Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022792.1

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Forward (+)

2959 .. 4131

Gene Structure 1173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022792.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

atggctgtcgactggtctacggatattcctcgagatcttgttctctgtttcgccaatcggttgatggtttcattggaggattttattgctttcggtgcagtttgcaaatcatggagttcagcggcgatggaggtaaaggaaaactaccttgctagtattagtactagtaccagtactagcactggattgagattattagcatatcaagttcctctcctaatgctaccggtaagacttacccttccacggggtgttgcaggcggtgacgtgacggttgaattttacagtctgactgcaaaagatgaacgaactagttcgctacaatatccccttgaagatataggcaagtttgtcttatcgtcgagtccttcttggacatcggattacgtagtcatgtttcatacttctactactttggcatactgcagaccaggactaggtgaaaattggacggagctatcattccaaacggacaatattaatattatcagtgatctgacttactatcggggacaattttatgtggtggactgttgtggccgtgttttagtcgtttgtgatattgacgaccctaatcgagcaaaactgaagagctctattgcttgttttttgtctcttctccctaagtatgaatccactaccgcctgtagggttttcgaggtccaatttaataacgacaattcatggaacgactctgaggtcaaggatttggggaatagagcaatcttcttgagtcaaagtagttcttccttctgtattgaagtcattgattattccggatgtaaagccaattgcatatacttcatgaacaatatgttagtctcttcagtgctaaacattgatatgggtatttataatatgagcaactcgtcaatcgaccgagaatttggcaaatccttcaattatgattttaaagataagagtggatcgcatttatggattcaaccgagttttgaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

319

Amino Acids

35.77

Weight (kDa)

