Rmu_sc0030012.1_g000001

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0030012.1
OG0000399
Physical Location & Seq
Forward (+)
75 .. 1106
1032 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0030012.1_g000001.1.cds

Sequence Viewer

Length: 1032 bp
atggccgatacgtcgaaacttcttccagatgagttggttgaccccgcagccacagtttctcgtgaagcaactcgagttccattgcttatgatacccaggaagaaggatacaaccgtcactgagttttacgacttggagatggacacgctttactcatcgaaactgcctgaacttaagggcaaattattttgttattcttcttctggaggatggctggtgactctatcagagtacaacgagcttgatctgctcaatcctttgaatcatcatgaccaatatgagctgccagattctaagagcgtgagtaattccatcccaaagaagtttgttttatcatccagcccttctccgacatcggattgcatagtgatggctctttatgagtgcggcaaattggaattctgtagtctaggaaaggatatagtatggacaagtatagtttcattcgggagaacagtaccatttttcgatctaactttttgtaagggagaattttatgttttgggccctaaaaatgtttgtgtttgtgactttgaagatcctaagcaagcacgtacgagaattgttggtccagaaatcccaggagaacttaggagtcttgaaggaaagagatatttggtggaatcagcaggctctttactaatggtcttgtatattgagcagcttggaatcaacaacatcgacgttcaaggaggatacaactccatctctgcatttagggtctttgaggtgccattcagtaacaatagttgttggttcgactccgagataaaggatttggggaatagaaccatcttcttgggtgaaaatcattccttctccgtcgatgcctcaaataacttcggagtcaagtacaattgtatttactttgcatacgattcgccatgtaaagaagaaatgatcgagatgggtatttttaacatgaaagacggaaagatcgagcgacccttcaaagttgtttcgagtggaagcaatacacatgagactcttataccacaccatttgtggattcaacaaggtcttttagtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box

Protein Analysis

343

Amino Acids

38.56

Weight (kDa)

5.0

Isoelectric Point (pI)

