s) 635
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 438
MaeIII GTNAC 2 cut(s) 485, 658
MalI GATC 2 cut(s) 442, 545
MboI GATC 2 cut(s) 440, 543
MboII GAAGA 3 cut(s) 178, 248, 314
MhlI GDGCHC 4 cut(s) 31, 132, 421, 640
MluCI AATT 5 cut(s) 91, 135, 379, 431, 504
MlyI GAGTC 2 cut(s) 69, 197
MmeI TCCRAC 1 cut(s) 594
MnlI CCTC 4 cut(s) 33, 336, 408, 577
MslI CAYNNNNRTG 1 cut(s) 667
MspR9I CCNGG 2 cut(s) 63, 298
MvaI CCWGG 2 cut(s) 63, 298
MwoI GCNNNNNNNGC 2 cut(s) 93, 416
NdeII GATC 2 cut(s) 440, 543
NlaIII CATG 4 cut(s) 82, 322, 388, 644
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 667
PagI TCATGA 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PfeI GAWTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 625
PleI GAGTC 2 cut(s) 69, 197
PpsI GAGTC 2 cut(s) 69, 197
Psp6I CCWGG 2 cut(s) 61, 296
PspGI CCWGG 2 cut(s) 61, 296
PspPI GGNCC 1 cut(s) 294
RsaI GTAC 2 cut(s) 116, 452
RsaNI GTAC 2 cut(s) 115, 451
RseI CAYNNNNRTG 1 cut(s) 667
SatI GCNGC 1 cut(s) 624
Sau3AI GATC 2 cut(s) 440, 543
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 2 cut(s) 69, 197
ScrFI CCNGG 2 cut(s) 63, 298
SduI GDGCHC 4 cut(s) 31, 132, 421, 640
SfaNI GCATC 1 cut(s) 256
SinI GGWCC 1 cut(s) 294
SmiMI CAYNNNNRTG 1 cut(s) 667
Sse9I AATT 5 cut(s) 91, 135, 379, 431, 504
SsiI CCGC 2 cut(s) 107, 216
SspI AATATT 1 cut(s) 70
SspMI CTAG 1 cut(s) 438
StyD4I CCNGG 2 cut(s) 61, 296
TaaI ACNGT 1 cut(s) 577
TaqI TCGA 4 cut(s) 10, 31, 73, 120
TaqII GACCGA 1 cut(s) 588
TasI AATT 5 cut(s) 91, 135, 379, 431, 504
TatI WGTACW 1 cut(s) 114
TfiI GAWTC 1 cut(s) 154
TscAI CASTG 2 cut(s) 580, 640
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 1 cut(s) 623
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 2 cut(s) 95, 373
TspRI CASTG 2 cut(s) 580, 640
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 2 cut(s) 379, 431
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.