4.73

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	855
AasI	GACNNNNNNGTC	1 cut(s)	698
AccI	GTMKAC	2 cut(s)	9, 17
AccIII	TCCGGA	1 cut(s)	776
AciI	CCGC	3 cut(s)	122, 261, 642
AclWI	GGATC	1 cut(s)	934
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	2 cut(s)	278, 884
AcuI	CTGAAG	2 cut(s)	608, 810
AdeI	CACNNNGTG	1 cut(s)	251
AfaI	GTAC	3 cut(s)	163, 169, 175
AfiI	CCNNNNNNNGG	4 cut(s)	246, 247, 437, 648
AgeI	ACCGGT	1 cut(s)	226
AgsI	TTSAA	6 cut(s)	278, 335, 761, 901, 944, 956
AhlI	ACTAGT	2 cut(s)	164, 311
AjiI	CACGTC	1 cut(s)	268
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	457, 594
AluI	AGCT	2 cut(s)	457, 594
Alw21I	GWGCWC	1 cut(s)	596
Alw26I	GTCTC	2 cut(s)	618, 826
AlwI	GGATC	1 cut(s)	934
Ama87I	CYCGRG	1 cut(s)	30
Aor13HI	TCCGGA	1 cut(s)	776
AoxI	GGCC	1 cut(s)	538
ApoI	RAATTY	2 cut(s)	278, 884
ArsI	GACNNNNNNTTYG	2 cut(s)	869, 901
AseI	ATTAAT	1 cut(s)	480
AsiGI	ACCGGT	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	661
AsuHPI	GGTGA	2 cut(s)	275, 452
AvaI	CYCGRG	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	661
BanII	GRGCYC	1 cut(s)	596
Bbv12I	GWGCWC	1 cut(s)	596
BccI	CCATC	2 cut(s)	58, 121
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	618, 826
BcuI	ACTAGT	2 cut(s)	164, 311
BfaI	CTAG	5 cut(s)	153, 165, 177, 312, 437
BfmI	CTRYAG	2 cut(s)	424, 646
BglII	AGATCT	1 cut(s)	34
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmcAI	AGTACT	2 cut(s)	163, 175
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	661
BmeT110I	CYCGRG	1 cut(s)	30
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	1 cut(s)	661
BmrFI	CCNGG	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	751
BsaAI	YACGTR	1 cut(s)	388
BsaJI	CCNNGG	1 cut(s)	245
BsaWI	WCCGGW	2 cut(s)	226, 776
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 247, 437, 648
Bse118I	RCCGGY	1 cut(s)	226
Bse1I	ACTGG	3 cut(s)	17, 171, 187
BseAI	TCCGGA	1 cut(s)	776
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	1 cut(s)	245
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	4 cut(s)	246, 247, 437, 648
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	3 cut(s)	17, 171, 187
BsgI	GTGCAG	1 cut(s)	117
Bsh1285I	CGRYCG	1 cut(s)	880
BshFI	GGCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	880
BsiHKAI	GWGCWC	1 cut(s)	596
BsiHKCI	CYCGRG	1 cut(s)	30
BsiSI	CCGG	2 cut(s)	227, 777
BslFI	GGGAC	1 cut(s)	525
BslI	CCNNNNNNNGG	4 cut(s)	246, 247, 437, 648
BsmAI	GTCTC	2 cut(s)	618, 826
BsmFI	GGGAC	1 cut(s)	525
BsnI	GGCC	1 cut(s)	540
BsoBI	CYCGRG	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	596
Bsp13I	TCCGGA	1 cut(s)	776
Bsp143I	GATC	3 cut(s)	34, 493, 926
BspACI	CCGC	3 cut(s)	122, 261, 642
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	1 cut(s)	688
BspEI	TCCGGA	1 cut(s)	776
BspHI	TCATGA	1 cut(s)	804
BspMAI	CTGCAG	1 cut(s)	428
BspPI	GGATC	1 cut(s)	934
BspQI	GCTCTTC	1 cut(s)	584
BsrFI	RCCGGY	1 cut(s)	226
BsrI	ACTGG	3 cut(s)	17, 171, 187
BssAI	RCCGGY	1 cut(s)	226
BssECI	CCNNGG	1 cut(s)	245
BssMI	GATC	3 cut(s)	34, 493, 926
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	3 cut(s)	274, 287, 533
Bst6I	CTCTTC	3 cut(s)	584, 621, 829
BstBAI	YACGTR	1 cut(s)	388
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	2 cut(s)	624, 696
BstDSI	CCRYGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	785
BstKTI	GATC	3 cut(s)	37, 496, 929
BstMAI	GTCTC	2 cut(s)	618, 826
BstMBI	GATC	3 cut(s)	34, 493, 926
BstMCI	CGRYCG	1 cut(s)	880
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	424, 646
BstSNI	TACGTA	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	34
BstYI	RGATCY	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	245
BtgZI	GCGATG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	180, 496, 834
Cac8I	GCNNGC	1 cut(s)	259
CciI	TCATGA	1 cut(s)	804
Cfr10I	RCCGGY	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	661
Csp6I	GTAC	3 cut(s)	162, 168, 174
CspAI	ACCGGT	1 cut(s)	226
CviAII	CATG	4 cut(s)	111, 394, 684, 805
CviJI	RGCY	5 cut(s)	5, 457, 540, 594, 788
CviKI_1	RGCY	5 cut(s)	5, 457, 540, 594, 788
CviQI	GTAC	3 cut(s)	162, 168, 174
DdeI	CTNAG	2 cut(s)	624, 696
DpnI	GATC	3 cut(s)	36, 495, 928
DpnII	GATC	3 cut(s)	34, 493, 926
DraI	TTTAAA	1 cut(s)	913
DraIII	CACNNNGTG	1 cut(s)	251
DrdI	GACNNNNNNGTC	1 cut(s)	698
DseDI	GACNNNNNNGTC	1 cut(s)	698
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	584, 621, 829
EarI	CTCTTC	3 cut(s)	584, 621, 829
Ecl136II	GAGCTC	1 cut(s)	594
Eco105I	TACGTA	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	596
Eco47I	GGWCC	1 cut(s)	661
Eco53kI	GAGCTC	1 cut(s)	594
Eco57I	CTGAAG	2 cut(s)	608, 810
Eco88I	CYCGRG	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	594