38.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000399)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 730
AciI CCGC 2 cut(s) 45, 387
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 398, 491
AfaI GTAC 4 cut(s) 233, 459, 556, 854
AflII CTTAAG 1 cut(s) 173
AgsI TTSAA 6 cut(s) 262, 536, 602, 689, 952, 1013
AjnI CCWGG 2 cut(s) 95, 580
AluBI AGCT 3 cut(s) 241, 283, 664
AluI AGCT 3 cut(s) 241, 283, 664
Alw26I GTCTC 1 cut(s) 977
AlwI GGATC 1 cut(s) 533
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 2 cut(s) 3, 505
ApaI GGGCCC 1 cut(s) 509
ApeKI GCWGC 3 cut(s) 47, 283, 661
ApoI RAATTY 2 cut(s) 398, 491
AspS9I GGNCC 3 cut(s) 505, 506, 569
AsuHPI GGTGA 2 cut(s) 229, 815
AvaI CYCGRG 1 cut(s) 72
AvaII GGWCC 1 cut(s) 569
BaeGI GKGCMC 1 cut(s) 509
BaeI ACNNNNGTAYC 2 cut(s) 99, 132
BanI GGYRCC 1 cut(s) 730
BanII GRGCYC 1 cut(s) 509
BauI CACGAG 1 cut(s) 60
BbvI GCAGC 3 cut(s) 59, 270, 673
BccI CCATC 7 cut(s) 133, 204, 320, 364, 713, 800, 901
BcgI CGANNNNNNTGC 2 cut(s) 861, 895
BciT130I CCWGG 2 cut(s) 97, 582
BciVI GTATCC 2 cut(s) 100, 689
BcoDI GTCTC 1 cut(s) 977
BfaI CTAG 1 cut(s) 410
BfmI CTRYAG 1 cut(s) 403
BfrI CTTAAG 1 cut(s) 173
BfuI GTATCC 2 cut(s) 100, 689
BisI GCNGC 4 cut(s) 48, 284, 388, 662
BlsI GCNGC 4 cut(s) 49, 285, 389, 663
Bme1390I CCNGG 2 cut(s) 97, 582
Bme18I GGWCC 1 cut(s) 569
BmeT110I CYCGRG 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 505, 506, 569
BmiI GGNNCC 2 cut(s) 507, 732
BmrFI CCNGG 2 cut(s) 97, 582
BmsI GCATC 1 cut(s) 817
BpmI CTGGAG 1 cut(s) 225
Bpu10I CCTNAGC 1 cut(s) 543
BsaAI YACGTR 1 cut(s) 554
BsaJI CCNNGG 2 cut(s) 95, 580
Bse3DI GCAATG 1 cut(s) 80
BseBI CCWGG 2 cut(s) 97, 582
BseDI CCNNGG 2 cut(s) 95, 580
BseGI GGATG 3 cut(s) 215, 312, 335
BseMI GCAATG 1 cut(s) 80
BseMII CTCAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 509
BseXI GCAGC 3 cut(s) 59, 270, 673
BshFI GGCC 2 cut(s) 5, 507
BshNI GGYRCC 1 cut(s) 730
BsiHKCI CYCGRG 1 cut(s) 72
BsiWI CGTACG 1 cut(s) 554
BsmAI GTCTC 1 cut(s) 977
BsnI GGCC 2 cut(s) 5, 507
BsoBI CYCGRG 1 cut(s) 72
Bsp120I GGGCCC 1 cut(s) 505
Bsp1286I GDGCHC 1 cut(s) 509
Bsp143I GATC 5 cut(s) 244, 469, 538, 900, 936
BspACI CCGC 2 cut(s) 45, 387
BspANI GGCC 2 cut(s) 5, 507
BspCNI CTCAG 1 cut(s) 112
BspHI TCATGA 1 cut(s) 268
BspLI GGNNCC 2 cut(s) 507, 732
BspPI GGATC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 730
BspTI CTTAAG 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 95, 580
BssMI GATC 5 cut(s) 244, 469, 538, 900, 936
BssSI CACGAG 1 cut(s) 60
Bst2BI CACGAG 1 cut(s) 60
Bst2UI CCWGG 2 cut(s) 97, 582
Bst4CI ACNGT 3 cut(s) 55, 115, 457
BstAFI CTTAAG 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 554
BstC8I GCNNGC 2 cut(s) 549, 631
BstDEI CTNAG 4 cut(s) 120, 294, 543, 590
BstF5I GGATG 3 cut(s) 215, 312, 335
BstKTI GATC 5 cut(s) 247, 472, 541, 903, 939
BstMAI GTCTC 1 cut(s) 977
BstMBI GATC 5 cut(s) 244, 469, 538, 900, 936
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNI CCWGG 2 cut(s) 97, 582
BstSCI CCNGG 2 cut(s) 95, 580
BstSFI CTRYAG 1 cut(s) 403
BstSLI GKGCMC 1 cut(s) 509
BstV1I GCAGC 3 cut(s) 59, 270, 673
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 799
BstYI RGATCY 1 cut(s) 538
BsuI GTATCC 2 cut(s) 100, 689
BsuRI GGCC 2 cut(s) 5, 507
BtsCI GGATG 3 cut(s) 215, 312, 335
BtsIMutI CAGTG 1 cut(s) 117
Cac8I GCNNGC 2 cut(s) 549, 631
CciI TCATGA 1 cut(s) 268
Cfr13I GGNCC 3 cut(s) 505, 506, 569
Csp6I GTAC 4 cut(s) 232, 458, 555, 853
CspCI CAANNNNNGTGG 2 cut(s) 984, 1019
CviAII CATG 4 cut(s) 269, 885, 922, 980
CviQI GTAC 4 cut(s) 232, 458, 555, 853
DdeI CTNAG 4 cut(s) 120, 294, 543, 590
DpnI GATC 5 cut(s) 246, 471, 540, 902, 938
DpnII GATC 5 cut(s) 244, 469, 538, 900, 936
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 569
Eco88I CYCGRG 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 506
EcoRI GAATTC 1 cut(s) 398
EcoRII CCWGG 2 cut(s) 95, 580
EcoT38I GRGCYC 1 cut(s) 509
FaeI CATG 4 cut(s) 272, 888, 925, 983
FatI CATG 4 cut(s) 268, 884, 921, 979
