Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000399

Physical Location & Seq

Genomic Coordinates Reverse (-)

30906447 .. 30906855

Gene Structure 409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCGATTTCAGAGATTTCTTGCACTTACGCCGCTTTGATCCTCCACGACGATGCCATTCCCATCACTGCTGAGAAGATTGCCACTTTGGTCAAAGCTGCCAATGTTTCTGTGGAGTCATACTGGCCTGGTTTGTTTGCCAAGCTTGCCGAGAAGAGAGACATCGGTGACCTCATCTTGAATGTTGGTGCTGGAGGCGGTGGCGGTGCTGTTGTCGTTGCCGTTACTGCCCCAGGTGCAGGCGCCGCCGCCCCTGCTGCAGCTACTCCTCTAGTGGAAGAGAAGGAGGAGCCAAAGGAAGAGAGTGATGATGATATGGGATTCAGCTTGTTCGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006109 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010565 GO:0019222 GO:0030656 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0043255 GO:0045912 GO:0046137 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051193 GO:0051195 GO:0051196 GO:0051198 GO:0062012 GO:0062014 GO:0065007 GO:0080090 GO:2000082 GO:2000083

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF295 F-box

Protein Analysis

112

Amino Acids

11.4

Weight (kDa)

4.24

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	22 - 111	6.1e-26	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000399)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g21230 FvH4_2g22763 FvH4_2g23250 FvH4_3g19214 FvH4_5g01761 FvH4_5g02180 FvH4_5g23981 FvH4_7g21350 FvH4_7g21590
malus_domestica	MD00G1040400.v1.1 MD00G1057500.v1.1 MD05G1079000.v1.1 MD05G1357500.v1.1 MD05G1357800.v1.1
prunus_persica	Prupe.4G213300_v2.0.a1 Prupe.8G190800_v2.0.a1 Prupe.8G190900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0372911 RchiOBHm_Chr5g0006331 RchiOBHm_Chr5g0032291 RchiOBHm_Chr6g0287741 RchiOBHm_Chr6g0287791 RchiOBHm_Chr6g0289281 RchiOBHm_Chr6g0290581 RchiOBHm_Chr6g0290601 RchiOBHm_Chr7g0210061
rosa_laevigata	RLG00000003898 RLG00000004101 RLG00000012190 RLG00000012194 RLG00000012196 RLG00000012198 RLG00000012199 RLG00000012200 RLG00000012278 RLG00000012316 RLG00000012346 RLG00000012468 RLG00000027389 RLG00000033378
rosa_multiflora	Rmu_sc0000366.1_g000019 Rmu_sc0001082.1_g000011 Rmu_sc0001105.1_g000009 Rmu_sc0002290.1_g000001 Rmu_sc0003335.1_g000005 Rmu_sc0003335.1_g000007 Rmu_sc0003877.1_g000009 Rmu_sc0003877.1_g000011 Rmu_sc0004311.1_g000002 Rmu_sc0006266.1_g000019 Rmu_sc0006802.1_g000001 Rmu_sc0008789.1_g000004 Rmu_sc0010418.1_g000008 Rmu_sc0016104.1_g000004 Rmu_sc0022792.1_g000002 Rmu_sc0030012.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248640 Rroxscaffold_3G00258060 Rroxscaffold_4G00284630 Rroxscaffold_4G00291560 Rroxscaffold_7G00172250 Rroxscaffold_7G00176870 Rroxscaffold_7G00176900 Rroxscaffold_7G00176910 Rroxscaffold_7G00179370 Rroxscaffold_7G00181120 Rroxscaffold_7G00181140 Rroxscaffold_7G00181220
rosa_rugosa	Rorug01G0324600 Rorug01G0324900 Rorug05G0130400 Rorug06G0191400 Rorug06G0191700 Rorug06G0192000 Rorug06G0192100 Rorug06G0199500 Rorug06G0199600 Rorug06G0210400 Rorug06G0213400 Rorug07G0044900
rosa_samantha	Rh1BG289300 Rh5CG250500 Rh6DG111000 Rh6DG299100 Rh6DG299400 Rh6DG299700 Rh6DG300000 Rh6DG324600 Rh7BG171300
rosa_wichuraiana	Rw0G015350 Rw1G029080 Rw1G029600 Rw5G020460 Rw6G026040 Rw6G028110 Rw6G028120 Rw6G028150 Rw6G031990 Rw7G014690 Rw7G014700 Rw7G015310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AciI	CCGC	5 cut(s)	33, 198, 204, 246, 249
AclWI	GGATC	1 cut(s)	34
AcyI	GRCGYC	1 cut(s)	243
AfiI	CCNNNNNNNGG	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	2 cut(s)	127, 232
AluBI	AGCT	4 cut(s)	98, 145, 263, 327
AluI	AGCT	4 cut(s)	98, 145, 263, 327
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	1 cut(s)	34
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	98, 257, 260
AspLEI	GCGC	1 cut(s)	245
AsuHPI	GGTGA	1 cut(s)	179
BanI	GGYRCC	1 cut(s)	242
BbvI	GCAGC	3 cut(s)	85, 244, 272
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	129, 234
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	2 cut(s)	272, 337
BfmI	CTRYAG	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	6 cut(s)	33, 99, 246, 249, 258, 261
BlsI	GCNGC	6 cut(s)	34, 100, 247, 250, 259, 262
Bme1390I	CCNGG	2 cut(s)	129, 234
BmiI	GGNNCC	2 cut(s)	244, 291
BmrFI	CCNGG	2 cut(s)	129, 234
BmsI	GCATC	1 cut(s)	43
BpmI	CTGGAG	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	239
Bse1I	ACTGG	1 cut(s)	128