EcoRII	CCWGG	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	596
FaeI	CATG	4 cut(s)	114, 397, 687, 808
FalI	AAGNNNNNCTT	4 cut(s)	338, 370, 730, 762
FaqI	GGGAC	1 cut(s)	525
FatI	CATG	4 cut(s)	110, 393, 683, 804
FblI	GTMKAC	2 cut(s)	9, 17
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	792
FriOI	GRGCYC	1 cut(s)	596
Fsp4HI	GCNGC	1 cut(s)	123
FspBI	CTAG	5 cut(s)	153, 165, 177, 312, 437
GluI	GCNGC	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	2 cut(s)	227, 777
Hin1II	CATG	4 cut(s)	114, 397, 687, 808
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HinfI	GANTC	5 cut(s)	364, 632, 692, 733, 940
HpaII	CCGG	2 cut(s)	227, 777
HphI	GGTGA	2 cut(s)	275, 452
Hpy166II	GTNNAC	3 cut(s)	10, 18, 529
Hpy188I	TCNGA	4 cut(s)	291, 382, 498, 697
Hpy188III	TCNNGA	4 cut(s)	32, 730, 777, 805
Hpy8I	GTNNAC	3 cut(s)	10, 18, 529
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	4 cut(s)	251, 378, 760, 907
HpyCH4III	ACNGT	3 cut(s)	274, 287, 533
HpyCH4IV	ACGT	2 cut(s)	267, 387
HpyCH4V	TGCA	6 cut(s)	98, 105, 257, 296, 426, 795
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	2 cut(s)	624, 696
HpySE526I	ACGT	2 cut(s)	267, 387
Hsp92II	CATG	4 cut(s)	114, 397, 687, 808
Kpn2I	TCCGGA	1 cut(s)	776
Kzo9I	GATC	3 cut(s)	34, 493, 926
LguI	GCTCTTC	1 cut(s)	584
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	8 cut(s)	168, 184, 240, 243, 417, 444, 658, 790
MaeI	CTAG	5 cut(s)	153, 165, 177, 312, 437
MaeII	ACGT	2 cut(s)	267, 387
MaeIII	GTNAC	2 cut(s)	263, 268
MalI	GATC	3 cut(s)	36, 495, 928
MboI	GATC	3 cut(s)	34, 493, 926
MboII	GAAGA	6 cut(s)	347, 601, 608, 718, 738, 816
MfeI	CAATTG	1 cut(s)	790
MflI	RGATCY	1 cut(s)	34
MhlI	GDGCHC	1 cut(s)	596
MluCI	AATT	8 cut(s)	278, 445, 515, 665, 679, 790, 884, 901
MlyI	GAGTC	3 cut(s)	373, 686, 742
MnlI	CCTC	6 cut(s)	39, 70, 124, 222, 652, 691
MroI	TCCGGA	1 cut(s)	776
MroXI	GAANNNNTTC	1 cut(s)	313
MseI	TTAA	3 cut(s)	480, 669, 912
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	2 cut(s)	227, 777
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	790
MvaI	CCWGG	1 cut(s)	432
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	3 cut(s)	34, 493, 926
NlaIII	CATG	4 cut(s)	114, 397, 687, 808
NmuCI	GTSAC	2 cut(s)	263, 268
PaeR7I	CTCGAG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	804
PciSI	GCTCTTC	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	632, 940
PinAI	ACCGGT	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	124
PleI	GAGTC	3 cut(s)	372, 686, 741
PpsI	GAGTC	3 cut(s)	372, 686, 741
Ppu21I	YACGTR	1 cut(s)	388
PshBI	ATTAAT	1 cut(s)	480
PsiI	TTATAA	1 cut(s)	855
Psp124BI	GAGCTC	1 cut(s)	596
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	661
PstI	CTGCAG	1 cut(s)	428
PsuI	RGATCY	1 cut(s)	34
RsaI	GTAC	3 cut(s)	163, 169, 175
RsaNI	GTAC	3 cut(s)	162, 168, 174
RseI	CAYNNNNRTG	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	596
SalI	GTCGAC	1 cut(s)	8
SapI	GCTCTTC	1 cut(s)	584
SaqAI	TTAA	3 cut(s)	480, 669, 912
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	3 cut(s)	34, 493, 926
Sau96I	GGNCC	1 cut(s)	661
ScaI	AGTACT	2 cut(s)	163, 175
SchI	GAGTC	3 cut(s)	373, 686, 742
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	596
SetI	ASST	9 cut(s)	135, 150, 270, 390, 442, 459, 596, 663, 702
SfcI	CTRYAG	2 cut(s)	424, 646
Sfr274I	CTCGAG	1 cut(s)	30
SinI	GGWCC	1 cut(s)	661
SlaI	CTCGAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	2 cut(s)	30, 730
SmoI	CTYRAG	2 cut(s)	30, 730
SnaBI	TACGTA	1 cut(s)	388
SpeI	ACTAGT	2 cut(s)	164, 311
Sse9I	AATT	8 cut(s)	278, 445, 515, 665, 679, 790, 884, 901
SsiI	CCGC	3 cut(s)	122, 261, 642
SspI	AATATT	2 cut(s)	478, 484
SspMI	CTAG	5 cut(s)	153, 165, 177, 312, 437
SstI	GAGCTC	1 cut(s)	596
StyD4I	CCNGG	1 cut(s)	430
TaaI	ACNGT	3 cut(s)	274, 287, 533
TaiI	ACGT	2 cut(s)	270, 390
TaqI	TCGA	6 cut(s)	9, 31, 362, 577, 657, 876
TaqII	GACCGA	1 cut(s)	894
TasI	AATT	8 cut(s)	278, 445, 515, 665, 679, 790, 884, 901
TatI	WGTACW	2 cut(s)	161, 173
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	632, 940
Tru1I	TTAA	3 cut(s)	480, 669, 912
Tru9I	TTAA	3 cut(s)	480, 669, 912
TscAI	CASTG	3 cut(s)	187, 496, 834
TseFI	GTSAC	2 cut(s)	263, 268
Tsp45I	GTSAC	2 cut(s)	263, 268
TspDTI	ATGAA	7 cut(s)	60, 318, 389, 645, 672, 793, 821
TspGWI	ACGGA	3 cut(s)	35, 467, 485
TspRI	CASTG	3 cut(s)	187, 496, 834
VpaK11BI	GGWCC	1 cut(s)	661
VspI	ATTAAT	1 cut(s)	480
XapI	RAATTY	2 cut(s)	278, 884
XcmI	CCANNNNNNNNNTGG	1 cut(s)	61
XhoI	CTCGAG	1 cut(s)	30
XmiI	GTMKAC	2 cut(s)	9, 17
XmnI	GAANNNNTTC	1 cut(s)	313
XspI	CTAG	5 cut(s)	153, 165, 177, 312, 437
ZrmI	AGTACT	2 cut(s)	163, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.