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 4 cut(s) 48, 284, 388, 662
FokI GGATG 3 cut(s) 222, 299, 322
FriOI GRGCYC 1 cut(s) 509
Fsp4HI GCNGC 4 cut(s) 48, 284, 388, 662
FspBI CTAG 1 cut(s) 410
GluI GCNGC 4 cut(s) 48, 284, 388, 662
GsuI CTGGAG 1 cut(s) 225
HaeIII GGCC 2 cut(s) 5, 507
Hin1II CATG 4 cut(s) 272, 888, 925, 983
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HphI GGTGA 2 cut(s) 229, 815
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 5 cut(s) 229, 351, 358, 766, 845
Hpy188III TCNNGA 8 cut(s) 26, 62, 204, 269, 448, 572, 599, 904
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 3 cut(s) 16, 686, 827
HpyAV CCTTC 5 cut(s) 97, 354, 596, 826, 958
HpyCH4III ACNGT 3 cut(s) 55, 115, 457
HpyCH4IV ACGT 3 cut(s) 11, 553, 684
HpyCH4V TGCA 3 cut(s) 363, 713, 872
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpyF3I CTNAG 4 cut(s) 120, 294, 543, 590
HpySE526I ACGT 3 cut(s) 11, 553, 684
Hsp92II CATG 4 cut(s) 272, 888, 925, 983
Kzo9I GATC 5 cut(s) 244, 469, 538, 900, 936
Lsp1109I GCAGC 3 cut(s) 59, 270, 673
LweI GCATC 1 cut(s) 817
MaeI CTAG 1 cut(s) 410
MaeII ACGT 3 cut(s) 11, 553, 684
MaeIII GTNAC 4 cut(s) 115, 217, 527, 740
MalI GATC 5 cut(s) 246, 471, 540, 902, 938
MboI GATC 5 cut(s) 244, 469, 538, 900, 936
MboII GAAGA 7 cut(s) 14, 112, 189, 192, 548, 787, 905
MfeI CAATTG 1 cut(s) 856
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 1 cut(s) 509
MluCI AATT 7 cut(s) 182, 307, 392, 398, 491, 561, 856
MlyI GAGTC 5 cut(s) 214, 604, 755, 855, 979
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 4 cut(s) 200, 686, 721, 841
MseI TTAA 3 cut(s) 174, 918, 1030
MslI CAYNNNNRTG 1 cut(s) 368
MspCI CTTAAG 1 cut(s) 173
MspR9I CCNGG 2 cut(s) 97, 582
MunI CAATTG 1 cut(s) 856
MvaI CCWGG 2 cut(s) 97, 582
MwoI GCNNNNNNNGC 1 cut(s) 247
NdeII GATC 5 cut(s) 244, 469, 538, 900, 936
NlaIII CATG 4 cut(s) 272, 888, 925, 983
NlaIV GGNNCC 2 cut(s) 507, 732
NmuCI GTSAC 3 cut(s) 115, 217, 527
PaeR7I CTCGAG 1 cut(s) 72
PagI TCATGA 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 936
PfeI GAWTC 6 cut(s) 262, 290, 623, 669, 878, 1009
Pfl23II CGTACG 1 cut(s) 554
PkrI GCNGC 4 cut(s) 49, 285, 389, 663
PleI GAGTC 5 cut(s) 214, 603, 755, 854, 979
PpsI GAGTC 5 cut(s) 214, 603, 755, 854, 979
Ppu21I YACGTR 1 cut(s) 554
Psp6I CCWGG 2 cut(s) 95, 580
PspGI CCWGG 2 cut(s) 95, 580
PspLI CGTACG 1 cut(s) 554
PspN4I GGNNCC 2 cut(s) 507, 732
PspOMI GGGCCC 1 cut(s) 505
PspPI GGNCC 3 cut(s) 505, 506, 569
PspXI VCTCGAGB 1 cut(s) 72
PsuI RGATCY 1 cut(s) 538
RsaI GTAC 4 cut(s) 233, 459, 556, 854
RsaNI GTAC 4 cut(s) 232, 458, 555, 853
RseI CAYNNNNRTG 1 cut(s) 368
SaqAI TTAA 3 cut(s) 174, 918, 1030
SatI GCNGC 4 cut(s) 48, 284, 388, 662
Sau3AI GATC 5 cut(s) 244, 469, 538, 900, 936
Sau96I GGNCC 3 cut(s) 505, 506, 569
SchI GAGTC 5 cut(s) 214, 604, 755, 855, 979
ScrFI CCNGG 2 cut(s) 97, 582
SduI GDGCHC 1 cut(s) 509
SetI ASST 8 cut(s) 14, 243, 285, 556, 666, 687, 732, 1021
SfaNI GCATC 1 cut(s) 817
SfcI CTRYAG 1 cut(s) 403
Sfr274I CTCGAG 1 cut(s) 72
SinI GGWCC 1 cut(s) 569
SlaI CTCGAG 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 2 cut(s) 72, 173
SmoI CTYRAG 2 cut(s) 72, 173
Sse9I AATT 7 cut(s) 182, 307, 392, 398, 491, 561, 856
SsiI CCGC 2 cut(s) 45, 387
SspMI CTAG 1 cut(s) 410
StyD4I CCNGG 2 cut(s) 95, 580
TaaI ACNGT 3 cut(s) 55, 115, 457
TaiI ACGT 3 cut(s) 14, 556, 687
TasI AATT 7 cut(s) 182, 307, 392, 398, 491, 561, 856
TatI WGTACW 2 cut(s) 231, 852
TauI GCSGC 1 cut(s) 390
TfiI GAWTC 6 cut(s) 262, 290, 623, 669, 878, 1009
Tru1I TTAA 3 cut(s) 174, 918, 1030
Tru9I TTAA 3 cut(s) 174, 918, 1030
TscAI CASTG 1 cut(s) 124
TseFI GTSAC 3 cut(s) 115, 217, 527
TseI GCWGC 3 cut(s) 47, 283, 661
Tsp45I GTSAC 3 cut(s) 115, 217, 527
TspDTI ATGAA 2 cut(s) 432, 938
TspGWI ACGGA 2 cut(s) 811, 945
TspRI CASTG 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 569
XapI RAATTY 2 cut(s) 398, 491
XcmI CCANNNNNNNNNTGG 1 cut(s) 1002
XhoI CTCGAG 1 cut(s) 72
XspI CTAG 1 cut(s) 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.