BseBI	CCWGG	2 cut(s)	129, 234
BseDI	CCNNGG	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	239
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	128
BseRI	GAGGAG	2 cut(s)	258, 302
BseXI	GCAGC	3 cut(s)	85, 244, 272
BsgI	GTGCAG	1 cut(s)	258
BshFI	GGCC	1 cut(s)	127
BshNI	GGYRCC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	239
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	39
BspACI	CCGC	5 cut(s)	33, 198, 204, 246, 249
BspANI	GGCC	1 cut(s)	127
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	244, 291
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	34
BspT107I	GGYRCC	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	39
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	2 cut(s)	129, 234
Bst6I	CTCTTC	3 cut(s)	149, 273, 294
BstACI	GRCGYC	1 cut(s)	243
BstC8I	GCNNGC	2 cut(s)	147, 241
BstDEI	CTNAG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	167
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	42
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	39
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 227, 236, 245, 254, 257
BstNI	CCWGG	2 cut(s)	129, 234
BstPI	GGTNACC	1 cut(s)	167
BstSCI	CCNGG	2 cut(s)	127, 232
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	3 cut(s)	85, 244, 272
BsuRI	GGCC	1 cut(s)	127
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	2 cut(s)	147, 241
CfoI	GCGC	1 cut(s)	245
CviJI	RGCY	6 cut(s)	98, 127, 145, 263, 292, 327
CviKI_1	RGCY	6 cut(s)	98, 127, 145, 263, 292, 327
DdeI	CTNAG	1 cut(s)	72
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	1 cut(s)	41
DpnII	GATC	1 cut(s)	39
Eam1104I	CTCTTC	3 cut(s)	149, 273, 294
EarI	CTCTTC	3 cut(s)	149, 273, 294
Eco91I	GGTNACC	1 cut(s)	167
EcoO65I	GGTNACC	1 cut(s)	167
EcoRII	CCWGG	2 cut(s)	127, 232
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaiI	YATR	2 cut(s)	121, 317
Fnu4HI	GCNGC	6 cut(s)	33, 99, 246, 249, 258, 261
Fsp4HI	GCNGC	6 cut(s)	33, 99, 246, 249, 258, 261
FspBI	CTAG	2 cut(s)	272, 337
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	6 cut(s)	33, 99, 246, 249, 258, 261
GsuI	CTGGAG	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	1 cut(s)	127
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	2 cut(s)	116, 321
HphI	GGTGA	1 cut(s)	179
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	277
HpyCH4V	TGCA	3 cut(s)	24, 239, 260
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 227, 236, 245, 254, 257
HpyF3I	CTNAG	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	243
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	289
LpnPI	CCDG	8 cut(s)	109, 114, 141, 177, 219, 225, 246, 267
Lsp1109I	GCAGC	3 cut(s)	85, 244, 272
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	2 cut(s)	272, 337
MaeIII	GTNAC	2 cut(s)	167, 223
MalI	GATC	1 cut(s)	41
MboI	GATC	1 cut(s)	39
MboII	GAAGA	4 cut(s)	88, 166, 290, 311
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	5 cut(s)	53, 182, 188, 279, 280
MslI	CAYNNNNRTG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	129, 234
MvaI	CCWGG	2 cut(s)	129, 234
MwoI	GCNNNNNNNGC	6 cut(s)	146, 227, 236, 245, 254, 257
NarI	GGCGCC	1 cut(s)	243
NdeII	GATC	1 cut(s)	39
NlaIV	GGNNCC	2 cut(s)	244, 291
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	34, 100, 247, 250, 259, 262
PleI	GAGTC	1 cut(s)	124
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	127, 232
PspEI	GGTNACC	1 cut(s)	167
PspGI	CCWGG	2 cut(s)	127, 232
PspN4I	GGNNCC	2 cut(s)	244, 291
PstI	CTGCAG	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	51
SatI	GCNGC	6 cut(s)	33, 99, 246, 249, 258, 261
Sau3AI	GATC	1 cut(s)	39
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	129, 234
SetI	ASST	6 cut(s)	100, 147, 174, 238, 265, 329
SfaNI	GCATC	1 cut(s)	43
SfcI	CTRYAG	1 cut(s)	258
SfoI	GGCGCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	1 cut(s)	51
SsiI	CCGC	5 cut(s)	33, 198, 204, 246, 249
SspDI	GGCGCC	1 cut(s)	242
SspMI	CTAG	2 cut(s)	272, 337
StyD4I	CCNGG	2 cut(s)	127, 232
TaqI	TCGA	2 cut(s)	5, 333
TauI	GCSGC	3 cut(s)	35, 248, 251
TfiI	GAWTC	1 cut(s)	321
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	1 cut(s)	167
TseI	GCWGC	3 cut(s)	98, 257, 260
Tsp45I	GTSAC	1 cut(s)	167
TspRI	CASTG	1 cut(s)	73
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	272, 337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.